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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1320 |
| Acc36I | ACCTGC | 2 cut(s) | 577, 712 |
| AccB1I | GGYRCC | 1 cut(s) | 944 |
| AccBSI | CCGCTC | 1 cut(s) | 1307 |
| AccII | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| AccIII | TCCGGA | 1 cut(s) | 356 |
| AclWI | GGATC | 1 cut(s) | 1430 |
| AcoI | YGGCCR | 3 cut(s) | 349, 888, 1308 |
| AcsI | RAATTY | 2 cut(s) | 397, 542 |
| AcuI | CTGAAG | 4 cut(s) | 219, 276, 589, 954 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AfaI | GTAC | 4 cut(s) | 519, 939, 1101, 1208 |
| AgeI | ACCGGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 5 cut(s) | 154, 395, 1106, 1463, 1538 |
| AjiI | CACGTC | 2 cut(s) | 254, 697 |
| AjnI | CCWGG | 6 cut(s) | 261, 577, 1136, 1180, 1325, 1335 |
| AluBI | AGCT | 7 cut(s) | 738, 1031, 1055, 1094, 1199, 1559, 1565 |
| AluI | AGCT | 7 cut(s) | 738, 1031, 1055, 1094, 1199, 1559, 1565 |
| Alw21I | GWGCWC | 1 cut(s) | 1201 |
| Alw26I | GTCTC | 1 cut(s) | 712 |
| AlwI | GGATC | 1 cut(s) | 1430 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 929 |
| Aor13HI | TCCGGA | 1 cut(s) | 356 |
| ApeKI | GCWGC | 6 cut(s) | 167, 437, 929, 1040, 1043, 1046 |
| ApoI | RAATTY | 2 cut(s) | 397, 542 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| AseI | ATTAAT | 1 cut(s) | 1296 |
| AsiGI | ACCGGT | 1 cut(s) | 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1250 |
| AspLEI | GCGC | 6 cut(s) | 456, 649, 823, 1040, 1187, 1321 |
| AsuC2I | CCSGG | 4 cut(s) | 837, 993, 1119, 1489 |
| AsuHPI | GGTGA | 5 cut(s) | 385, 629, 851, 1246, 1492 |
| AsuNHI | GCTAGC | 1 cut(s) | 1090 |
| AvaII | GGWCC | 4 cut(s) | 466, 600, 905, 1443 |
| AxyI | CCTNAGG | 1 cut(s) | 783 |
| BalI | TGGCCA | 1 cut(s) | 351 |
| BanI | GGYRCC | 1 cut(s) | 944 |
| BanII | GRGCYC | 4 cut(s) | 250, 288, 387, 1201 |
| BauI | CACGAG | 2 cut(s) | 688, 878 |
| BbsI | GAAGAC | 3 cut(s) | 374, 431, 1274 |
| Bbv12I | GWGCWC | 1 cut(s) | 1201 |
| BbvI | GCAGC | 6 cut(s) | 154, 424, 916, 1027, 1030, 1033 |
| BccI | CCATC | 1 cut(s) | 1244 |
| BceAI | ACGGC | 3 cut(s) | 32, 1051, 1500 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 113, 147, 575, 609, 679, 713 |
| BciT130I | CCWGG | 6 cut(s) | 263, 579, 1138, 1182, 1327, 1337 |
| BciVI | GTATCC | 2 cut(s) | 62, 1363 |
| BcnI | CCSGG | 4 cut(s) | 837, 993, 1119, 1489 |
| BcoDI | GTCTC | 1 cut(s) | 712 |
| BfaI | CTAG | 7 cut(s) | 341, 809, 1091, 1202, 1514, 1526, 1556 |
| BfmI | CTRYAG | 1 cut(s) | 1274 |
| BfoI | RGCGCY | 3 cut(s) | 650, 824, 1041 |
