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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 495 |
| Acc36I | ACCTGC | 1 cut(s) | 1363 |
| AccB1I | GGYRCC | 1 cut(s) | 760 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 566 |
| AciI | CCGC | 8 cut(s) | 109, 467, 532, 609, 1043, 1091, 1097, 1381 |
| AclWI | GGATC | 4 cut(s) | 456, 505, 1338, 1515 |
| AcoI | YGGCCR | 2 cut(s) | 594, 1536 |
| AcuI | CTGAAG | 4 cut(s) | 381, 468, 564, 1496 |
| AcyI | GRCGYC | 2 cut(s) | 761, 1229 |
| AfaI | GTAC | 4 cut(s) | 912, 1152, 1269, 1453 |
| AgsI | TTSAA | 7 cut(s) | 50, 833, 863, 948, 1157, 1295, 1471 |
| AjnI | CCWGG | 6 cut(s) | 73, 513, 879, 1168, 1216, 1538 |
| AluBI | AGCT | 5 cut(s) | 96, 163, 707, 849, 1145 |
| AluI | AGCT | 5 cut(s) | 96, 163, 707, 849, 1145 |
| Alw26I | GTCTC | 1 cut(s) | 1211 |
| AlwI | GGATC | 4 cut(s) | 456, 505, 1338, 1515 |
| Ama87I | CYCGRG | 2 cut(s) | 65, 891 |
| AoxI | GGCC | 9 cut(s) | 196, 265, 278, 594, 606, 670, 1195, 1515, 1536 |
| ApeKI | GCWGC | 3 cut(s) | 800, 1046, 1358 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 670, 702 |
| AsuC2I | CCSGG | 5 cut(s) | 66, 67, 593, 1363, 1448 |
| AsuHPI | GGTGA | 1 cut(s) | 968 |
| AsuNHI | GCTAGC | 1 cut(s) | 1141 |
| AvaI | CYCGRG | 2 cut(s) | 65, 891 |
| AvaII | GGWCC | 7 cut(s) | 327, 693, 717, 1214, 1365, 1383, 1494 |
| AxyI | CCTNAGG | 1 cut(s) | 855 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 894, 927 |
| BanI | GGYRCC | 1 cut(s) | 760 |
| BanII | GRGCYC | 3 cut(s) | 73, 540, 1242 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 855, 887, 975, 1007 |
| BbsI | GAAGAC | 2 cut(s) | 456, 654 |
| BbvI | GCAGC | 3 cut(s) | 787, 1033, 1370 |
| BccI | CCATC | 7 cut(s) | 344, 395, 662, 800, 1079, 1295, 1494 |
| BceAI | ACGGC | 2 cut(s) | 1034, 1551 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1407, 1441 |
| BciT130I | CCWGG | 6 cut(s) | 75, 515, 881, 1170, 1218, 1540 |
| BcnI | CCSGG | 5 cut(s) | 66, 67, 593, 1363, 1448 |
| BcoDI | GTCTC | 1 cut(s) | 1211 |
| BfaI | CTAG | 4 cut(s) | 17, 821, 1142, 1233 |
| BfmI | CTRYAG | 1 cut(s) | 79 |
| BfoI | RGCGCY | 2 cut(s) | 764, 935 |
| BfuAI | ACCTGC | 1 cut(s) | 1363 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 195 |
| BisI | GCNGC | 6 cut(s) | 109, 609, 801, 1044, 1047, 1359 |
| BlsI | GCNGC | 6 cut(s) | 110, 610, 802, 1045, 1048, 1360 |
| Bme18I | GGWCC | 7 cut(s) | 327, 693, 717, 1214, 1365, 1383, 1494 |
| BmeT110I | CYCGRG | 2 cut(s) | 65, 891 |
| BmrI | ACTGGG | 2 cut(s) | 285, 1294 |
| BmsI | GCATC | 2 cut(s) | 406, 1174 |
| BmtI | GCTAGC | 1 cut(s) | 1145 |
| BmuI | ACTGGG | 2 cut(s) | 285, 1294 |
| BpiI | GAAGAC | 2 cut(s) | 456, 654 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1182, 1214 |
| BpmI | CTGGAG | 2 cut(s) | 1031, 1191 |
