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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1242 |
| AatII | GACGTC | 1 cut(s) | 942 |
| Acc16I | TGCGCA | 1 cut(s) | 1599 |
| Acc36I | ACCTGC | 3 cut(s) | 1018, 1236, 1402 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 895 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1657 |
| AccBSI | CCGCTC | 1 cut(s) | 349 |
| AclWI | GGATC | 5 cut(s) | 500, 818, 831, 1503, 1511 |
| AcoI | YGGCCR | 3 cut(s) | 302, 392, 1395 |
| AcsI | RAATTY | 1 cut(s) | 1331 |
| AcuI | CTGAAG | 2 cut(s) | 642, 1152 |
| AcyI | GRCGYC | 3 cut(s) | 189, 896, 939 |
| AfaI | GTAC | 5 cut(s) | 384, 425, 1053, 1299, 1315 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 294, 397, 515, 616, 949, 1031, 1091, 1534, 1657 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AjnI | CCWGG | 8 cut(s) | 65, 321, 509, 1017, 1198, 1239, 1406, 1656 |
| AluBI | AGCT | 7 cut(s) | 442, 662, 884, 1271, 1280, 1351, 1701 |
| AluI | AGCT | 7 cut(s) | 442, 662, 884, 1271, 1280, 1351, 1701 |
| Alw21I | GWGCWC | 4 cut(s) | 88, 1282, 1353, 1719 |
| Alw26I | GTCTC | 3 cut(s) | 95, 246, 913 |
| AlwI | GGATC | 5 cut(s) | 500, 818, 831, 1503, 1511 |
| ApaI | GGGCCC | 1 cut(s) | 923 |
| ApoI | RAATTY | 1 cut(s) | 1331 |
| AspLEI | GCGC | 9 cut(s) | 355, 694, 850, 898, 1268, 1372, 1600, 1636, 1685 |
| AsuC2I | CCSGG | 4 cut(s) | 151, 230, 249, 1263 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 134, 849 |
| AsuNHI | GCTAGC | 1 cut(s) | 1697 |
| AvaII | GGWCC | 4 cut(s) | 63, 232, 1524, 1537 |
| AxyI | CCTNAGG | 1 cut(s) | 873 |
| BaeGI | GKGCMC | 3 cut(s) | 74, 322, 923 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 823 |
| BanI | GGYRCC | 2 cut(s) | 71, 895 |
| BanII | GRGCYC | 4 cut(s) | 923, 981, 1282, 1353 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 4 cut(s) | 88, 1282, 1353, 1719 |
| BbvCI | CCTCAGC | 2 cut(s) | 443, 948 |
| BccI | CCATC | 7 cut(s) | 200, 233, 288, 313, 725, 1288, 1325 |
| BceAI | ACGGC | 4 cut(s) | 69, 236, 1602, 1647 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 1706, 1740 |
| BciT130I | CCWGG | 8 cut(s) | 67, 323, 511, 1019, 1200, 1241, 1408, 1658 |
| BcnI | CCSGG | 4 cut(s) | 151, 230, 249, 1263 |
| BcoDI | GTCTC | 3 cut(s) | 95, 246, 913 |
| BfaI | CTAG | 6 cut(s) | 98, 155, 362, 1469, 1637, 1698 |
| BfmI | CTRYAG | 3 cut(s) | 378, 437, 1229 |
| BfoI | RGCGCY | 4 cut(s) | 695, 851, 899, 1637 |
| BfuAI | ACCTGC | 3 cut(s) | 1018, 1236, 1402 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1403 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BlpI | GCTNAGC | 2 cut(s) | 739, 975 |
| BmcAI | AGTACT | 2 cut(s) | 384, 425 |