| BfuAI | ACCTGC | 2 cut(s) | 577, 712 |
| BfuI | GTATCC | 2 cut(s) | 62, 1363 |
| BmcAI | AGTACT | 2 cut(s) | 939, 1208 |
| Bme18I | GGWCC | 4 cut(s) | 466, 600, 905, 1443 |
| BmgBI | CACGTC | 2 cut(s) | 254, 697 |
| BmrI | ACTGGG | 1 cut(s) | 710 |
| BmsI | GCATC | 4 cut(s) | 693, 763, 869, 1196 |
| BmtI | GCTAGC | 1 cut(s) | 1094 |
| BmuI | ACTGGG | 1 cut(s) | 710 |
| BpiI | GAAGAC | 3 cut(s) | 374, 431, 1274 |
| Bpu10I | CCTNAGC | 2 cut(s) | 33, 1065 |
| BpuEI | CTTGAG | 4 cut(s) | 834, 1231, 1514, 1545 |
| BpuMI | CCSGG | 4 cut(s) | 837, 993, 1119, 1489 |
| Bsa29I | ATCGAT | 1 cut(s) | 863 |
| BsaBI | GATNNNNATC | 2 cut(s) | 417, 869 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaI | GGTCTC | 1 cut(s) | 712 |
| BsaJI | CCNNGG | 9 cut(s) | 48, 261, 441, 482, 651, 966, 992, 1137, 1335 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 356 |
| Bse118I | RCCGGY | 2 cut(s) | 238, 597 |
| Bse1I | ACTGG | 7 cut(s) | 352, 352, 519, 530, 619, 716, 1086 |
| Bse21I | CCTNAGG | 1 cut(s) | 783 |
| Bse8I | GATNNNNATC | 2 cut(s) | 417, 869 |
| BseAI | TCCGGA | 1 cut(s) | 356 |
| BseBI | CCWGG | 6 cut(s) | 263, 579, 1138, 1182, 1327, 1337 |
| BseCI | ATCGAT | 1 cut(s) | 863 |
| BseDI | CCNNGG | 9 cut(s) | 48, 261, 441, 482, 651, 966, 992, 1137, 1335 |
| BseGI | GGATG | 6 cut(s) | 124, 778, 802, 984, 1170, 1187 |
| BseJI | GATNNNNATC | 2 cut(s) | 417, 869 |
| BseMII | CTCAG | 4 cut(s) | 51, 774, 1056, 1233 |
| BseNI | ACTGG | 7 cut(s) | 352, 352, 519, 530, 619, 716, 1086 |
| BseX3I | CGGCCG | 2 cut(s) | 888, 1308 |
| BseXI | GCAGC | 6 cut(s) | 154, 424, 916, 1027, 1030, 1033 |
| BseYI | CCCAGC | 2 cut(s) | 961, 1051 |
| BsgI | GTGCAG | 2 cut(s) | 345, 740 |
| Bsh1236I | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| Bsh1285I | CGRYCG | 2 cut(s) | 891, 1311 |
| BshNI | GGYRCC | 1 cut(s) | 944 |
| BshTI | ACCGGT | 1 cut(s) | 238 |
| BshVI | ATCGAT | 1 cut(s) | 863 |
| BsiEI | CGRYCG | 2 cut(s) | 891, 1311 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1201 |
| BslFI | GGGAC | 3 cut(s) | 70, 1149, 1429 |
| BsmAI | GTCTC | 1 cut(s) | 712 |
| BsmFI | GGGAC | 3 cut(s) | 70, 1149, 1429 |
| BsmI | GAATGC | 1 cut(s) | 562 |
| Bso31I | GGTCTC | 1 cut(s) | 712 |
| Bsp1286I | GDGCHC | 4 cut(s) | 250, 288, 387, 1201 |
| Bsp13I | TCCGGA | 1 cut(s) | 356 |
| Bsp143I | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| Bsp19I | CCATGG | 2 cut(s) | 482, 651 |
| Bsp68I | TCGCGA | 3 cut(s) | 1227, 1380, 1569 |
| BspCNI | CTCAG | 4 cut(s) | 52, 775, 1057, 1234 |
| BspDI | ATCGAT | 1 cut(s) | 863 |
