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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 282, 647 |
| AciI | CCGC | 7 cut(s) | 103, 214, 229, 280, 380, 572, 596 |
| AclWI | GGATC | 2 cut(s) | 388, 433 |
| AcoI | YGGCCR | 3 cut(s) | 264, 341, 615 |
| AfaI | GTAC | 1 cut(s) | 627 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 295, 442, 535, 613 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgeI | ACCGGT | 1 cut(s) | 10 |
| AgsI | TTSAA | 1 cut(s) | 479 |
| AluBI | AGCT | 4 cut(s) | 124, 177, 465, 522 |
| AluI | AGCT | 4 cut(s) | 124, 177, 465, 522 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AlwI | GGATC | 2 cut(s) | 388, 433 |
| Ama87I | CYCGRG | 2 cut(s) | 291, 470 |
| AoxI | GGCC | 6 cut(s) | 264, 331, 341, 432, 597, 615 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 110, 142 |
| AsiGI | ACCGGT | 1 cut(s) | 10 |
| AspLEI | GCGC | 2 cut(s) | 550, 647 |
| AspS9I | GGNCC | 5 cut(s) | 57, 309, 332, 433, 598 |
| AsuC2I | CCSGG | 2 cut(s) | 263, 443 |
| AsuHPI | GGTGA | 1 cut(s) | 329 |
| AvaI | CYCGRG | 2 cut(s) | 291, 470 |
| AvaII | GGWCC | 2 cut(s) | 57, 309 |
| BanII | GRGCYC | 5 cut(s) | 126, 252, 263, 288, 372 |
| BauI | CACGAG | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BccI | CCATC | 1 cut(s) | 47 |
| BceAI | ACGGC | 3 cut(s) | 32, 602, 609 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 163, 197, 427, 461 |
| BcnI | CCSGG | 2 cut(s) | 263, 443 |
| BfaI | CTAG | 1 cut(s) | 324 |
| BfoI | RGCGCY | 1 cut(s) | 551 |
| BisI | GCNGC | 2 cut(s) | 573, 597 |
| BlsI | GCNGC | 2 cut(s) | 574, 598 |
| Bme1390I | CCNGG | 2 cut(s) | 263, 443 |
| Bme18I | GGWCC | 2 cut(s) | 57, 309 |
| BmeT110I | CYCGRG | 2 cut(s) | 291, 470 |
| BmgT120I | GGNCC | 5 cut(s) | 57, 309, 332, 433, 598 |
| BmiI | GGNNCC | 4 cut(s) | 58, 107, 435, 516 |
| BmrFI | CCNGG | 2 cut(s) | 263, 443 |
| BmsI | GCATC | 4 cut(s) | 34, 144, 490, 632 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 298, 561 |
| BpuMI | CCSGG | 2 cut(s) | 263, 443 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 471 |
| BsaWI | WCCGGW | 1 cut(s) | 10 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 345, 375 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 28, 54, 295, 442, 535, 613 |
| Bse118I | RCCGGY | 6 cut(s) | 10, 240, 266, 339, 343, 408 |
| BseDI | CCNNGG | 2 cut(s) | 48, 471 |
| BseGI | GGATG | 2 cut(s) | 58, 505 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 295, 442, 535, 613 |
| BseRI | GAGGAG | 2 cut(s) | 209, 224 |
| BseX3I | CGGCCG | 3 cut(s) | 264, 341, 615 |
| BsgI | GTGCAG | 1 cut(s) | 467 |
| Bsh1236I | CGCG | 2 cut(s) | 282, 647 |
| Bsh1285I | CGRYCG | 3 cut(s) | 267, 344, 618 |
| BshFI | GGCC | 6 cut(s) | 266, 333, 343, 434, 599, 617 |
| BshTI | ACCGGT | 1 cut(s) | 10 |
| BsiEI | CGRYCG | 3 cut(s) | 267, 344, 618 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiHKCI | CYCGRG | 2 cut(s) | 291, 470 |
| BsiSI | CCGG | 9 cut(s) | 11, 241, 263, 267, 340, 344, 409, 443, 614 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 295, 442, 535, 613 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 6 cut(s) | 266, 333, 343, 434, 599, 617 |
| BsoBI | CYCGRG | 2 cut(s) | 291, 470 |
| Bsp1286I | GDGCHC | 5 cut(s) | 126, 252, 263, 288, 372 |