| Bme18I | GGWCC | 4 cut(s) | 63, 232, 1524, 1537 |
| BmrI | ACTGGG | 1 cut(s) | 416 |
| BmsI | GCATC | 1 cut(s) | 1105 |
| BmtI | GCTAGC | 1 cut(s) | 1701 |
| BmuI | ACTGGG | 1 cut(s) | 416 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BpmI | CTGGAG | 2 cut(s) | 654, 1182 |
| Bpu10I | CCTNAGC | 3 cut(s) | 443, 948, 1146 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 739, 975 |
| BpuEI | CTTGAG | 4 cut(s) | 870, 1071, 1266, 1647 |
| BpuMI | CCSGG | 4 cut(s) | 151, 230, 249, 1263 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaAI | YACGTR | 1 cut(s) | 639 |
| BsaHI | GRCGYC | 3 cut(s) | 189, 896, 939 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 8 cut(s) | 66, 321, 509, 510, 1017, 1199, 1240, 1392 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 548, 578 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 294, 397, 515, 616, 949, 1031, 1091, 1534, 1657 |
| Bse118I | RCCGGY | 4 cut(s) | 390, 537, 844, 892 |
| Bse1I | ACTGG | 2 cut(s) | 75, 411 |
| Bse21I | CCTNAGG | 1 cut(s) | 873 |
| BseBI | CCWGG | 8 cut(s) | 67, 323, 511, 1019, 1200, 1241, 1408, 1658 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 8 cut(s) | 66, 321, 509, 510, 1017, 1199, 1240, 1392 |
| BseGI | GGATG | 4 cut(s) | 225, 305, 1122, 1333 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 294, 397, 515, 616, 949, 1031, 1091, 1534, 1657 |
| BseNI | ACTGG | 2 cut(s) | 75, 411 |
| BseRI | GAGGAG | 6 cut(s) | 359, 890, 965, 1131, 1185, 1619 |
| BseSI | GKGCMC | 3 cut(s) | 74, 322, 923 |
| BseX3I | CGGCCG | 2 cut(s) | 392, 1395 |
| BseYI | CCCAGC | 2 cut(s) | 160, 644 |
| BsgI | GTGCAG | 1 cut(s) | 776 |
| Bsh1285I | CGRYCG | 5 cut(s) | 395, 831, 1392, 1398, 1477 |
| BshNI | GGYRCC | 2 cut(s) | 71, 895 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 5 cut(s) | 395, 831, 1392, 1398, 1477 |
| BsiHKAI | GWGCWC | 4 cut(s) | 88, 1282, 1353, 1719 |
| BsiSI | CCGG | 8 cut(s) | 150, 230, 249, 391, 538, 845, 893, 1262 |
| BslFI | GGGAC | 3 cut(s) | 926, 1235, 1633 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 294, 397, 515, 616, 949, 1031, 1091, 1534, 1657 |
| BsmAI | GTCTC | 3 cut(s) | 95, 246, 913 |
| BsmFI | GGGAC | 3 cut(s) | 926, 1235, 1633 |
| BsmI | GAATGC | 3 cut(s) | 90, 379, 799 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| Bsp120I | GGGCCC | 1 cut(s) | 919 |
| Bsp1286I | GDGCHC | 8 cut(s) | 74, 88, 322, 923, 981, 1282, 1353, 1719 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 739, 975 |
| Bsp68I | TCGCGA | 3 cut(s) | 342, 688, 1461 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspMAI | CTGCAG | 2 cut(s) | 382, 1233 |
