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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1108 |
| Acc65I | GGTACC | 1 cut(s) | 211 |
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 611 |
| AccBSI | CCGCTC | 1 cut(s) | 762 |
| AccII | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| AclWI | GGATC | 4 cut(s) | 65, 143, 713, 1070 |
| AcoI | YGGCCR | 3 cut(s) | 613, 639, 827 |
| AcsI | RAATTY | 1 cut(s) | 1200 |
| AcuI | CTGAAG | 5 cut(s) | 165, 378, 424, 516, 840 |
| AcyI | GRCGYC | 1 cut(s) | 231 |
| AfaI | GTAC | 3 cut(s) | 8, 213, 1044 |
| AgsI | TTSAA | 3 cut(s) | 476, 524, 1094 |
| AjnI | CCWGG | 6 cut(s) | 64, 96, 558, 610, 652, 782 |
| AluBI | AGCT | 6 cut(s) | 156, 163, 448, 545, 737, 860 |
| AluI | AGCT | 6 cut(s) | 156, 163, 448, 545, 737, 860 |
| Alw21I | GWGCWC | 3 cut(s) | 165, 547, 1006 |
| Alw26I | GTCTC | 2 cut(s) | 394, 687 |
| Alw44I | GTGCAC | 1 cut(s) | 1002 |
| AlwI | GGATC | 4 cut(s) | 65, 143, 713, 1070 |
| Ama87I | CYCGRG | 2 cut(s) | 986, 1025 |
| ApaI | GGGCCC | 4 cut(s) | 270, 282, 331, 908 |
| ApaLI | GTGCAC | 1 cut(s) | 1002 |
| ApeKI | GCWGC | 5 cut(s) | 686, 734, 737, 756, 860 |
| ApoI | RAATTY | 1 cut(s) | 1200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 915 |
| Asp718I | GGTACC | 1 cut(s) | 211 |
| AspLEI | GCGC | 9 cut(s) | 92, 113, 307, 541, 604, 756, 776, 892, 898 |
| AsuC2I | CCSGG | 2 cut(s) | 514, 1052 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| AvaI | CYCGRG | 2 cut(s) | 986, 1025 |
| AvaII | GGWCC | 3 cut(s) | 405, 529, 766 |
| AxyI | CCTNAGG | 1 cut(s) | 274 |
| BaeGI | GKGCMC | 5 cut(s) | 270, 282, 331, 908, 1006 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BanII | GRGCYC | 8 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908 |
| BbsI | GAAGAC | 1 cut(s) | 504 |
| Bbv12I | GWGCWC | 3 cut(s) | 165, 547, 1006 |
| BbvCI | CCTCAGC | 1 cut(s) | 449 |
| BbvI | GCAGC | 5 cut(s) | 698, 724, 746, 768, 847 |
| BccI | CCATC | 3 cut(s) | 46, 344, 344 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 149, 183, 410, 444, 1044, 1078 |
| BciT130I | CCWGG | 6 cut(s) | 66, 98, 560, 612, 654, 784 |
| BcnI | CCSGG | 2 cut(s) | 514, 1052 |
| BcoDI | GTCTC | 2 cut(s) | 394, 687 |
| BfaI | CTAG | 3 cut(s) | 308, 507, 864 |
| BfmI | CTRYAG | 2 cut(s) | 345, 1116 |
| BfoI | RGCGCY | 2 cut(s) | 893, 899 |
| BfuAI | ACCTGC | 1 cut(s) | 1108 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 195 |
| Bme1390I | CCNGG | 8 cut(s) | 66, 98, 514, 560, 612, 654, 784, 1052 |
| Bme18I | GGWCC | 3 cut(s) | 405, 529, 766 |
| BmeT110I | CYCGRG | 2 cut(s) | 986, 1025 |
| BmrFI | CCNGG | 8 cut(s) | 66, 98, 514, 560, 612, 654, 784, 1052 |
| BmsI | GCATC | 1 cut(s) | 1006 |
| BpiI | GAAGAC | 1 cut(s) | 504 |
