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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 124 |
| AccII | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| AciI | CCGC | 4 cut(s) | 115, 139, 211, 289 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AfaI | GTAC | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 82, 124, 374, 375, 449, 450, 539 |
| AgeI | ACCGGT | 2 cut(s) | 75, 423 |
| AluBI | AGCT | 2 cut(s) | 295, 522 |
| AluI | AGCT | 2 cut(s) | 295, 522 |
| Alw21I | GWGCWC | 1 cut(s) | 524 |
| Alw26I | GTCTC | 2 cut(s) | 498, 506 |
| AoxI | GGCC | 3 cut(s) | 100, 112, 365 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 476, 508 |
| AsiGI | ACCGGT | 2 cut(s) | 75, 423 |
| AspLEI | GCGC | 4 cut(s) | 194, 196, 198, 360 |
| AspS9I | GGNCC | 3 cut(s) | 366, 378, 426 |
| AsuC2I | CCSGG | 2 cut(s) | 168, 355 |
| AvaII | GGWCC | 2 cut(s) | 378, 426 |
| BanII | GRGCYC | 1 cut(s) | 524 |
| Bbv12I | GWGCWC | 1 cut(s) | 524 |
| BccI | CCATC | 3 cut(s) | 380, 443, 541 |
| BceAI | ACGGC | 2 cut(s) | 115, 127 |
| BcnI | CCSGG | 2 cut(s) | 168, 355 |
| BcoDI | GTCTC | 2 cut(s) | 498, 506 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 297 |
| BisI | GCNGC | 2 cut(s) | 115, 211 |
| BlsI | GCNGC | 2 cut(s) | 116, 212 |
| Bme1390I | CCNGG | 2 cut(s) | 168, 355 |
| Bme18I | GGWCC | 2 cut(s) | 378, 426 |
| BmgT120I | GGNCC | 3 cut(s) | 366, 378, 426 |
| BmiI | GGNNCC | 2 cut(s) | 136, 379 |
| BmrFI | CCNGG | 2 cut(s) | 168, 355 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BpmI | CTGGAG | 1 cut(s) | 522 |
| BpuMI | CCSGG | 2 cut(s) | 168, 355 |
| Bsa29I | ATCGAT | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 2 cut(s) | 166, 459 |
| BsaWI | WCCGGW | 3 cut(s) | 7, 75, 423 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 269, 299 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 82, 124, 374, 375, 449, 450, 539 |
| Bse118I | RCCGGY | 2 cut(s) | 75, 423 |
| BseCI | ATCGAT | 1 cut(s) | 411 |
| BseDI | CCNNGG | 2 cut(s) | 166, 459 |
| BseGI | GGATG | 1 cut(s) | 350 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 82, 124, 374, 375, 449, 450, 539 |
| BsePI | GCGCGC | 2 cut(s) | 192, 194 |
| BseX3I | CGGCCG | 1 cut(s) | 112 |
| Bsh1236I | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| Bsh1285I | CGRYCG | 1 cut(s) | 115 |
| BshFI | GGCC | 3 cut(s) | 102, 114, 367 |
| BshTI | ACCGGT | 2 cut(s) | 75, 423 |
| BshVI | ATCGAT | 1 cut(s) | 411 |
| BsiEI | CGRYCG | 1 cut(s) | 115 |
| BsiHKAI | GWGCWC | 1 cut(s) | 524 |
| BsiSI | CCGG | 5 cut(s) | 8, 76, 168, 355, 424 |
| BslFI | GGGAC | 1 cut(s) | 391 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 82, 124, 374, 375, 449, 450, 539 |
| BsmAI | GTCTC | 2 cut(s) | 498, 506 |
| BsmBI | CGTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 1 cut(s) | 391 |
| BsnI | GGCC | 3 cut(s) | 102, 114, 367 |
| Bsp1286I | GDGCHC | 1 cut(s) | 524 |
| Bsp143I | GATC | 3 cut(s) | 187, 408, 412 |
| Bsp68I | TCGCGA | 1 cut(s) | 529 |
| BspACI | CCGC | 4 cut(s) | 115, 139, 211, 289 |
| BspANI | GGCC | 3 cut(s) | 102, 114, 367 |
| BspDI | ATCGAT | 1 cut(s) | 411 |
| BspFNI | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| BspLI | GGNNCC | 2 cut(s) | 136, 379 |
| BspQI | GCTCTTC | 1 cut(s) | 529 |
