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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 176 |
| AccI | GTMKAC | 1 cut(s) | 571 |
| AccII | CGCG | 1 cut(s) | 333 |
| AciI | CCGC | 5 cut(s) | 30, 174, 308, 387, 547 |
| AclWI | GGATC | 5 cut(s) | 27, 40, 284, 297, 448 |
| AcsI | RAATTY | 3 cut(s) | 100, 115, 159 |
| AcvI | CACGTG | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 218 |
| AgsI | TTSAA | 1 cut(s) | 468 |
| AluBI | AGCT | 1 cut(s) | 472 |
| AluI | AGCT | 1 cut(s) | 472 |
| AlwI | GGATC | 5 cut(s) | 27, 40, 284, 297, 448 |
| AoxI | GGCC | 2 cut(s) | 151, 199 |
| ApaI | GGGCCC | 1 cut(s) | 155 |
| ApeKI | GCWGC | 1 cut(s) | 515 |
| ApoI | RAATTY | 3 cut(s) | 100, 115, 159 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| AspS9I | GGNCC | 2 cut(s) | 151, 152 |
| AsuC2I | CCSGG | 2 cut(s) | 66, 97 |
| AsuHPI | GGTGA | 2 cut(s) | 54, 163 |
| AsuII | TTCGAA | 1 cut(s) | 524 |
| BaeGI | GKGCMC | 2 cut(s) | 155, 483 |
| BamHI | GGATCC | 2 cut(s) | 32, 289 |
| BanII | GRGCYC | 1 cut(s) | 155 |
| BbrPI | CACGTG | 1 cut(s) | 484 |
| BbvI | GCAGC | 1 cut(s) | 502 |
| BccI | CCATC | 3 cut(s) | 154, 470, 599 |
| BceAI | ACGGC | 2 cut(s) | 43, 233 |
| BclI | TGATCA | 1 cut(s) | 612 |
| BcnI | CCSGG | 2 cut(s) | 66, 97 |
| BfaI | CTAG | 2 cut(s) | 398, 585 |
| BisI | GCNGC | 2 cut(s) | 387, 516 |
| BlsI | GCNGC | 2 cut(s) | 388, 517 |
| Bme1390I | CCNGG | 2 cut(s) | 66, 97 |
| BmgT120I | GGNCC | 2 cut(s) | 151, 152 |
| BmiI | GGNNCC | 6 cut(s) | 34, 153, 154, 291, 351, 376 |
| BmrFI | CCNGG | 2 cut(s) | 66, 97 |
| BmsI | GCATC | 2 cut(s) | 31, 440 |
| Bpu14I | TTCGAA | 1 cut(s) | 524 |
| BpuMI | CCSGG | 2 cut(s) | 66, 97 |
| BsaAI | YACGTR | 1 cut(s) | 484 |
| BsaJI | CCNNGG | 1 cut(s) | 202 |
| BsaWI | WCCGGW | 2 cut(s) | 355, 437 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 218 |
| Bse118I | RCCGGY | 1 cut(s) | 377 |
| BseDI | CCNNGG | 1 cut(s) | 202 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseSI | GKGCMC | 2 cut(s) | 155, 483 |
| BseXI | GCAGC | 1 cut(s) | 502 |
| Bsh1236I | CGCG | 1 cut(s) | 333 |
| Bsh1285I | CGRYCG | 1 cut(s) | 438 |
| BshFI | GGCC | 2 cut(s) | 153, 201 |
| BsiEI | CGRYCG | 1 cut(s) | 438 |
| BsiSI | CCGG | 5 cut(s) | 66, 97, 356, 378, 438 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BsmI | GAATGC | 1 cut(s) | 91 |
| BsnI | GGCC | 2 cut(s) | 153, 201 |
| Bsp119I | TTCGAA | 1 cut(s) | 524 |
| Bsp120I | GGGCCC | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 2 cut(s) | 155, 483 |
| Bsp143I | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| Bsp68I | TCGCGA | 1 cut(s) | 333 |
| BspACI | CCGC | 5 cut(s) | 30, 174, 308, 387, 547 |
| BspANI | GGCC | 2 cut(s) | 153, 201 |
| BspFNI | CGCG | 1 cut(s) | 333 |
| BspLI | GGNNCC | 6 cut(s) | 34, 153, 154, 291, 351, 376 |
| BspPI | GGATC | 5 cut(s) | 27, 40, 284, 297, 448 |
| BspT104I | TTCGAA | 1 cut(s) | 524 |
| BsrBI | CCGCTC | 1 cut(s) | 176 |
| BsrFI | RCCGGY | 1 cut(s) | 377 |
| BssAI | RCCGGY | 1 cut(s) | 377 |
| BssECI | CCNNGG | 1 cut(s) | 202 |