| Bpu10I | CCTNAGC | 1 cut(s) | 756 |
| BpuEI | CTTGAG | 1 cut(s) | 1016 |
| BpuMI | CCSGG | 5 cut(s) | 66, 67, 593, 1363, 1448 |
| BsaBI | GATNNNNATC | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 2 cut(s) | 761, 1229 |
| BsaJI | CCNNGG | 4 cut(s) | 65, 66, 591, 1447 |
| BsaWI | WCCGGW | 1 cut(s) | 1564 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 265, 295 |
| Bse1I | ACTGG | 7 cut(s) | 280, 329, 604, 772, 974, 1137, 1300 |
| Bse21I | CCTNAGG | 1 cut(s) | 855 |
| Bse8I | GATNNNNATC | 1 cut(s) | 527 |
| BseBI | CCWGG | 6 cut(s) | 75, 515, 881, 1170, 1218, 1540 |
| BseDI | CCNNGG | 4 cut(s) | 65, 66, 591, 1447 |
| BseGI | GGATG | 2 cut(s) | 355, 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 527 |
| BseMII | CTCAG | 4 cut(s) | 417, 770, 846, 1504 |
| BseNI | ACTGG | 7 cut(s) | 280, 329, 604, 772, 974, 1137, 1300 |
| BseRI | GAGGAG | 3 cut(s) | 212, 643, 1155 |
| BseXI | GCAGC | 3 cut(s) | 787, 1033, 1370 |
| BseYI | CCCAGC | 2 cut(s) | 518, 707 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1447 |
| BshFI | GGCC | 9 cut(s) | 198, 267, 280, 596, 608, 672, 1197, 1517, 1538 |
| BshNI | GGYRCC | 1 cut(s) | 760 |
| BsiEI | CGRYCG | 1 cut(s) | 1447 |
| BsiHKCI | CYCGRG | 2 cut(s) | 65, 891 |
| BsiSI | CCGG | 5 cut(s) | 66, 593, 1362, 1447, 1565 |
| BslFI | GGGAC | 2 cut(s) | 1227, 1378 |
| BsmAI | GTCTC | 1 cut(s) | 1211 |
| BsmBI | CGTCTC | 1 cut(s) | 1211 |
| BsmFI | GGGAC | 2 cut(s) | 1227, 1378 |
| BsnI | GGCC | 9 cut(s) | 198, 267, 280, 596, 608, 672, 1197, 1517, 1538 |
| BsoBI | CYCGRG | 2 cut(s) | 65, 891 |
| Bsp1286I | GDGCHC | 3 cut(s) | 73, 540, 1242 |
| Bsp143I | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| BspACI | CCGC | 8 cut(s) | 109, 467, 532, 609, 1043, 1091, 1097, 1381 |
| BspANI | GGCC | 9 cut(s) | 198, 267, 280, 596, 608, 672, 1197, 1517, 1538 |
| BspCNI | CTCAG | 4 cut(s) | 418, 769, 847, 1503 |
| BspMI | ACCTGC | 1 cut(s) | 1363 |
| BspOI | GCTAGC | 1 cut(s) | 1145 |
| BspPI | GGATC | 4 cut(s) | 456, 505, 1338, 1515 |
| BspT107I | GGYRCC | 1 cut(s) | 760 |
| BsrI | ACTGG | 7 cut(s) | 280, 329, 604, 772, 974, 1137, 1300 |
| BssECI | CCNNGG | 4 cut(s) | 65, 66, 591, 1447 |
| BssMI | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| BssNI | GRCGYC | 2 cut(s) | 761, 1229 |
| Bst2UI | CCWGG | 6 cut(s) | 75, 515, 881, 1170, 1218, 1540 |
| Bst4CI | ACNGT | 5 cut(s) | 83, 682, 829, 907, 982 |
| Bst6I | CTCTTC | 3 cut(s) | 357, 540, 661 |
| BstACI | GRCGYC | 2 cut(s) | 761, 1229 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 584 |
| BstDEI | CTNAG | 7 cut(s) | 152, 401, 426, 756, 855, 1438, 1490 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| BstF5I | GGATG | 2 cut(s) | 355, 373 |
| BstH2I | RGCGCY | 2 cut(s) | 764, 935 |