| BspEI | TCCGGA | 1 cut(s) | 356 |
| BspFNI | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| BspHI | TCATGA | 1 cut(s) | 1024 |
| BspMI | ACCTGC | 2 cut(s) | 577, 712 |
| BspOI | GCTAGC | 1 cut(s) | 1094 |
| BspPI | GGATC | 1 cut(s) | 1430 |
| BspT107I | GGYRCC | 1 cut(s) | 944 |
| BspTNI | GGTCTC | 1 cut(s) | 712 |
| BsrBI | CCGCTC | 1 cut(s) | 1307 |
| BsrFI | RCCGGY | 2 cut(s) | 238, 597 |
| BsrI | ACTGG | 7 cut(s) | 352, 352, 519, 530, 619, 716, 1086 |
| BssAI | RCCGGY | 2 cut(s) | 238, 597 |
| BssECI | CCNNGG | 9 cut(s) | 48, 261, 441, 482, 651, 966, 992, 1137, 1335 |
| BssMI | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| BssSI | CACGAG | 2 cut(s) | 688, 878 |
| BssT1I | CCWWGG | 3 cut(s) | 441, 482, 651 |
| Bst2BI | CACGAG | 2 cut(s) | 688, 878 |
| Bst2UI | CCWGG | 6 cut(s) | 263, 579, 1138, 1182, 1327, 1337 |
| Bst4CI | ACNGT | 2 cut(s) | 373, 430 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 332, 929 |
| BstDEI | CTNAG | 5 cut(s) | 33, 60, 783, 1065, 1242 |
| BstDSI | CCRYGG | 4 cut(s) | 48, 482, 651, 966 |
| BstF5I | GGATG | 6 cut(s) | 124, 778, 802, 984, 1170, 1187 |
| BstFNI | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| BstH2I | RGCGCY | 3 cut(s) | 650, 824, 1041 |
| BstHHI | GCGC | 6 cut(s) | 456, 649, 823, 1040, 1187, 1321 |
| BstKTI | GATC | 4 cut(s) | 215, 378, 511, 1425 |
| BstMAI | GTCTC | 1 cut(s) | 712 |
| BstMBI | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| BstMCI | CGRYCG | 2 cut(s) | 891, 1311 |
| BstNI | CCWGG | 6 cut(s) | 263, 579, 1138, 1182, 1327, 1337 |
| BstSFI | CTRYAG | 1 cut(s) | 1274 |
| BstUI | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| BstV1I | GCAGC | 6 cut(s) | 154, 424, 916, 1027, 1030, 1033 |
| BstV2I | GAAGAC | 3 cut(s) | 374, 431, 1274 |
| BstZI | CGGCCG | 2 cut(s) | 888, 1308 |
| Bsu15I | ATCGAT | 1 cut(s) | 863 |
| Bsu36I | CCTNAGG | 1 cut(s) | 783 |
| BsuI | GTATCC | 2 cut(s) | 62, 1363 |
| BsuTUI | ATCGAT | 1 cut(s) | 863 |
| BtgI | CCRYGG | 4 cut(s) | 48, 482, 651, 966 |
| BtrI | CACGTC | 2 cut(s) | 254, 697 |
| BtsCI | GGATG | 6 cut(s) | 124, 778, 802, 984, 1170, 1187 |
| BtsIMutI | CAGTG | 5 cut(s) | 337, 345, 474, 723, 1239 |
| BtuMI | TCGCGA | 3 cut(s) | 1227, 1380, 1569 |
| BveI | ACCTGC | 2 cut(s) | 577, 712 |
| CaiI | CAGNNNCTG | 1 cut(s) | 929 |
| CciI | TCATGA | 1 cut(s) | 1024 |
| CciNI | GCGGCCGC | 1 cut(s) | 1308 |
| CfoI | GCGC | 6 cut(s) | 456, 649, 823, 1040, 1187, 1321 |
| Cfr10I | RCCGGY | 2 cut(s) | 238, 597 |
| Cfr42I | CCGCGG | 1 cut(s) | 969 |