| BspMI | ACCTGC | 3 cut(s) | 1018, 1236, 1402 |
| BspOI | GCTAGC | 1 cut(s) | 1701 |
| BspPI | GGATC | 5 cut(s) | 500, 818, 831, 1503, 1511 |
| BspQI | GCTCTTC | 1 cut(s) | 661 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 895 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrBI | CCGCTC | 1 cut(s) | 349 |
| BsrFI | RCCGGY | 4 cut(s) | 390, 537, 844, 892 |
| BsrI | ACTGG | 2 cut(s) | 75, 411 |
| BssAI | RCCGGY | 4 cut(s) | 390, 537, 844, 892 |
| BssECI | CCNNGG | 8 cut(s) | 66, 321, 509, 510, 1017, 1199, 1240, 1392 |
| BssNI | GRCGYC | 3 cut(s) | 189, 896, 939 |
| Bst2UI | CCWGG | 8 cut(s) | 67, 323, 511, 1019, 1200, 1241, 1408, 1658 |
| Bst4CI | ACNGT | 1 cut(s) | 1582 |
| Bst6I | CTCTTC | 3 cut(s) | 661, 783, 807 |
| BstACI | GRCGYC | 3 cut(s) | 189, 896, 939 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 427 |
| BstBAI | YACGTR | 1 cut(s) | 639 |
| BstC8I | GCNNGC | 9 cut(s) | 88, 351, 392, 690, 852, 900, 981, 1669, 1699 |
| BstDSI | CCRYGG | 1 cut(s) | 1392 |
| BstF5I | GGATG | 4 cut(s) | 225, 305, 1122, 1333 |
| BstH2I | RGCGCY | 4 cut(s) | 695, 851, 899, 1637 |
| BstHHI | GCGC | 9 cut(s) | 355, 694, 850, 898, 1268, 1372, 1600, 1636, 1685 |
| BstMAI | GTCTC | 3 cut(s) | 95, 246, 913 |
| BstMCI | CGRYCG | 5 cut(s) | 395, 831, 1392, 1398, 1477 |
| BstNI | CCWGG | 8 cut(s) | 67, 323, 511, 1019, 1200, 1241, 1408, 1658 |
| BstNSI | RCATGY | 1 cut(s) | 631 |
| BstSFI | CTRYAG | 3 cut(s) | 378, 437, 1229 |
| BstSLI | GKGCMC | 3 cut(s) | 74, 322, 923 |
| BstSNI | TACGTA | 1 cut(s) | 639 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 4 cut(s) | 358, 823, 1495, 1503 |
| BstYI | RGATCY | 4 cut(s) | 358, 823, 1495, 1503 |
| BstZI | CGGCCG | 2 cut(s) | 392, 1395 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| Bsu36I | CCTNAGG | 1 cut(s) | 873 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 1392 |
| BtgZI | GCGATG | 2 cut(s) | 178, 1658 |
| BtsCI | GGATG | 4 cut(s) | 225, 305, 1122, 1333 |
| BtsIMutI | CAGTG | 2 cut(s) | 726, 1320 |
| BtuMI | TCGCGA | 3 cut(s) | 342, 688, 1461 |
| BveI | ACCTGC | 3 cut(s) | 1018, 1236, 1402 |
| Cac8I | GCNNGC | 9 cut(s) | 88, 351, 392, 690, 852, 900, 981, 1669, 1699 |
| CciNI | GCGGCCGC | 1 cut(s) | 1395 |
| CfoI | GCGC | 9 cut(s) | 355, 694, 850, 898, 1268, 1372, 1600, 1636, 1685 |
| Cfr10I | RCCGGY | 4 cut(s) | 390, 537, 844, 892 |
| Cfr42I | CCGCGG | 1 cut(s) | 1395 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 5 cut(s) | 197, 818, 843, 1477, 1703 |
| Csp6I | GTAC | 5 cut(s) | 383, 424, 1052, 1298, 1314 |
| CviAII | CATG | 5 cut(s) | 199, 628, 818, 994, 1736 |
| CviQI | GTAC | 5 cut(s) | 383, 424, 1052, 1298, 1314 |