| BssMI | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| BssT1I | CCWWGG | 1 cut(s) | 202 |
| Bst4CI | ACNGT | 2 cut(s) | 421, 569 |
| Bst6I | CTCTTC | 2 cut(s) | 329, 586 |
| BstBAI | YACGTR | 1 cut(s) | 484 |
| BstBI | TTCGAA | 1 cut(s) | 524 |
| BstEII | GGTNACC | 1 cut(s) | 169 |
| BstFNI | CGCG | 1 cut(s) | 333 |
| BstKTI | GATC | 5 cut(s) | 35, 292, 403, 443, 615 |
| BstMBI | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| BstMCI | CGRYCG | 1 cut(s) | 438 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 478 |
| BstPI | GGTNACC | 1 cut(s) | 169 |
| BstSCI | CCNGG | 2 cut(s) | 64, 95 |
| BstSLI | GKGCMC | 2 cut(s) | 155, 483 |
| BstUI | CGCG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 1 cut(s) | 502 |
| BstX2I | RGATCY | 2 cut(s) | 32, 289 |
| BstYI | RGATCY | 2 cut(s) | 32, 289 |
| BsuRI | GGCC | 2 cut(s) | 153, 201 |
| BtgZI | GCGATG | 2 cut(s) | 348, 618 |
| BtuMI | TCGCGA | 1 cut(s) | 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 377 |
| Cfr13I | GGNCC | 2 cut(s) | 151, 152 |
| CseI | GACGC | 1 cut(s) | 455 |
| DpnI | GATC | 5 cut(s) | 34, 291, 402, 442, 614 |
| DpnII | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| Eam1104I | CTCTTC | 2 cut(s) | 329, 586 |
| EarI | CTCTTC | 2 cut(s) | 329, 586 |
| EciI | GGCGGA | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 1 cut(s) | 202 |
| Eco24I | GRGCYC | 1 cut(s) | 155 |
| Eco72I | CACGTG | 1 cut(s) | 484 |
| Eco91I | GGTNACC | 1 cut(s) | 169 |
| EcoO109I | RGGNCCY | 1 cut(s) | 152 |
| EcoO65I | GGTNACC | 1 cut(s) | 169 |
| EcoRI | GAATTC | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 202 |
| EcoT38I | GRGCYC | 1 cut(s) | 155 |
| ErhI | CCWWGG | 1 cut(s) | 202 |
| FaiI | YATR | 6 cut(s) | 8, 77, 79, 81, 229, 243 |
| FauI | CCCGC | 1 cut(s) | 540 |
| FbaI | TGATCA | 1 cut(s) | 612 |
| FblI | GTMKAC | 1 cut(s) | 571 |
| Fnu4HI | GCNGC | 2 cut(s) | 387, 516 |
| FriOI | GRGCYC | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 2 cut(s) | 387, 516 |
| FspBI | CTAG | 2 cut(s) | 398, 585 |
| GluI | GCNGC | 2 cut(s) | 387, 516 |
| HaeIII | GGCC | 2 cut(s) | 153, 201 |
| HapII | CCGG | 5 cut(s) | 66, 97, 356, 378, 438 |
| HgaI | GACGC | 1 cut(s) | 455 |
| HindIII | AAGCTT | 1 cut(s) | 470 |
| HinfI | GANTC | 2 cut(s) | 362, 541 |
| HpaII | CCGG | 5 cut(s) | 66, 97, 356, 378, 438 |
| HphI | GGTGA | 2 cut(s) | 54, 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 572 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 445 |
| Hpy188III | TCNNGA | 2 cut(s) | 332, 585 |
| Hpy8I | GTNNAC | 1 cut(s) | 572 |
| Hpy99I | CGWCG | 1 cut(s) | 333 |
| HpyAV | CCTTC | 1 cut(s) | 294 |
| HpyCH4III | ACNGT | 2 cut(s) | 421, 569 |
| HpyCH4IV | ACGT | 1 cut(s) | 483 |
| HpyCH4V | TGCA | 4 cut(s) | 113, 128, 224, 256 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 478 |
| HpySE526I | ACGT | 1 cut(s) | 483 |
| Ksp22I | TGATCA | 1 cut(s) | 612 |
| Kzo9I | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| LmnI | GCTCC | 1 cut(s) | 239 |
| LpnPI | CCDG | 6 cut(s) | 79, 110, 225, 369, 391, 451 |
| Lsp1109I | GCAGC | 1 cut(s) | 502 |