| ClaI | ATCGAT | 1 cut(s) | 863 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 4 cut(s) | 518, 938, 1100, 1207 |
| CspAI | ACCGGT | 1 cut(s) | 238 |
| CviAII | CATG | 5 cut(s) | 483, 559, 652, 1025, 1499 |
| CviQI | GTAC | 4 cut(s) | 518, 938, 1100, 1207 |
| DdeI | CTNAG | 5 cut(s) | 33, 60, 783, 1065, 1242 |
| DpnI | GATC | 4 cut(s) | 214, 377, 510, 1424 |
| DpnII | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| EaeI | YGGCCR | 3 cut(s) | 349, 888, 1308 |
| EagI | CGGCCG | 2 cut(s) | 888, 1308 |
| EciI | GGCGGA | 1 cut(s) | 1180 |
| Ecl136II | GAGCTC | 1 cut(s) | 1199 |
| EclXI | CGGCCG | 2 cut(s) | 888, 1308 |
| Eco130I | CCWWGG | 3 cut(s) | 441, 482, 651 |
| Eco24I | GRGCYC | 4 cut(s) | 250, 288, 387, 1201 |
| Eco31I | GGTCTC | 1 cut(s) | 712 |
| Eco47I | GGWCC | 4 cut(s) | 466, 600, 905, 1443 |
| Eco52I | CGGCCG | 2 cut(s) | 888, 1308 |
| Eco53kI | GAGCTC | 1 cut(s) | 1199 |
| Eco57I | CTGAAG | 4 cut(s) | 219, 276, 589, 954 |
| Eco81I | CCTNAGG | 1 cut(s) | 783 |
| EcoICRI | GAGCTC | 1 cut(s) | 1199 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1351 |
| EcoRII | CCWGG | 6 cut(s) | 261, 577, 1136, 1180, 1325, 1335 |
| EcoT14I | CCWWGG | 3 cut(s) | 441, 482, 651 |
| EcoT22I | ATGCAT | 1 cut(s) | 564 |
| EcoT38I | GRGCYC | 4 cut(s) | 250, 288, 387, 1201 |
| ErhI | CCWWGG | 3 cut(s) | 441, 482, 651 |
| FaeI | CATG | 5 cut(s) | 486, 562, 655, 1028, 1502 |
| FaiI | YATR | 9 cut(s) | 165, 484, 560, 653, 728, 1016, 1026, 1127, 1500 |
| FaqI | GGGAC | 3 cut(s) | 70, 1149, 1429 |
| FatI | CATG | 5 cut(s) | 482, 558, 651, 1024, 1498 |
| FauI | CCCGC | 4 cut(s) | 108, 197, 455, 961 |
| FokI | GGATG | 6 cut(s) | 131, 785, 789, 991, 1157, 1174 |
| FriOI | GRGCYC | 4 cut(s) | 250, 288, 387, 1201 |
| FspBI | CTAG | 7 cut(s) | 341, 809, 1091, 1202, 1514, 1526, 1556 |
| FspI | TGCGCA | 1 cut(s) | 1320 |
| GlaI | GCGC | 6 cut(s) | 455, 648, 822, 1039, 1186, 1320 |
| GsaI | CCCAGC | 2 cut(s) | 965, 1055 |
| HaeII | RGCGCY | 3 cut(s) | 650, 824, 1041 |
| HgaI | GACGC | 1 cut(s) | 53 |
| HhaI | GCGC | 6 cut(s) | 456, 649, 823, 1040, 1187, 1321 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| Hin1II | CATG | 5 cut(s) | 486, 562, 655, 1028, 1502 |
| Hin6I | GCGC | 6 cut(s) | 454, 647, 821, 1038, 1185, 1319 |
| HinP1I | GCGC | 6 cut(s) | 454, 647, 821, 1038, 1185, 1319 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 5 cut(s) | 109, 656, 898, 1162, 1279 |
| HphI | GGTGA | 5 cut(s) | 385, 629, 851, 1246, 1492 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 52, 1254 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 295, 409, 423, 466, 608, 661 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 52, 1254 |