| BsrFI | RCCGGY | 2 cut(s) | 75, 423 |
| BssAI | RCCGGY | 2 cut(s) | 75, 423 |
| BssECI | CCNNGG | 2 cut(s) | 166, 459 |
| BssHII | GCGCGC | 2 cut(s) | 192, 194 |
| BssMI | GATC | 3 cut(s) | 187, 408, 412 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 7 cut(s) | 39, 194, 196, 293, 387, 398, 402 |
| BstDEI | CTNAG | 2 cut(s) | 92, 246 |
| BstF5I | GGATG | 1 cut(s) | 350 |
| BstFNI | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| BstHHI | GCGC | 4 cut(s) | 194, 196, 198, 360 |
| BstKTI | GATC | 3 cut(s) | 190, 411, 415 |
| BstMAI | GTCTC | 2 cut(s) | 498, 506 |
| BstMBI | GATC | 3 cut(s) | 187, 408, 412 |
| BstMCI | CGRYCG | 1 cut(s) | 115 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 120, 200, 297, 364 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstSCI | CCNGG | 2 cut(s) | 166, 353 |
| BstUI | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| BstZI | CGGCCG | 1 cut(s) | 112 |
| Bsu15I | ATCGAT | 1 cut(s) | 411 |
| BsuRI | GGCC | 3 cut(s) | 102, 114, 367 |
| BsuTUI | ATCGAT | 1 cut(s) | 411 |
| BtsCI | GGATG | 1 cut(s) | 350 |
| BtsI | GCAGTG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 1 cut(s) | 118 |
| BtuMI | TCGCGA | 1 cut(s) | 529 |
| Cac8I | GCNNGC | 7 cut(s) | 39, 194, 196, 293, 387, 398, 402 |
| CfoI | GCGC | 4 cut(s) | 194, 196, 198, 360 |
| Cfr10I | RCCGGY | 2 cut(s) | 75, 423 |
| Cfr13I | GGNCC | 3 cut(s) | 366, 378, 426 |
| ClaI | ATCGAT | 1 cut(s) | 411 |
| Csp6I | GTAC | 1 cut(s) | 314 |
| CspAI | ACCGGT | 2 cut(s) | 75, 423 |
| CviAII | CATG | 2 cut(s) | 222, 397 |
| CviQI | GTAC | 1 cut(s) | 314 |
| DdeI | CTNAG | 2 cut(s) | 92, 246 |
| DpnI | GATC | 3 cut(s) | 189, 410, 414 |
| DpnII | GATC | 3 cut(s) | 187, 408, 412 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| EagI | CGGCCG | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 522 |
| EclXI | CGGCCG | 1 cut(s) | 112 |
| Eco24I | GRGCYC | 1 cut(s) | 524 |
| Eco32I | GATATC | 1 cut(s) | 232 |
| Eco47I | GGWCC | 2 cut(s) | 378, 426 |
| Eco52I | CGGCCG | 1 cut(s) | 112 |
| Eco53kI | GAGCTC | 1 cut(s) | 522 |
| EcoICRI | GAGCTC | 1 cut(s) | 522 |
| EcoO109I | RGGNCCY | 1 cut(s) | 378 |
| EcoRV | GATATC | 1 cut(s) | 232 |
| EcoT38I | GRGCYC | 1 cut(s) | 524 |
| Esp3I | CGTCTC | 1 cut(s) | 506 |
| FaeI | CATG | 2 cut(s) | 225, 400 |
| FaiI | YATR | 4 cut(s) | 223, 330, 398, 468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 34, 66 |
| FaqI | GGGAC | 1 cut(s) | 391 |
| FatI | CATG | 2 cut(s) | 221, 396 |
| FauI | CCCGC | 2 cut(s) | 146, 296 |
| Fnu4HI | GCNGC | 2 cut(s) | 115, 211 |
| FokI | GGATG | 1 cut(s) | 337 |
| FriOI | GRGCYC | 1 cut(s) | 524 |
| Fsp4HI | GCNGC | 2 cut(s) | 115, 211 |
| GlaI | GCGC | 4 cut(s) | 193, 195, 197, 359 |
| GluI | GCNGC | 2 cut(s) | 115, 211 |
| GsuI | CTGGAG | 1 cut(s) | 522 |
| HaeIII | GGCC | 3 cut(s) | 102, 114, 367 |
| HapII | CCGG | 5 cut(s) | 8, 76, 168, 355, 424 |
| HhaI | GCGC | 4 cut(s) | 194, 196, 198, 360 |
| Hin1II | CATG | 2 cut(s) | 225, 400 |
| Hin6I | GCGC | 4 cut(s) | 192, 194, 196, 358 |
| HinP1I | GCGC | 4 cut(s) | 192, 194, 196, 358 |
| HinfI | GANTC | 1 cut(s) | 158 |
| HpaII | CCGG | 5 cut(s) | 8, 76, 168, 355, 424 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 229, 308 |
