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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 443 |
| Acc65I | GGTACC | 1 cut(s) | 408 |
| AccB1I | GGYRCC | 1 cut(s) | 408 |
| AccII | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| AciI | CCGC | 6 cut(s) | 282, 334, 370, 412, 495, 543 |
| AcoI | YGGCCR | 2 cut(s) | 258, 374 |
| AcsI | RAATTY | 1 cut(s) | 43 |
| AcyI | GRCGYC | 2 cut(s) | 91, 264 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 13, 179, 180, 292, 497 |
| AgsI | TTSAA | 1 cut(s) | 41 |
| AluBI | AGCT | 2 cut(s) | 169, 437 |
| AluI | AGCT | 2 cut(s) | 169, 437 |
| Alw26I | GTCTC | 2 cut(s) | 98, 214 |
| AoxI | GGCC | 5 cut(s) | 233, 258, 294, 374, 611 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| ApoI | RAATTY | 1 cut(s) | 43 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 551, 583 |
| Asp718I | GGTACC | 1 cut(s) | 408 |
| AspLEI | GCGC | 3 cut(s) | 199, 242, 421 |
| AspS9I | GGNCC | 2 cut(s) | 234, 295 |
| AsuC2I | CCSGG | 4 cut(s) | 7, 237, 257, 443 |
| AsuHPI | GGTGA | 3 cut(s) | 451, 501, 599 |
| AsuII | TTCGAA | 1 cut(s) | 69 |
| BaeGI | GKGCMC | 1 cut(s) | 347 |
| BalI | TGGCCA | 1 cut(s) | 376 |
| BanI | GGYRCC | 1 cut(s) | 408 |
| BbsI | GAAGAC | 1 cut(s) | 479 |
| BbvI | GCAGC | 1 cut(s) | 156 |
| BccI | CCATC | 4 cut(s) | 275, 360, 385, 612 |
| BcnI | CCSGG | 4 cut(s) | 7, 237, 257, 443 |
| BcoDI | GTCTC | 2 cut(s) | 98, 214 |
| BfaI | CTAG | 1 cut(s) | 434 |
| BfoI | RGCGCY | 1 cut(s) | 200 |
| BfuAI | ACCTGC | 1 cut(s) | 443 |
| BglII | AGATCT | 1 cut(s) | 430 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 237, 257, 443 |
| BmgT120I | GGNCC | 2 cut(s) | 234, 295 |
| BmiI | GGNNCC | 2 cut(s) | 121, 410 |
| BmrFI | CCNGG | 4 cut(s) | 7, 237, 257, 443 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BpiI | GAAGAC | 1 cut(s) | 479 |
| Bpu14I | TTCGAA | 1 cut(s) | 69 |
| BpuMI | CCSGG | 4 cut(s) | 7, 237, 257, 443 |
| Bsa29I | ATCGAT | 1 cut(s) | 141 |
| BsaHI | GRCGYC | 2 cut(s) | 91, 264 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 13, 179, 180, 292, 497 |
| Bse118I | RCCGGY | 1 cut(s) | 609 |
| BseCI | ATCGAT | 1 cut(s) | 141 |
| BseGI | GGATG | 2 cut(s) | 377, 451 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 13, 179, 180, 292, 497 |
| BseSI | GKGCMC | 1 cut(s) | 347 |
| BseX3I | CGGCCG | 1 cut(s) | 258 |
| BseXI | GCAGC | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| Bsh1285I | CGRYCG | 2 cut(s) | 261, 574 |
| BshFI | GGCC | 5 cut(s) | 235, 260, 296, 376, 613 |
| BshNI | GGYRCC | 1 cut(s) | 408 |
| BshVI | ATCGAT | 1 cut(s) | 141 |
| BsiEI | CGRYCG | 2 cut(s) | 261, 574 |
| BsiSI | CCGG | 6 cut(s) | 7, 226, 237, 257, 442, 610 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 13, 179, 180, 292, 497 |
| BsmAI | GTCTC | 2 cut(s) | 98, 214 |
| BsmBI | CGTCTC | 2 cut(s) | 98, 214 |
| BsmI | GAATGC | 1 cut(s) | 203 |
| BsnI | GGCC | 5 cut(s) | 235, 260, 296, 376, 613 |
| Bsp119I | TTCGAA | 1 cut(s) | 69 |
| Bsp1286I | GDGCHC | 1 cut(s) | 347 |
| Bsp143I | GATC | 3 cut(s) | 142, 430, 472 |
| BspACI | CCGC | 6 cut(s) | 282, 334, 370, 412, 495, 543 |
| BspANI | GGCC | 5 cut(s) | 235, 260, 296, 376, 613 |