| Hpy99I | CGWCG | 4 cut(s) | 413, 597, 698, 1227 |
| HpyAV | CCTTC | 9 cut(s) | 29, 59, 300, 321, 613, 614, 884, 968, 1083 |
| HpyCH4III | ACNGT | 2 cut(s) | 373, 430 |
| HpyCH4IV | ACGT | 3 cut(s) | 253, 696, 1153 |
| HpyCH4V | TGCA | 8 cut(s) | 326, 562, 586, 637, 700, 721, 776, 860 |
| HpyF3I | CTNAG | 5 cut(s) | 33, 60, 783, 1065, 1242 |
| HpySE526I | ACGT | 3 cut(s) | 253, 696, 1153 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| Hsp92II | CATG | 5 cut(s) | 486, 562, 655, 1028, 1502 |
| HspAI | GCGC | 6 cut(s) | 454, 647, 821, 1038, 1185, 1319 |
| Kpn2I | TCCGGA | 1 cut(s) | 356 |
| KspI | CCGCGG | 1 cut(s) | 969 |
| Kzo9I | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| LmnI | GCTCC | 3 cut(s) | 382, 1018, 1152 |
| Lsp1109I | GCAGC | 6 cut(s) | 154, 424, 916, 1027, 1030, 1033 |
| LweI | GCATC | 4 cut(s) | 693, 763, 869, 1196 |
| MaeI | CTAG | 7 cut(s) | 341, 809, 1091, 1202, 1514, 1526, 1556 |
| MaeII | ACGT | 3 cut(s) | 253, 696, 1153 |
| MaeIII | GTNAC | 1 cut(s) | 1480 |
| MalI | GATC | 4 cut(s) | 214, 377, 510, 1424 |
| MbiI | CCGCTC | 1 cut(s) | 1307 |
| MboI | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| MfeI | CAATTG | 3 cut(s) | 100, 701, 1469 |
| MhlI | GDGCHC | 4 cut(s) | 250, 288, 387, 1201 |
| MlsI | TGGCCA | 1 cut(s) | 351 |
| MluNI | TGGCCA | 1 cut(s) | 351 |
| MlyI | GAGTC | 2 cut(s) | 1171, 1288 |
| MmeI | TCCRAC | 2 cut(s) | 432, 1174 |
| Mox20I | TGGCCA | 1 cut(s) | 351 |
| Mph1103I | ATGCAT | 1 cut(s) | 564 |
| MroI | TCCGGA | 1 cut(s) | 356 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1250 |
| MscI | TGGCCA | 1 cut(s) | 351 |
| MseI | TTAA | 2 cut(s) | 570, 1296 |
| Msp20I | TGGCCA | 1 cut(s) | 351 |
| MspA1I | CMGCKG | 3 cut(s) | 115, 437, 968 |
| MunI | CAATTG | 3 cut(s) | 100, 701, 1469 |
| Mva1269I | GAATGC | 1 cut(s) | 562 |
| MvaI | CCWGG | 6 cut(s) | 263, 579, 1138, 1182, 1327, 1337 |
| MvnI | CGCG | 6 cut(s) | 380, 968, 1098, 1227, 1380, 1569 |
| NciI | CCSGG | 4 cut(s) | 837, 993, 1119, 1489 |
| NcoI | CCATGG | 2 cut(s) | 482, 651 |
| NdeII | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| NheI | GCTAGC | 1 cut(s) | 1090 |
| NlaIII | CATG | 5 cut(s) | 486, 562, 655, 1028, 1502 |
| NmuCI | GTSAC | 1 cut(s) | 1480 |
| NotI | GCGGCCGC | 1 cut(s) | 1308 |
| NruI | TCGCGA | 3 cut(s) | 1227, 1380, 1569 |
| NsbI | TGCGCA | 1 cut(s) | 1320 |
| NsiI | ATGCAT | 1 cut(s) | 564 |
| PagI | TCATGA | 1 cut(s) | 1024 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 384, 1228, 1254 |