| BpmI | CTGGAG | 1 cut(s) | 1113 |
| Bpu10I | CCTNAGC | 1 cut(s) | 449 |
| BpuMI | CCSGG | 2 cut(s) | 514, 1052 |
| Bsa29I | ATCGAT | 1 cut(s) | 811 |
| BsaBI | GATNNNNATC | 1 cut(s) | 37 |
| BsaHI | GRCGYC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 9 cut(s) | 512, 558, 610, 782, 783, 900, 1026, 1050, 1083 |
| BsaWI | WCCGGW | 1 cut(s) | 644 |
| Bse118I | RCCGGY | 2 cut(s) | 535, 802 |
| Bse1I | ACTGG | 3 cut(s) | 190, 627, 1130 |
| Bse21I | CCTNAGG | 1 cut(s) | 274 |
| Bse8I | GATNNNNATC | 1 cut(s) | 37 |
| BseBI | CCWGG | 6 cut(s) | 66, 98, 560, 612, 654, 784 |
| BseCI | ATCGAT | 1 cut(s) | 811 |
| BseDI | CCNNGG | 9 cut(s) | 512, 558, 610, 782, 783, 900, 1026, 1050, 1083 |
| BseJI | GATNNNNATC | 1 cut(s) | 37 |
| BseMII | CTCAG | 3 cut(s) | 166, 288, 440 |
| BseNI | ACTGG | 3 cut(s) | 190, 627, 1130 |
| BseRI | GAGGAG | 2 cut(s) | 537, 1043 |
| BseSI | GKGCMC | 5 cut(s) | 270, 282, 331, 908, 1006 |
| BseXI | GCAGC | 5 cut(s) | 698, 724, 746, 768, 847 |
| BseYI | CCCAGC | 2 cut(s) | 553, 842 |
| BsgI | GTGCAG | 1 cut(s) | 983 |
| Bsh1236I | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| Bsh1285I | CGRYCG | 2 cut(s) | 536, 1038 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BshVI | ATCGAT | 1 cut(s) | 811 |
| BsiEI | CGRYCG | 2 cut(s) | 536, 1038 |
| BsiHKAI | GWGCWC | 3 cut(s) | 165, 547, 1006 |
| BsiHKCI | CYCGRG | 2 cut(s) | 986, 1025 |
| BsiSI | CCGG | 9 cut(s) | 514, 536, 590, 638, 645, 690, 803, 992, 1052 |
| BsmAI | GTCTC | 2 cut(s) | 394, 687 |
| BsoBI | CYCGRG | 2 cut(s) | 986, 1025 |
| Bsp120I | GGGCCC | 4 cut(s) | 266, 278, 327, 904 |
| Bsp1286I | GDGCHC | 9 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908, 1006 |
| Bsp1407I | TGTACA | 1 cut(s) | 1042 |
| Bsp143I | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| Bsp68I | TCGCGA | 1 cut(s) | 579 |
| BspCNI | CTCAG | 3 cut(s) | 165, 287, 441 |
| BspDI | ATCGAT | 1 cut(s) | 811 |
| BspFNI | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| BspMI | ACCTGC | 1 cut(s) | 1108 |
| BspPI | GGATC | 4 cut(s) | 65, 143, 713, 1070 |
| BspQI | GCTCTTC | 1 cut(s) | 859 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BsrBI | CCGCTC | 1 cut(s) | 762 |
| BsrFI | RCCGGY | 2 cut(s) | 535, 802 |
| BsrGI | TGTACA | 1 cut(s) | 1042 |
| BsrI | ACTGG | 3 cut(s) | 190, 627, 1130 |
| BssAI | RCCGGY | 2 cut(s) | 535, 802 |
| BssECI | CCNNGG | 9 cut(s) | 512, 558, 610, 782, 783, 900, 1026, 1050, 1083 |
| BssMI | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| BssNI | GRCGYC | 1 cut(s) | 231 |
| Bst2UI | CCWGG | 6 cut(s) | 66, 98, 560, 612, 654, 784 |
| Bst4CI | ACNGT | 4 cut(s) | 11, 730, 937, 980 |
| Bst6I | CTCTTC | 4 cut(s) | 443, 525, 703, 859 |
| BstACI | GRCGYC | 1 cut(s) | 231 |
| BstAUI | TGTACA | 1 cut(s) | 1042 |