| BspDI | ATCGAT | 1 cut(s) | 141 |
| BspFNI | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| BspLI | GGNNCC | 2 cut(s) | 121, 410 |
| BspMI | ACCTGC | 1 cut(s) | 443 |
| BspT104I | TTCGAA | 1 cut(s) | 69 |
| BspT107I | GGYRCC | 1 cut(s) | 408 |
| BsrFI | RCCGGY | 1 cut(s) | 609 |
| BssAI | RCCGGY | 1 cut(s) | 609 |
| BssMI | GATC | 3 cut(s) | 142, 430, 472 |
| BssNI | GRCGYC | 2 cut(s) | 91, 264 |
| Bst4CI | ACNGT | 2 cut(s) | 408, 513 |
| BstACI | GRCGYC | 2 cut(s) | 91, 264 |
| BstBI | TTCGAA | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 423, 439 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 2 cut(s) | 377, 451 |
| BstFNI | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| BstH2I | RGCGCY | 1 cut(s) | 200 |
| BstHHI | GCGC | 3 cut(s) | 199, 242, 421 |
| BstKTI | GATC | 3 cut(s) | 145, 433, 475 |
| BstMAI | GTCTC | 2 cut(s) | 98, 214 |
| BstMBI | GATC | 3 cut(s) | 142, 430, 472 |
| BstMCI | CGRYCG | 2 cut(s) | 261, 574 |
| BstSCI | CCNGG | 4 cut(s) | 5, 235, 255, 441 |
| BstSLI | GKGCMC | 1 cut(s) | 347 |
| BstUI | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| BstV1I | GCAGC | 1 cut(s) | 156 |
| BstV2I | GAAGAC | 1 cut(s) | 479 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BstZI | CGGCCG | 1 cut(s) | 258 |
| Bsu15I | ATCGAT | 1 cut(s) | 141 |
| BsuRI | GGCC | 5 cut(s) | 235, 260, 296, 376, 613 |
| BsuTUI | ATCGAT | 1 cut(s) | 141 |
| BtgZI | GCGATG | 1 cut(s) | 253 |
| BtsCI | GGATG | 2 cut(s) | 377, 451 |
| BveI | ACCTGC | 1 cut(s) | 443 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 423, 439 |
| CfoI | GCGC | 3 cut(s) | 199, 242, 421 |
| Cfr10I | RCCGGY | 1 cut(s) | 609 |
| Cfr13I | GGNCC | 2 cut(s) | 234, 295 |
| ClaI | ATCGAT | 1 cut(s) | 141 |
| CseI | GACGC | 2 cut(s) | 80, 272 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CviJI | RGCY | 8 cut(s) | 120, 169, 235, 260, 296, 376, 437, 613 |
| CviKI_1 | RGCY | 8 cut(s) | 120, 169, 235, 260, 296, 376, 437, 613 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 3 cut(s) | 144, 432, 474 |
| DpnII | GATC | 3 cut(s) | 142, 430, 472 |
| EaeI | YGGCCR | 2 cut(s) | 258, 374 |
| EagI | CGGCCG | 1 cut(s) | 258 |
| EclXI | CGGCCG | 1 cut(s) | 258 |
| Eco32I | GATATC | 1 cut(s) | 596 |
| Eco52I | CGGCCG | 1 cut(s) | 258 |
| EcoRV | GATATC | 1 cut(s) | 596 |
| Esp3I | CGTCTC | 2 cut(s) | 98, 214 |
| FaiI | YATR | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 2 cut(s) | 364, 458 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| FspBI | CTAG | 1 cut(s) | 434 |
| GlaI | GCGC | 3 cut(s) | 198, 241, 420 |
| GluI | GCNGC | 1 cut(s) | 170 |
| HaeII | RGCGCY | 1 cut(s) | 200 |
| HaeIII | GGCC | 5 cut(s) | 235, 260, 296, 376, 613 |
| HapII | CCGG | 6 cut(s) | 7, 226, 237, 257, 442, 610 |
| HgaI | GACGC | 2 cut(s) | 80, 272 |
| HhaI | GCGC | 3 cut(s) | 199, 242, 421 |
| Hin1I | GRCGYC | 2 cut(s) | 91, 264 |
| Hin6I | GCGC | 3 cut(s) | 197, 240, 419 |
| HinP1I | GCGC | 3 cut(s) | 197, 240, 419 |
| HinfI | GANTC | 3 cut(s) | 248, 317, 567 |
| HpaII | CCGG | 6 cut(s) | 7, 226, 237, 257, 442, 610 |
| HphI | GGTGA | 3 cut(s) | 451, 501, 599 |
| Hpy188I | TCNGA | 2 cut(s) | 312, 593 |