| PctI | GAATGC | 1 cut(s) | 562 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1250 |
| PfeI | GAWTC | 3 cut(s) | 109, 656, 898 |
| PfoI | TCCNGGA | 1 cut(s) | 1117 |
| PinAI | ACCGGT | 1 cut(s) | 238 |
| PleI | GAGTC | 2 cut(s) | 1170, 1287 |
| PpsI | GAGTC | 2 cut(s) | 1170, 1287 |
| PshBI | ATTAAT | 1 cut(s) | 1296 |
| Psp124BI | GAGCTC | 1 cut(s) | 1201 |
| Psp6I | CCWGG | 6 cut(s) | 261, 577, 1136, 1180, 1325, 1335 |
| PspFI | CCCAGC | 2 cut(s) | 961, 1051 |
| PspGI | CCWGG | 6 cut(s) | 261, 577, 1136, 1180, 1325, 1335 |
| PstNI | CAGNNNCTG | 1 cut(s) | 929 |
| RruI | TCGCGA | 3 cut(s) | 1227, 1380, 1569 |
| RsaI | GTAC | 4 cut(s) | 519, 939, 1101, 1208 |
| RsaNI | GTAC | 4 cut(s) | 518, 938, 1100, 1207 |
| SacI | GAGCTC | 1 cut(s) | 1201 |
| SacII | CCGCGG | 1 cut(s) | 969 |
| SaqAI | TTAA | 2 cut(s) | 570, 1296 |
| Sau3AI | GATC | 4 cut(s) | 212, 375, 508, 1422 |
| ScaI | AGTACT | 2 cut(s) | 939, 1208 |
| SchI | GAGTC | 2 cut(s) | 1171, 1288 |
| SduI | GDGCHC | 4 cut(s) | 250, 288, 387, 1201 |
| SfaNI | GCATC | 4 cut(s) | 693, 763, 869, 1196 |
| SfcI | CTRYAG | 1 cut(s) | 1274 |
| Sfr303I | CCGCGG | 1 cut(s) | 969 |
| SgrBI | CCGCGG | 1 cut(s) | 969 |
| SinI | GGWCC | 4 cut(s) | 466, 600, 905, 1443 |
| SmlI | CTYRAG | 4 cut(s) | 849, 1210, 1493, 1560 |
| SmoI | CTYRAG | 4 cut(s) | 849, 1210, 1493, 1560 |
| SspMI | CTAG | 7 cut(s) | 341, 809, 1091, 1202, 1514, 1526, 1556 |
| SstI | GAGCTC | 1 cut(s) | 1201 |
| StyI | CCWWGG | 3 cut(s) | 441, 482, 651 |
| TaaI | ACNGT | 2 cut(s) | 373, 430 |
| TaiI | ACGT | 3 cut(s) | 256, 699, 1156 |
| TaqI | TCGA | 4 cut(s) | 177, 511, 863, 987 |
| TaqII | GACCGA | 1 cut(s) | 1431 |
| TatI | WGTACW | 2 cut(s) | 937, 1206 |
| TfiI | GAWTC | 3 cut(s) | 109, 656, 898 |
| Tru1I | TTAA | 2 cut(s) | 570, 1296 |
| Tru9I | TTAA | 2 cut(s) | 570, 1296 |
| TscAI | CASTG | 5 cut(s) | 337, 352, 481, 723, 1246 |
| TseFI | GTSAC | 1 cut(s) | 1480 |
| TseI | GCWGC | 6 cut(s) | 167, 437, 929, 1040, 1043, 1046 |
| Tsp45I | GTSAC | 1 cut(s) | 1480 |
| TspDTI | ATGAA | 6 cut(s) | 390, 510, 547, 995, 1041, 1314 |
| TspGWI | ACGGA | 2 cut(s) | 535, 1382 |
| TspRI | CASTG | 5 cut(s) | 337, 352, 481, 723, 1246 |
| VpaK11BI | GGWCC | 4 cut(s) | 466, 600, 905, 1443 |
| VspI | ATTAAT | 1 cut(s) | 1296 |
| XapI | RAATTY | 2 cut(s) | 397, 542 |
| XbaI | TCTAGA | 1 cut(s) | 1201 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1250 |
| XspI | CTAG | 7 cut(s) | 341, 809, 1091, 1202, 1514, 1526, 1556 |
| ZrmI | AGTACT | 2 cut(s) | 939, 1208 |
| Zsp2I | ATGCAT | 1 cut(s) | 564 |