| BstDEI | CTNAG | 3 cut(s) | 152, 274, 449 |
| BstDSI | CCRYGG | 1 cut(s) | 900 |
| BstEII | GGTNACC | 1 cut(s) | 1141 |
| BstFNI | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| BstH2I | RGCGCY | 2 cut(s) | 893, 899 |
| BstHHI | GCGC | 9 cut(s) | 92, 113, 307, 541, 604, 756, 776, 892, 898 |
| BstKTI | GATC | 9 cut(s) | 73, 117, 138, 316, 721, 811, 969, 1038, 1078 |
| BstMAI | GTCTC | 2 cut(s) | 394, 687 |
| BstMBI | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| BstMCI | CGRYCG | 2 cut(s) | 536, 1038 |
| BstNI | CCWGG | 6 cut(s) | 66, 98, 560, 612, 654, 784 |
| BstNSI | RCATGY | 2 cut(s) | 301, 842 |
| BstPI | GGTNACC | 1 cut(s) | 1141 |
| BstSCI | CCNGG | 8 cut(s) | 64, 96, 512, 558, 610, 652, 782, 1050 |
| BstSFI | CTRYAG | 2 cut(s) | 345, 1116 |
| BstSLI | GKGCMC | 5 cut(s) | 270, 282, 331, 908, 1006 |
| BstUI | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| BstV1I | GCAGC | 5 cut(s) | 698, 724, 746, 768, 847 |
| BstV2I | GAAGAC | 1 cut(s) | 504 |
| Bsu15I | ATCGAT | 1 cut(s) | 811 |
| Bsu36I | CCTNAGG | 1 cut(s) | 274 |
| BsuTUI | ATCGAT | 1 cut(s) | 811 |
| BtgI | CCRYGG | 1 cut(s) | 900 |
| BtsIMutI | CAGTG | 1 cut(s) | 634 |
| BtuMI | TCGCGA | 1 cut(s) | 579 |
| BveI | ACCTGC | 1 cut(s) | 1108 |
| CfoI | GCGC | 9 cut(s) | 92, 113, 307, 541, 604, 756, 776, 892, 898 |
| Cfr10I | RCCGGY | 2 cut(s) | 535, 802 |
| ClaI | ATCGAT | 1 cut(s) | 811 |
| CseI | GACGC | 2 cut(s) | 239, 350 |
| Csp6I | GTAC | 3 cut(s) | 7, 212, 1043 |
| CviAII | CATG | 4 cut(s) | 298, 606, 839, 1162 |
| CviQI | GTAC | 3 cut(s) | 7, 212, 1043 |
| DdeI | CTNAG | 3 cut(s) | 152, 274, 449 |
| DpnI | GATC | 9 cut(s) | 72, 116, 137, 315, 720, 810, 968, 1037, 1077 |
| DpnII | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| EaeI | YGGCCR | 3 cut(s) | 613, 639, 827 |
| Eam1104I | CTCTTC | 4 cut(s) | 443, 525, 703, 859 |
| EarI | CTCTTC | 4 cut(s) | 443, 525, 703, 859 |
| Ecl136II | GAGCTC | 2 cut(s) | 163, 545 |
| Eco24I | GRGCYC | 8 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908 |
| Eco47I | GGWCC | 3 cut(s) | 405, 529, 766 |
| Eco53kI | GAGCTC | 2 cut(s) | 163, 545 |
| Eco57I | CTGAAG | 5 cut(s) | 165, 378, 424, 516, 840 |
| Eco81I | CCTNAGG | 1 cut(s) | 274 |
| Eco88I | CYCGRG | 2 cut(s) | 986, 1025 |
| Eco91I | GGTNACC | 1 cut(s) | 1141 |
| EcoICRI | GAGCTC | 2 cut(s) | 163, 545 |
| EcoO109I | RGGNCCY | 5 cut(s) | 267, 278, 279, 510, 905 |
| EcoO65I | GGTNACC | 1 cut(s) | 1141 |
| EcoRII | CCWGG | 6 cut(s) | 64, 96, 558, 610, 652, 782 |
| EcoT38I | GRGCYC | 8 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908 |
| FaeI | CATG | 4 cut(s) | 301, 609, 842, 1165 |
| FatI | CATG | 4 cut(s) | 297, 605, 838, 1161 |
| FauI | CCCGC | 4 cut(s) | 194, 291, 594, 691 |