| DinI | GGCGCC | 1 cut(s) | 897 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1242 |
| EaeI | YGGCCR | 3 cut(s) | 302, 392, 1395 |
| EagI | CGGCCG | 2 cut(s) | 392, 1395 |
| Eam1104I | CTCTTC | 3 cut(s) | 661, 783, 807 |
| EarI | CTCTTC | 3 cut(s) | 661, 783, 807 |
| Ecl136II | GAGCTC | 2 cut(s) | 1280, 1351 |
| EclXI | CGGCCG | 2 cut(s) | 392, 1395 |
| Eco105I | TACGTA | 1 cut(s) | 639 |
| Eco24I | GRGCYC | 4 cut(s) | 923, 981, 1282, 1353 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco32I | GATATC | 1 cut(s) | 330 |
| Eco47I | GGWCC | 4 cut(s) | 63, 232, 1524, 1537 |
| Eco52I | CGGCCG | 2 cut(s) | 392, 1395 |
| Eco53kI | GAGCTC | 2 cut(s) | 1280, 1351 |
| Eco57I | CTGAAG | 2 cut(s) | 642, 1152 |
| Eco81I | CCTNAGG | 1 cut(s) | 873 |
| EcoICRI | GAGCTC | 2 cut(s) | 1280, 1351 |
| EcoO109I | RGGNCCY | 3 cut(s) | 919, 920, 1537 |
| EcoRII | CCWGG | 8 cut(s) | 65, 321, 509, 1017, 1198, 1239, 1406, 1656 |
| EcoRV | GATATC | 1 cut(s) | 330 |
| EcoT38I | GRGCYC | 4 cut(s) | 923, 981, 1282, 1353 |
| EgeI | GGCGCC | 1 cut(s) | 897 |
| EheI | GGCGCC | 1 cut(s) | 897 |
| FaeI | CATG | 5 cut(s) | 202, 631, 821, 997, 1739 |
| FaqI | GGGAC | 3 cut(s) | 926, 1235, 1633 |
| FatI | CATG | 5 cut(s) | 198, 627, 817, 993, 1735 |
| FauI | CCCGC | 4 cut(s) | 342, 907, 988, 1732 |
| FokI | GGATG | 4 cut(s) | 212, 292, 1109, 1340 |
| FriOI | GRGCYC | 4 cut(s) | 923, 981, 1282, 1353 |
| FspBI | CTAG | 6 cut(s) | 98, 155, 362, 1469, 1637, 1698 |
| FspI | TGCGCA | 1 cut(s) | 1599 |
| GlaI | GCGC | 9 cut(s) | 354, 693, 849, 897, 1267, 1371, 1599, 1635, 1684 |
| GsaI | CCCAGC | 2 cut(s) | 164, 648 |
| GsuI | CTGGAG | 2 cut(s) | 654, 1182 |
| HaeII | RGCGCY | 4 cut(s) | 695, 851, 899, 1637 |
| HapII | CCGG | 8 cut(s) | 150, 230, 249, 391, 538, 845, 893, 1262 |
| HgaI | GACGC | 5 cut(s) | 197, 818, 843, 1477, 1703 |
| HhaI | GCGC | 9 cut(s) | 355, 694, 850, 898, 1268, 1372, 1600, 1636, 1685 |
| Hin1I | GRCGYC | 3 cut(s) | 189, 896, 939 |
| Hin1II | CATG | 5 cut(s) | 202, 631, 821, 997, 1739 |
| Hin6I | GCGC | 9 cut(s) | 353, 692, 848, 896, 1266, 1370, 1598, 1634, 1683 |
| HinP1I | GCGC | 9 cut(s) | 353, 692, 848, 896, 1266, 1370, 1598, 1634, 1683 |
| HinfI | GANTC | 6 cut(s) | 244, 448, 1000, 1236, 1463, 1483 |
| HpaII | CCGG | 8 cut(s) | 150, 230, 249, 391, 538, 845, 893, 1262 |
| HphI | GGTGA | 3 cut(s) | 104, 134, 849 |
| Hpy99I | CGWCG | 5 cut(s) | 222, 472, 475, 627, 1697 |
| HpyAV | CCTTC | 7 cut(s) | 137, 234, 411, 509, 644, 983, 1529 |
| HpyCH4III | ACNGT | 1 cut(s) | 1582 |
| HpyCH4IV | ACGT | 3 cut(s) | 638, 939, 1312 |
| HpyCH4V | TGCA | 7 cut(s) | 380, 757, 797, 929, 1231, 1357, 1439 |