| BstKTI | GATC | 8 cut(s) | 88, 117, 316, 464, 513, 967, 1333, 1510 |
| BstMAI | GTCTC | 1 cut(s) | 1211 |
| BstMBI | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| BstMCI | CGRYCG | 1 cut(s) | 1447 |
| BstNI | CCWGG | 6 cut(s) | 75, 515, 881, 1170, 1218, 1540 |
| BstNSI | RCATGY | 1 cut(s) | 301 |
| BstSFI | CTRYAG | 1 cut(s) | 79 |
| BstV1I | GCAGC | 3 cut(s) | 787, 1033, 1370 |
| BstV2I | GAAGAC | 2 cut(s) | 456, 654 |
| BstX2I | RGATCY | 2 cut(s) | 1330, 1507 |
| BstYI | RGATCY | 2 cut(s) | 1330, 1507 |
| Bsu36I | CCTNAGG | 1 cut(s) | 855 |
| BsuRI | GGCC | 9 cut(s) | 198, 267, 280, 596, 608, 672, 1197, 1517, 1538 |
| BtgZI | GCGATG | 1 cut(s) | 322 |
| BtsCI | GGATG | 2 cut(s) | 355, 373 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 597, 802, 981 |
| BveI | ACCTGC | 1 cut(s) | 1363 |
| Cfr9I | CCCGGG | 1 cut(s) | 65 |
| CseI | GACGC | 3 cut(s) | 464, 1103, 1237 |
| CsiI | ACCWGGT | 1 cut(s) | 1216 |
| Csp6I | GTAC | 4 cut(s) | 911, 1151, 1268, 1452 |
| CviAII | CATG | 3 cut(s) | 298, 919, 1550 |
| CviQI | GTAC | 4 cut(s) | 911, 1151, 1268, 1452 |
| DdeI | CTNAG | 7 cut(s) | 152, 401, 426, 756, 855, 1438, 1490 |
| DinI | GGCGCC | 1 cut(s) | 762 |
| DpnI | GATC | 8 cut(s) | 87, 116, 315, 463, 512, 966, 1332, 1509 |
| DpnII | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| EaeI | YGGCCR | 2 cut(s) | 594, 1536 |
| Eam1104I | CTCTTC | 3 cut(s) | 357, 540, 661 |
| EarI | CTCTTC | 3 cut(s) | 357, 540, 661 |
| EciI | GGCGGA | 1 cut(s) | 1396 |
| Eco147I | AGGCCT | 1 cut(s) | 1197 |
| Eco24I | GRGCYC | 3 cut(s) | 73, 540, 1242 |
| Eco32I | GATATC | 1 cut(s) | 407 |
| Eco47I | GGWCC | 7 cut(s) | 327, 693, 717, 1214, 1365, 1383, 1494 |
| Eco57I | CTGAAG | 4 cut(s) | 381, 468, 564, 1496 |
| Eco81I | CCTNAGG | 1 cut(s) | 855 |
| Eco88I | CYCGRG | 2 cut(s) | 65, 891 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| EcoO109I | RGGNCCY | 3 cut(s) | 717, 1214, 1494 |
| EcoRII | CCWGG | 6 cut(s) | 73, 513, 879, 1168, 1216, 1538 |
| EcoRV | GATATC | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 3 cut(s) | 73, 540, 1242 |
| EgeI | GGCGCC | 1 cut(s) | 762 |
| EheI | GGCGCC | 1 cut(s) | 762 |
| Esp3I | CGTCTC | 1 cut(s) | 1211 |
| FaeI | CATG | 3 cut(s) | 301, 922, 1553 |
| FaiI | YATR | 8 cut(s) | 159, 228, 299, 809, 839, 920, 1178, 1551 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1129, 1161 |
| FaqI | GGGAC | 2 cut(s) | 1227, 1378 |
| FatI | CATG | 3 cut(s) | 297, 918, 1549 |
| FauI | CCCGC | 1 cut(s) | 474 |
| Fnu4HI | GCNGC | 6 cut(s) | 109, 609, 801, 1044, 1047, 1359 |
| FokI | GGATG | 2 cut(s) | 362, 380 |
| FriOI | GRGCYC | 3 cut(s) | 73, 540, 1242 |
| Fsp4HI | GCNGC | 6 cut(s) | 109, 609, 801, 1044, 1047, 1359 |
| FspBI | CTAG | 4 cut(s) | 17, 821, 1142, 1233 |