| FriOI | GRGCYC | 8 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908 |
| FspBI | CTAG | 3 cut(s) | 308, 507, 864 |
| GlaI | GCGC | 9 cut(s) | 91, 112, 306, 540, 603, 755, 775, 891, 897 |
| GsaI | CCCAGC | 2 cut(s) | 557, 846 |
| GsuI | CTGGAG | 1 cut(s) | 1113 |
| HaeII | RGCGCY | 2 cut(s) | 893, 899 |
| HapII | CCGG | 9 cut(s) | 514, 536, 590, 638, 645, 690, 803, 992, 1052 |
| HgaI | GACGC | 2 cut(s) | 239, 350 |
| HhaI | GCGC | 9 cut(s) | 92, 113, 307, 541, 604, 756, 776, 892, 898 |
| Hin1I | GRCGYC | 1 cut(s) | 231 |
| Hin1II | CATG | 4 cut(s) | 301, 609, 842, 1165 |
| Hin6I | GCGC | 9 cut(s) | 90, 111, 305, 539, 602, 754, 774, 890, 896 |
| HinP1I | GCGC | 9 cut(s) | 90, 111, 305, 539, 602, 754, 774, 890, 896 |
| HinfI | GANTC | 4 cut(s) | 33, 261, 454, 695 |
| HpaII | CCGG | 9 cut(s) | 514, 536, 590, 638, 645, 690, 803, 992, 1052 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 1004 |
| Hpy188I | TCNGA | 4 cut(s) | 127, 496, 533, 766 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 578, 1073, 1174, 1193 |
| Hpy8I | GTNNAC | 1 cut(s) | 1004 |
| Hpy99I | CGWCG | 6 cut(s) | 233, 344, 422, 734, 825, 828 |
| HpyAV | CCTTC | 3 cut(s) | 356, 782, 926 |
| HpyCH4III | ACNGT | 4 cut(s) | 11, 730, 937, 980 |
| HpyCH4V | TGCA | 8 cut(s) | 237, 431, 964, 1004, 1019, 1103, 1136, 1214 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 274, 449 |
| Hsp92I | GRCGYC | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 301, 609, 842, 1165 |
| HspAI | GCGC | 9 cut(s) | 90, 111, 305, 539, 602, 754, 774, 890, 896 |
| KpnI | GGTACC | 1 cut(s) | 215 |
| Kzo9I | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| LguI | GCTCTTC | 1 cut(s) | 859 |
| LmnI | GCTCC | 4 cut(s) | 175, 255, 550, 1030 |
| Lsp1109I | GCAGC | 5 cut(s) | 698, 724, 746, 768, 847 |
| LweI | GCATC | 1 cut(s) | 1006 |
| MaeI | CTAG | 3 cut(s) | 308, 507, 864 |
| MaeIII | GTNAC | 2 cut(s) | 11, 1141 |
| MalI | GATC | 9 cut(s) | 72, 116, 137, 315, 720, 810, 968, 1037, 1077 |
| MbiI | CCGCTC | 1 cut(s) | 762 |
| MboI | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| MfeI | CAATTG | 3 cut(s) | 206, 397, 1209 |
| MhlI | GDGCHC | 9 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908, 1006 |
| MluCI | AATT | 7 cut(s) | 18, 206, 397, 573, 954, 1200, 1209 |
| MlyI | GAGTC | 1 cut(s) | 689 |
| MmeI | TCCRAC | 1 cut(s) | 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 915 |
| MspA1I | CMGCKG | 3 cut(s) | 143, 737, 860 |
| MspI | CCGG | 9 cut(s) | 514, 536, 590, 638, 645, 690, 803, 992, 1052 |
| MspR9I | CCNGG | 8 cut(s) | 66, 98, 514, 560, 612, 654, 784, 1052 |
| MunI | CAATTG | 3 cut(s) | 206, 397, 1209 |
| MvaI | CCWGG | 6 cut(s) | 66, 98, 560, 612, 654, 784 |
| MvnI | CGCG | 7 cut(s) | 90, 111, 113, 305, 541, 579, 774 |