| HpySE526I | ACGT | 3 cut(s) | 638, 939, 1312 |
| Hsp92I | GRCGYC | 3 cut(s) | 189, 896, 939 |
| Hsp92II | CATG | 5 cut(s) | 202, 631, 821, 997, 1739 |
| HspAI | GCGC | 9 cut(s) | 353, 692, 848, 896, 1266, 1370, 1598, 1634, 1683 |
| KasI | GGCGCC | 1 cut(s) | 895 |
| KroI | GCCGGC | 1 cut(s) | 390 |
| KroNI | GCCGGC | 1 cut(s) | 392 |
| KspI | CCGCGG | 1 cut(s) | 1395 |
| LguI | GCTCTTC | 1 cut(s) | 661 |
| LmnI | GCTCC | 5 cut(s) | 10, 346, 556, 1198, 1606 |
| LweI | GCATC | 1 cut(s) | 1105 |
| MaeI | CTAG | 6 cut(s) | 98, 155, 362, 1469, 1637, 1698 |
| MaeII | ACGT | 3 cut(s) | 638, 939, 1312 |
| MaeIII | GTNAC | 4 cut(s) | 855, 935, 1576, 1582 |
| MbiI | CCGCTC | 1 cut(s) | 349 |
| MflI | RGATCY | 4 cut(s) | 358, 823, 1495, 1503 |
| MhlI | GDGCHC | 8 cut(s) | 74, 88, 322, 923, 981, 1282, 1353, 1719 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 5 cut(s) | 41, 298, 570, 1331, 1571 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| Mly113I | GGCGCC | 1 cut(s) | 896 |
| MlyI | GAGTC | 3 cut(s) | 238, 1230, 1457 |
| MmeI | TCCRAC | 1 cut(s) | 241 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| MroNI | GCCGGC | 1 cut(s) | 390 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspA1I | CMGCKG | 7 cut(s) | 397, 442, 662, 959, 983, 1271, 1394 |
| MspI | CCGG | 8 cut(s) | 150, 230, 249, 391, 538, 845, 893, 1262 |
| Mva1269I | GAATGC | 3 cut(s) | 90, 379, 799 |
| MvaI | CCWGG | 8 cut(s) | 67, 323, 511, 1019, 1200, 1241, 1408, 1658 |
| NaeI | GCCGGC | 1 cut(s) | 392 |
| NarI | GGCGCC | 1 cut(s) | 896 |
| NciI | CCSGG | 4 cut(s) | 151, 230, 249, 1263 |
| NgoMIV | GCCGGC | 1 cut(s) | 390 |
| NheI | GCTAGC | 1 cut(s) | 1697 |
| NlaIII | CATG | 5 cut(s) | 202, 631, 821, 997, 1739 |
| NmuCI | GTSAC | 4 cut(s) | 855, 935, 1576, 1582 |
| NotI | GCGGCCGC | 1 cut(s) | 1395 |
| NruI | TCGCGA | 3 cut(s) | 342, 688, 1461 |
| NsbI | TGCGCA | 1 cut(s) | 1599 |
| NspI | RCATGY | 1 cut(s) | 631 |
| PasI | CCCWGGG | 1 cut(s) | 510 |
| PciSI | GCTCTTC | 1 cut(s) | 661 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1116, 1309 |
| PctI | GAATGC | 3 cut(s) | 90, 379, 799 |
| PdiI | GCCGGC | 1 cut(s) | 392 |
| PfeI | GAWTC | 3 cut(s) | 448, 1000, 1483 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1657 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| Ple19I | CGATCG | 2 cut(s) | 831, 1477 |
| PleI | GAGTC | 3 cut(s) | 238, 1230, 1457 |
| PluTI | GGCGCC | 1 cut(s) | 899 |
| PpsI | GAGTC | 3 cut(s) | 238, 1230, 1457 |
| Ppu21I | YACGTR | 1 cut(s) | 639 |
| PpuMI | RGGWCCY | 1 cut(s) | 1537 |
| Psp124BI | GAGCTC | 2 cut(s) | 1282, 1353 |
| Psp5II | RGGWCCY | 1 cut(s) | 1537 |