| Hpy188III | TCNNGA | 2 cut(s) | 111, 146 |
| Hpy99I | CGWCG | 2 cut(s) | 266, 295 |
| HpyAV | CCTTC | 2 cut(s) | 107, 307 |
| HpyCH4III | ACNGT | 2 cut(s) | 408, 513 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| Hsp92I | GRCGYC | 2 cut(s) | 91, 264 |
| HspAI | GCGC | 3 cut(s) | 197, 240, 419 |
| KpnI | GGTACC | 1 cut(s) | 412 |
| Kzo9I | GATC | 3 cut(s) | 142, 430, 472 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| LpnPI | CCDG | 7 cut(s) | 20, 124, 239, 250, 270, 438, 455 |
| Lsp1109I | GCAGC | 1 cut(s) | 156 |
| LweI | GCATC | 1 cut(s) | 145 |
| MaeI | CTAG | 1 cut(s) | 434 |
| MalI | GATC | 3 cut(s) | 144, 432, 474 |
| MboI | GATC | 3 cut(s) | 142, 430, 472 |
| MboII | GAAGA | 3 cut(s) | 139, 164, 479 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 1 cut(s) | 347 |
| MlsI | TGGCCA | 1 cut(s) | 376 |
| MluCI | AATT | 2 cut(s) | 43, 65 |
| MluNI | TGGCCA | 1 cut(s) | 376 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| MmeI | TCCRAC | 1 cut(s) | 318 |
| MnlI | CCTC | 4 cut(s) | 142, 318, 409, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 376 |
| MscI | TGGCCA | 1 cut(s) | 376 |
| MseI | TTAA | 1 cut(s) | 29 |
| Msp20I | TGGCCA | 1 cut(s) | 376 |
| MspA1I | CMGCKG | 1 cut(s) | 169 |
| MspI | CCGG | 6 cut(s) | 7, 226, 237, 257, 442, 610 |
| MspR9I | CCNGG | 4 cut(s) | 7, 237, 257, 443 |
| Mva1269I | GAATGC | 1 cut(s) | 203 |
| MvnI | CGCG | 4 cut(s) | 242, 414, 421, 495 |
| NciI | CCSGG | 4 cut(s) | 7, 237, 257, 443 |
| NdeII | GATC | 3 cut(s) | 142, 430, 472 |
| NlaIV | GGNNCC | 2 cut(s) | 121, 410 |
| NspV | TTCGAA | 1 cut(s) | 69 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 571 |
| PctI | GAATGC | 1 cut(s) | 203 |
| PfeI | GAWTC | 2 cut(s) | 248, 567 |
| PfoI | TCCNGGA | 1 cut(s) | 5 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| PleI | GAGTC | 1 cut(s) | 311 |
| PpsI | GAGTC | 1 cut(s) | 311 |
| PspN4I | GGNNCC | 2 cut(s) | 121, 410 |
| PspPI | GGNCC | 2 cut(s) | 234, 295 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| PvuII | CAGCTG | 1 cut(s) | 169 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| SaqAI | TTAA | 1 cut(s) | 29 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 3 cut(s) | 142, 430, 472 |
| Sau96I | GGNCC | 2 cut(s) | 234, 295 |
| SchI | GAGTC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 4 cut(s) | 7, 237, 257, 443 |
| SduI | GDGCHC | 1 cut(s) | 347 |
| SetI | ASST | 4 cut(s) | 18, 171, 439, 457 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SfuI | TTCGAA | 1 cut(s) | 69 |
| Sse9I | AATT | 2 cut(s) | 43, 65 |
| SsiI | CCGC | 6 cut(s) | 282, 334, 370, 412, 495, 543 |
| SspI | AATATT | 1 cut(s) | 192 |
| SspMI | CTAG | 1 cut(s) | 434 |
| StyD4I | CCNGG | 4 cut(s) | 5, 235, 255, 441 |
| TaaI | ACNGT | 2 cut(s) | 408, 513 |
| TaqI | TCGA | 4 cut(s) | 69, 141, 565, 570 |
| TaqII | GACCGA | 1 cut(s) | 588 |
| TasI | AATT | 2 cut(s) | 43, 65 |
| TfiI | GAWTC | 2 cut(s) | 248, 567 |
| Tru1I | TTAA | 1 cut(s) | 29 |
| Tru9I | TTAA | 1 cut(s) | 29 |
| TseI | GCWGC | 1 cut(s) | 169 |
| TspGWI | ACGGA | 1 cut(s) | 410 |
| XapI | RAATTY | 1 cut(s) | 43 |
| XspI | CTAG | 1 cut(s) | 434 |