| LweI | GCATC | 2 cut(s) | 31, 440 |
| MaeI | CTAG | 2 cut(s) | 398, 585 |
| MaeII | ACGT | 1 cut(s) | 483 |
| MaeIII | GTNAC | 3 cut(s) | 49, 70, 169 |
| MalI | GATC | 5 cut(s) | 34, 291, 402, 442, 614 |
| MbiI | CCGCTC | 1 cut(s) | 176 |
| MboI | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| MboII | GAAGA | 3 cut(s) | 125, 316, 573 |
| MflI | RGATCY | 2 cut(s) | 32, 289 |
| MhlI | GDGCHC | 2 cut(s) | 155, 483 |
| MluCI | AATT | 4 cut(s) | 100, 115, 159, 598 |
| MmeI | TCCRAC | 3 cut(s) | 161, 485, 588 |
| MnlI | CCTC | 7 cut(s) | 11, 76, 330, 363, 544, 571, 581 |
| MseI | TTAA | 2 cut(s) | 410, 456 |
| MspI | CCGG | 5 cut(s) | 66, 97, 356, 378, 438 |
| MspR9I | CCNGG | 2 cut(s) | 66, 97 |
| Mva1269I | GAATGC | 1 cut(s) | 91 |
| MvnI | CGCG | 1 cut(s) | 333 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 478 |
| NciI | CCSGG | 2 cut(s) | 66, 97 |
| NdeII | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| NlaIV | GGNNCC | 6 cut(s) | 34, 153, 154, 291, 351, 376 |
| NmuCI | GTSAC | 3 cut(s) | 49, 70, 169 |
| NruI | TCGCGA | 1 cut(s) | 333 |
| NspV | TTCGAA | 1 cut(s) | 524 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 449, 600 |
| PctI | GAATGC | 1 cut(s) | 91 |
| PfeI | GAWTC | 2 cut(s) | 362, 541 |
| PfoI | TCCNGGA | 1 cut(s) | 95 |
| PkrI | GCNGC | 2 cut(s) | 388, 517 |
| PmaCI | CACGTG | 1 cut(s) | 484 |
| PmlI | CACGTG | 1 cut(s) | 484 |
| Ppu21I | YACGTR | 1 cut(s) | 484 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| PspCI | CACGTG | 1 cut(s) | 484 |
| PspEI | GGTNACC | 1 cut(s) | 169 |
| PspN4I | GGNNCC | 6 cut(s) | 34, 153, 154, 291, 351, 376 |
| PspOMI | GGGCCC | 1 cut(s) | 151 |
| PspPI | GGNCC | 2 cut(s) | 151, 152 |
| PsuI | RGATCY | 2 cut(s) | 32, 289 |
| RruI | TCGCGA | 1 cut(s) | 333 |
| SaqAI | TTAA | 2 cut(s) | 410, 456 |
| SatI | GCNGC | 2 cut(s) | 387, 516 |
| Sau3AI | GATC | 5 cut(s) | 32, 289, 400, 440, 612 |
| Sau96I | GGNCC | 2 cut(s) | 151, 152 |
| ScrFI | CCNGG | 2 cut(s) | 66, 97 |
| SduI | GDGCHC | 2 cut(s) | 155, 483 |
| SetI | ASST | 6 cut(s) | 87, 214, 355, 474, 486, 592 |
| SfaNI | GCATC | 2 cut(s) | 31, 440 |
| SfuI | TTCGAA | 1 cut(s) | 524 |
| Sse9I | AATT | 4 cut(s) | 100, 115, 159, 598 |
| SsiI | CCGC | 5 cut(s) | 30, 174, 308, 387, 547 |
| SspMI | CTAG | 2 cut(s) | 398, 585 |
| StyD4I | CCNGG | 2 cut(s) | 64, 95 |
| StyI | CCWWGG | 1 cut(s) | 202 |
| TaaI | ACNGT | 2 cut(s) | 421, 569 |
| TaiI | ACGT | 1 cut(s) | 486 |
| TaqI | TCGA | 3 cut(s) | 16, 434, 524 |
| TaqII | GACCGA | 1 cut(s) | 157 |
| TasI | AATT | 4 cut(s) | 100, 115, 159, 598 |
| TauI | GCSGC | 1 cut(s) | 389 |
| TfiI | GAWTC | 2 cut(s) | 362, 541 |
| Tru1I | TTAA | 2 cut(s) | 410, 456 |
| Tru9I | TTAA | 2 cut(s) | 410, 456 |
| TseFI | GTSAC | 3 cut(s) | 49, 70, 169 |
| TseI | GCWGC | 1 cut(s) | 515 |
| Tsp45I | GTSAC | 3 cut(s) | 49, 70, 169 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XapI | RAATTY | 3 cut(s) | 100, 115, 159 |
| XbaI | TCTAGA | 1 cut(s) | 584 |
| XmiI | GTMKAC | 1 cut(s) | 571 |
| XspI | CTAG | 2 cut(s) | 398, 585 |