| Psp6I | CCWGG | 8 cut(s) | 65, 321, 509, 1017, 1198, 1239, 1406, 1656 |
| PspFI | CCCAGC | 2 cut(s) | 160, 644 |
| PspGI | CCWGG | 8 cut(s) | 65, 321, 509, 1017, 1198, 1239, 1406, 1656 |
| PspOMI | GGGCCC | 1 cut(s) | 919 |
| PspPPI | RGGWCCY | 1 cut(s) | 1537 |
| PstI | CTGCAG | 2 cut(s) | 382, 1233 |
| PsuI | RGATCY | 4 cut(s) | 358, 823, 1495, 1503 |
| PvuI | CGATCG | 2 cut(s) | 831, 1477 |
| PvuII | CAGCTG | 3 cut(s) | 442, 662, 1271 |
| RruI | TCGCGA | 3 cut(s) | 342, 688, 1461 |
| RsaI | GTAC | 5 cut(s) | 384, 425, 1053, 1299, 1315 |
| RsaNI | GTAC | 5 cut(s) | 383, 424, 1052, 1298, 1314 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SacI | GAGCTC | 2 cut(s) | 1282, 1353 |
| SacII | CCGCGG | 1 cut(s) | 1395 |
| SapI | GCTCTTC | 1 cut(s) | 661 |
| ScaI | AGTACT | 2 cut(s) | 384, 425 |
| SchI | GAGTC | 3 cut(s) | 238, 1230, 1457 |
| SduI | GDGCHC | 8 cut(s) | 74, 88, 322, 923, 981, 1282, 1353, 1719 |
| SfaNI | GCATC | 1 cut(s) | 1105 |
| SfcI | CTRYAG | 3 cut(s) | 378, 437, 1229 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1403 |
| SfoI | GGCGCC | 1 cut(s) | 897 |
| Sfr303I | CCGCGG | 1 cut(s) | 1395 |
| SgrAI | CRCCGGYG | 1 cut(s) | 844 |
| SgrBI | CCGCGG | 1 cut(s) | 1395 |
| SinI | GGWCC | 4 cut(s) | 63, 232, 1524, 1537 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| SmlI | CTYRAG | 4 cut(s) | 885, 1086, 1281, 1662 |
| SmoI | CTYRAG | 4 cut(s) | 885, 1086, 1281, 1662 |
| SnaBI | TACGTA | 1 cut(s) | 639 |
| Sse9I | AATT | 5 cut(s) | 41, 298, 570, 1331, 1571 |
| SspDI | GGCGCC | 1 cut(s) | 895 |
| SspMI | CTAG | 6 cut(s) | 98, 155, 362, 1469, 1637, 1698 |
| SstI | GAGCTC | 2 cut(s) | 1282, 1353 |
| TaaI | ACNGT | 1 cut(s) | 1582 |
| TaiI | ACGT | 3 cut(s) | 641, 942, 1315 |
| TaqI | TCGA | 7 cut(s) | 27, 283, 1185, 1308, 1477, 1557, 1744 |
| TasI | AATT | 5 cut(s) | 41, 298, 570, 1331, 1571 |
| TatI | WGTACW | 2 cut(s) | 382, 423 |
| TauI | GCSGC | 7 cut(s) | 397, 959, 1070, 1375, 1397, 1400, 1434 |
| TfiI | GAWTC | 3 cut(s) | 448, 1000, 1483 |
| TscAI | CASTG | 2 cut(s) | 733, 1327 |
| TseFI | GTSAC | 4 cut(s) | 855, 935, 1576, 1582 |
| Tsp45I | GTSAC | 4 cut(s) | 855, 935, 1576, 1582 |
| TspDTI | ATGAA | 7 cut(s) | 83, 537, 795, 1002, 1227, 1344, 1694 |
| TspGWI | ACGGA | 1 cut(s) | 800 |
| TspRI | CASTG | 2 cut(s) | 733, 1327 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1657 |
| VpaK11BI | GGWCC | 4 cut(s) | 63, 232, 1524, 1537 |
| XapI | RAATTY | 1 cut(s) | 1331 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XceI | RCATGY | 1 cut(s) | 631 |
| XspI | CTAG | 6 cut(s) | 98, 155, 362, 1469, 1637, 1698 |
| ZraI | GACGTC | 1 cut(s) | 940 |
| ZrmI | AGTACT | 2 cut(s) | 384, 425 |