| FspI | TGCGCA | 1 cut(s) | 495 |
| GluI | GCNGC | 6 cut(s) | 109, 609, 801, 1044, 1047, 1359 |
| GsaI | CCCAGC | 2 cut(s) | 522, 711 |
| GsuI | CTGGAG | 2 cut(s) | 1031, 1191 |
| HaeII | RGCGCY | 2 cut(s) | 764, 935 |
| HaeIII | GGCC | 9 cut(s) | 198, 267, 280, 596, 608, 672, 1197, 1517, 1538 |
| HapII | CCGG | 5 cut(s) | 66, 593, 1362, 1447, 1565 |
| HgaI | GACGC | 3 cut(s) | 464, 1103, 1237 |
| Hin1I | GRCGYC | 2 cut(s) | 761, 1229 |
| Hin1II | CATG | 3 cut(s) | 301, 922, 1553 |
| HinfI | GANTC | 6 cut(s) | 33, 650, 938, 1015, 1162, 1501 |
| HpaII | CCGG | 5 cut(s) | 66, 593, 1362, 1447, 1565 |
| HphI | GGTGA | 1 cut(s) | 968 |
| Hpy166II | GTNNAC | 1 cut(s) | 696 |
| Hpy188I | TCNGA | 4 cut(s) | 127, 661, 1227, 1401 |
| Hpy188III | TCNNGA | 9 cut(s) | 235, 446, 893, 968, 995, 1010, 1128, 1492, 1505 |
| Hpy8I | GTNNAC | 1 cut(s) | 696 |
| Hpy99I | CGWCG | 3 cut(s) | 458, 690, 1206 |
| HpyAV | CCTTC | 8 cut(s) | 71, 573, 625, 707, 1001, 1134, 1187, 1465 |
| HpyCH4III | ACNGT | 5 cut(s) | 83, 682, 829, 907, 982 |
| HpyCH4V | TGCA | 5 cut(s) | 305, 383, 803, 811, 1327 |
| HpyF3I | CTNAG | 7 cut(s) | 152, 401, 426, 756, 855, 1438, 1490 |
| Hsp92I | GRCGYC | 2 cut(s) | 761, 1229 |
| Hsp92II | CATG | 3 cut(s) | 301, 922, 1553 |
| KasI | GGCGCC | 1 cut(s) | 760 |
| Kzo9I | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| LmnI | GCTCC | 4 cut(s) | 76, 346, 487, 1283 |
| Lsp1109I | GCAGC | 3 cut(s) | 787, 1033, 1370 |
| LweI | GCATC | 2 cut(s) | 406, 1174 |
| MabI | ACCWGGT | 1 cut(s) | 1216 |
| MaeI | CTAG | 4 cut(s) | 17, 821, 1142, 1233 |
| MaeIII | GTNAC | 6 cut(s) | 211, 823, 976, 1159, 1474, 1531 |
| MalI | GATC | 8 cut(s) | 87, 116, 315, 463, 512, 966, 1332, 1509 |
| MboI | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| MboII | GAAGA | 8 cut(s) | 42, 374, 461, 557, 648, 659, 875, 1502 |
| MflI | RGATCY | 2 cut(s) | 1330, 1507 |
| MhlI | GDGCHC | 3 cut(s) | 73, 540, 1242 |
| MluCI | AATT | 5 cut(s) | 191, 206, 261, 948, 1520 |
| Mly113I | GGCGCC | 1 cut(s) | 761 |
| MlyI | GAGTC | 2 cut(s) | 644, 1156 |
| MseI | TTAA | 2 cut(s) | 582, 1523 |
| MspI | CCGG | 5 cut(s) | 66, 593, 1362, 1447, 1565 |
| MvaI | CCWGG | 6 cut(s) | 75, 515, 881, 1170, 1218, 1540 |
| NarI | GGCGCC | 1 cut(s) | 761 |
| NciI | CCSGG | 5 cut(s) | 66, 67, 593, 1363, 1448 |
| NdeII | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| NheI | GCTAGC | 1 cut(s) | 1141 |
| NlaIII | CATG | 3 cut(s) | 301, 922, 1553 |
| NmuCI | GTSAC | 4 cut(s) | 211, 823, 976, 1159 |
| NsbI | TGCGCA | 1 cut(s) | 495 |
| NspI | RCATGY | 1 cut(s) | 301 |
| PaeI | GCATGC | 1 cut(s) | 301 |
| PaeR7I | CTCGAG | 1 cut(s) | 891 |
| PceI | AGGCCT | 1 cut(s) | 1197 |
| PfeI | GAWTC | 4 cut(s) | 33, 938, 1015, 1501 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 566 |