| NciI | CCSGG | 2 cut(s) | 514, 1052 |
| NdeII | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| NlaIII | CATG | 4 cut(s) | 301, 609, 842, 1165 |
| NmuCI | GTSAC | 1 cut(s) | 11 |
| NruI | TCGCGA | 1 cut(s) | 579 |
| NspI | RCATGY | 2 cut(s) | 301, 842 |
| PaeI | GCATGC | 1 cut(s) | 301 |
| PasI | CCCWGGG | 1 cut(s) | 783 |
| PciSI | GCTCTTC | 1 cut(s) | 859 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 576, 817 |
| PdmI | GAANNNNTTC | 1 cut(s) | 915 |
| PfeI | GAWTC | 3 cut(s) | 33, 261, 454 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 611 |
| Ple19I | CGATCG | 1 cut(s) | 1038 |
| PleI | GAGTC | 1 cut(s) | 689 |
| PpsI | GAGTC | 1 cut(s) | 689 |
| Psp124BI | GAGCTC | 2 cut(s) | 165, 547 |
| Psp6I | CCWGG | 6 cut(s) | 64, 96, 558, 610, 652, 782 |
| PspEI | GGTNACC | 1 cut(s) | 1141 |
| PspFI | CCCAGC | 2 cut(s) | 553, 842 |
| PspGI | CCWGG | 6 cut(s) | 64, 96, 558, 610, 652, 782 |
| PspOMI | GGGCCC | 4 cut(s) | 266, 278, 327, 904 |
| PvuI | CGATCG | 1 cut(s) | 1038 |
| PvuII | CAGCTG | 2 cut(s) | 737, 860 |
| RruI | TCGCGA | 1 cut(s) | 579 |
| RsaI | GTAC | 3 cut(s) | 8, 213, 1044 |
| RsaNI | GTAC | 3 cut(s) | 7, 212, 1043 |
| SacI | GAGCTC | 2 cut(s) | 165, 547 |
| SapI | GCTCTTC | 1 cut(s) | 859 |
| Sau3AI | GATC | 9 cut(s) | 70, 114, 135, 313, 718, 808, 966, 1035, 1075 |
| SchI | GAGTC | 1 cut(s) | 689 |
| ScrFI | CCNGG | 8 cut(s) | 66, 98, 514, 560, 612, 654, 784, 1052 |
| SduI | GDGCHC | 9 cut(s) | 165, 270, 282, 331, 547, 585, 854, 908, 1006 |
| SfaNI | GCATC | 1 cut(s) | 1006 |
| SfcI | CTRYAG | 2 cut(s) | 345, 1116 |
| SinI | GGWCC | 3 cut(s) | 405, 529, 766 |
| SphI | GCATGC | 1 cut(s) | 301 |
| Sse9I | AATT | 7 cut(s) | 18, 206, 397, 573, 954, 1200, 1209 |
| SspMI | CTAG | 3 cut(s) | 308, 507, 864 |
| SstI | GAGCTC | 2 cut(s) | 165, 547 |
| StyD4I | CCNGG | 8 cut(s) | 64, 96, 512, 558, 610, 652, 782, 1050 |
| TaaI | ACNGT | 4 cut(s) | 11, 730, 937, 980 |
| TaqI | TCGA | 3 cut(s) | 48, 339, 811 |
| TasI | AATT | 7 cut(s) | 18, 206, 397, 573, 954, 1200, 1209 |
| TatI | WGTACW | 1 cut(s) | 1042 |
| TauI | GCSGC | 5 cut(s) | 111, 143, 618, 621, 762 |
| TfiI | GAWTC | 3 cut(s) | 33, 261, 454 |
| TscAI | CASTG | 1 cut(s) | 634 |
| TseFI | GTSAC | 1 cut(s) | 11 |
| TseI | GCWGC | 5 cut(s) | 686, 734, 737, 756, 860 |
| Tsp45I | GTSAC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 1 cut(s) | 810 |
| TspGWI | ACGGA | 1 cut(s) | 382 |
| TspRI | CASTG | 1 cut(s) | 634 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 611 |
| VneI | GTGCAC | 1 cut(s) | 1002 |
| VpaK11BI | GGWCC | 3 cut(s) | 405, 529, 766 |
| XapI | RAATTY | 1 cut(s) | 1200 |
| XceI | RCATGY | 2 cut(s) | 301, 842 |
| XmnI | GAANNNNTTC | 1 cut(s) | 915 |
| XspI | CTAG | 3 cut(s) | 308, 507, 864 |