| Hpy188III | TCNNGA | 3 cut(s) | 376, 528, 541 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 2 cut(s) | 125, 172 |
| HpyCH4V | TGCA | 1 cut(s) | 56 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 120, 200, 297, 364 |
| HpyF3I | CTNAG | 2 cut(s) | 92, 246 |
| Hsp92II | CATG | 2 cut(s) | 225, 400 |
| HspAI | GCGC | 4 cut(s) | 192, 194, 196, 358 |
| Kzo9I | GATC | 3 cut(s) | 187, 408, 412 |
| LguI | GCTCTTC | 1 cut(s) | 529 |
| LpnPI | CCDG | 8 cut(s) | 21, 89, 181, 305, 368, 399, 437, 486 |
| LweI | GCATC | 1 cut(s) | 322 |
| MalI | GATC | 3 cut(s) | 189, 410, 414 |
| MauBI | CGCGCGCG | 1 cut(s) | 192 |
| MboI | GATC | 3 cut(s) | 187, 408, 412 |
| MboII | GAAGA | 3 cut(s) | 140, 407, 516 |
| MfeI | CAATTG | 1 cut(s) | 495 |
| MhlI | GDGCHC | 1 cut(s) | 524 |
| MluCI | AATT | 3 cut(s) | 14, 340, 495 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| MnlI | CCTC | 8 cut(s) | 4, 69, 113, 152, 186, 379, 391, 454 |
| MseI | TTAA | 1 cut(s) | 302 |
| MspI | CCGG | 5 cut(s) | 8, 76, 168, 355, 424 |
| MspR9I | CCNGG | 2 cut(s) | 168, 355 |
| MunI | CAATTG | 1 cut(s) | 495 |
| MvnI | CGCG | 6 cut(s) | 192, 194, 196, 360, 404, 529 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 120, 200, 297, 364 |
| NciI | CCSGG | 2 cut(s) | 168, 355 |
| NdeII | GATC | 3 cut(s) | 187, 408, 412 |
| NlaIII | CATG | 2 cut(s) | 225, 400 |
| NlaIV | GGNNCC | 2 cut(s) | 136, 379 |
| NruI | TCGCGA | 1 cut(s) | 529 |
| NspI | RCATGY | 1 cut(s) | 400 |
| PaeI | GCATGC | 1 cut(s) | 400 |
| PauI | GCGCGC | 2 cut(s) | 192, 194 |
| PciSI | GCTCTTC | 1 cut(s) | 529 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 408 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 124 |
| PinAI | ACCGGT | 2 cut(s) | 75, 423 |
| PkrI | GCNGC | 2 cut(s) | 116, 212 |
| PpuMI | RGGWCCY | 1 cut(s) | 378 |
| Psp124BI | GAGCTC | 1 cut(s) | 524 |
| Psp5II | RGGWCCY | 1 cut(s) | 378 |
| PspN4I | GGNNCC | 2 cut(s) | 136, 379 |
| PspPI | GGNCC | 3 cut(s) | 366, 378, 426 |
| PspPPI | RGGWCCY | 1 cut(s) | 378 |
| PteI | GCGCGC | 2 cut(s) | 192, 194 |
| RruI | TCGCGA | 1 cut(s) | 529 |
| RsaI | GTAC | 1 cut(s) | 315 |
| RsaNI | GTAC | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 524 |
| SapI | GCTCTTC | 1 cut(s) | 529 |
| SaqAI | TTAA | 1 cut(s) | 302 |
| SatI | GCNGC | 2 cut(s) | 115, 211 |
| Sau3AI | GATC | 3 cut(s) | 187, 408, 412 |
| Sau96I | GGNCC | 3 cut(s) | 366, 378, 426 |
| ScrFI | CCNGG | 2 cut(s) | 168, 355 |
| SduI | GDGCHC | 1 cut(s) | 524 |
| SetI | ASST | 5 cut(s) | 61, 136, 297, 383, 524 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SinI | GGWCC | 2 cut(s) | 378, 426 |
| SphI | GCATGC | 1 cut(s) | 400 |
| Sse9I | AATT | 3 cut(s) | 14, 340, 495 |
| SsiI | CCGC | 4 cut(s) | 115, 139, 211, 289 |
| SstI | GAGCTC | 1 cut(s) | 524 |
| StyD4I | CCNGG | 2 cut(s) | 166, 353 |
| TaqI | TCGA | 3 cut(s) | 149, 411, 482 |
| TasI | AATT | 3 cut(s) | 14, 340, 495 |
| TauI | GCSGC | 2 cut(s) | 117, 213 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| Tru1I | TTAA | 1 cut(s) | 302 |
| Tru9I | TTAA | 1 cut(s) | 302 |
| TscAI | CASTG | 1 cut(s) | 125 |
| TspDTI | ATGAA | 2 cut(s) | 36, 210 |
| TspRI | CASTG | 1 cut(s) | 125 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 2 cut(s) | 378, 426 |
| XceI | RCATGY | 1 cut(s) | 400 |