| PfoI | TCCNGGA | 2 cut(s) | 879, 1168 |
| PkrI | GCNGC | 6 cut(s) | 110, 610, 802, 1045, 1048, 1360 |
| PleI | GAGTC | 2 cut(s) | 644, 1156 |
| PluTI | GGCGCC | 1 cut(s) | 764 |
| PpsI | GAGTC | 2 cut(s) | 644, 1156 |
| PpuMI | RGGWCCY | 3 cut(s) | 717, 1214, 1494 |
| Psp5II | RGGWCCY | 3 cut(s) | 717, 1214, 1494 |
| Psp6I | CCWGG | 6 cut(s) | 73, 513, 879, 1168, 1216, 1538 |
| PspFI | CCCAGC | 2 cut(s) | 518, 707 |
| PspGI | CCWGG | 6 cut(s) | 73, 513, 879, 1168, 1216, 1538 |
| PspPPI | RGGWCCY | 3 cut(s) | 717, 1214, 1494 |
| PsuI | RGATCY | 2 cut(s) | 1330, 1507 |
| RsaI | GTAC | 4 cut(s) | 912, 1152, 1269, 1453 |
| RsaNI | GTAC | 4 cut(s) | 911, 1151, 1268, 1452 |
| SaqAI | TTAA | 2 cut(s) | 582, 1523 |
| SatI | GCNGC | 6 cut(s) | 109, 609, 801, 1044, 1047, 1359 |
| Sau3AI | GATC | 8 cut(s) | 85, 114, 313, 461, 510, 964, 1330, 1507 |
| SchI | GAGTC | 2 cut(s) | 644, 1156 |
| SduI | GDGCHC | 3 cut(s) | 73, 540, 1242 |
| SexAI | ACCWGGT | 1 cut(s) | 1216 |
| SfaNI | GCATC | 2 cut(s) | 406, 1174 |
| SfcI | CTRYAG | 1 cut(s) | 79 |
| SfoI | GGCGCC | 1 cut(s) | 762 |
| Sfr274I | CTCGAG | 1 cut(s) | 891 |
| SinI | GGWCC | 7 cut(s) | 327, 693, 717, 1214, 1365, 1383, 1494 |
| SlaI | CTCGAG | 1 cut(s) | 891 |
| SmaI | CCCGGG | 1 cut(s) | 67 |
| SmlI | CTYRAG | 2 cut(s) | 891, 995 |
| SmoI | CTYRAG | 2 cut(s) | 891, 995 |
| SphI | GCATGC | 1 cut(s) | 301 |
| Sse9I | AATT | 5 cut(s) | 191, 206, 261, 948, 1520 |
| SseBI | AGGCCT | 1 cut(s) | 1197 |
| SsiI | CCGC | 8 cut(s) | 109, 467, 532, 609, 1043, 1091, 1097, 1381 |
| SspDI | GGCGCC | 1 cut(s) | 760 |
| SspMI | CTAG | 4 cut(s) | 17, 821, 1142, 1233 |
| StuI | AGGCCT | 1 cut(s) | 1197 |
| TaaI | ACNGT | 5 cut(s) | 83, 682, 829, 907, 982 |
| TaqI | TCGA | 7 cut(s) | 574, 645, 892, 941, 963, 1029, 1308 |
| TasI | AATT | 5 cut(s) | 191, 206, 261, 948, 1520 |
| TauI | GCSGC | 3 cut(s) | 111, 611, 1046 |
| TfiI | GAWTC | 4 cut(s) | 33, 938, 1015, 1501 |
| Tru1I | TTAA | 2 cut(s) | 582, 1523 |
| Tru9I | TTAA | 2 cut(s) | 582, 1523 |
| TscAI | CASTG | 4 cut(s) | 88, 604, 802, 981 |
| TseFI | GTSAC | 4 cut(s) | 211, 823, 976, 1159 |
| TseI | GCWGC | 3 cut(s) | 800, 1046, 1358 |
| Tsp45I | GTSAC | 4 cut(s) | 211, 823, 976, 1159 |
| TspDTI | ATGAA | 2 cut(s) | 162, 387 |
| TspGWI | ACGGA | 3 cut(s) | 712, 1190, 1265 |
| TspMI | CCCGGG | 1 cut(s) | 65 |
| TspRI | CASTG | 4 cut(s) | 88, 604, 802, 981 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 566 |
| VpaK11BI | GGWCC | 7 cut(s) | 327, 693, 717, 1214, 1365, 1383, 1494 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1028 |
| XceI | RCATGY | 1 cut(s) | 301 |
| XhoI | CTCGAG | 1 cut(s) | 891 |
| XmaI | CCCGGG | 1 cut(s) | 65 |
| XspI | CTAG | 4 cut(s) | 17, 821, 1142, 1233 |