| Bsp143I | GATC | 3 cut(s) | 393, 438, 450 |
| BspACI | CCGC | 7 cut(s) | 103, 214, 229, 280, 380, 572, 596 |
| BspANI | GGCC | 6 cut(s) | 266, 333, 343, 434, 599, 617 |
| BspFNI | CGCG | 2 cut(s) | 282, 647 |
| BspLI | GGNNCC | 4 cut(s) | 58, 107, 435, 516 |
| BspPI | GGATC | 2 cut(s) | 388, 433 |
| BspQI | GCTCTTC | 1 cut(s) | 131 |
| BsrFI | RCCGGY | 6 cut(s) | 10, 240, 266, 339, 343, 408 |
| BssAI | RCCGGY | 6 cut(s) | 10, 240, 266, 339, 343, 408 |
| BssECI | CCNNGG | 2 cut(s) | 48, 471 |
| BssMI | GATC | 3 cut(s) | 393, 438, 450 |
| BssSI | CACGAG | 1 cut(s) | 365 |
| Bst2BI | CACGAG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 114 |
| Bst6I | CTCTTC | 2 cut(s) | 131, 474 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 133, 186, 284, 345, 410, 419, 467 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 58, 505 |
| BstFNI | CGCG | 2 cut(s) | 282, 647 |
| BstH2I | RGCGCY | 1 cut(s) | 551 |
| BstHHI | GCGC | 2 cut(s) | 550, 647 |
| BstKTI | GATC | 3 cut(s) | 396, 441, 453 |
| BstMBI | GATC | 3 cut(s) | 393, 438, 450 |
| BstMCI | CGRYCG | 3 cut(s) | 267, 344, 618 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 367, 414, 418, 545 |
| BstNSI | RCATGY | 1 cut(s) | 587 |
| BstSCI | CCNGG | 2 cut(s) | 261, 441 |
| BstUI | CGCG | 2 cut(s) | 282, 647 |
| BstZI | CGGCCG | 3 cut(s) | 264, 341, 615 |
| BsuRI | GGCC | 6 cut(s) | 266, 333, 343, 434, 599, 617 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 58, 505 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 133, 186, 284, 345, 410, 419, 467 |
| CfoI | GCGC | 2 cut(s) | 550, 647 |
| Cfr10I | RCCGGY | 6 cut(s) | 10, 240, 266, 339, 343, 408 |
| Cfr13I | GGNCC | 5 cut(s) | 57, 309, 332, 433, 598 |
| Csp6I | GTAC | 1 cut(s) | 626 |
| CspAI | ACCGGT | 1 cut(s) | 10 |
| CviAII | CATG | 1 cut(s) | 584 |
| CviQI | GTAC | 1 cut(s) | 626 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DpnI | GATC | 3 cut(s) | 395, 440, 452 |
| DpnII | GATC | 3 cut(s) | 393, 438, 450 |
| EaeI | YGGCCR | 3 cut(s) | 264, 341, 615 |
| EagI | CGGCCG | 3 cut(s) | 264, 341, 615 |
| Eam1104I | CTCTTC | 2 cut(s) | 131, 474 |
| EarI | CTCTTC | 2 cut(s) | 131, 474 |
| EciI | GGCGGA | 1 cut(s) | 203 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| EclXI | CGGCCG | 3 cut(s) | 264, 341, 615 |
| Eco24I | GRGCYC | 5 cut(s) | 126, 252, 263, 288, 372 |
| Eco47I | GGWCC | 2 cut(s) | 57, 309 |
| Eco52I | CGGCCG | 3 cut(s) | 264, 341, 615 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| Eco88I | CYCGRG | 2 cut(s) | 291, 470 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoO109I | RGGNCCY | 2 cut(s) | 309, 332 |
| EcoT38I | GRGCYC | 5 cut(s) | 126, 252, 263, 288, 372 |
| FaeI | CATG | 1 cut(s) | 587 |
| FaiI | YATR | 9 cut(s) | 41, 72, 117, 161, 306, 357, 455, 510, 585 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 1 cut(s) | 583 |
| FauI | CCCGC | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 2 cut(s) | 573, 597 |
| FokI | GGATG | 2 cut(s) | 65, 512 |
| FriOI | GRGCYC | 5 cut(s) | 126, 252, 263, 288, 372 |
| Fsp4HI | GCNGC | 2 cut(s) | 573, 597 |
| FspBI | CTAG | 1 cut(s) | 324 |
| GlaI | GCGC | 2 cut(s) | 549, 646 |
| GluI | GCNGC | 2 cut(s) | 573, 597 |
| HaeII | RGCGCY | 1 cut(s) | 551 |
| HaeIII | GGCC | 6 cut(s) | 266, 333, 343, 434, 599, 617 |
| HapII | CCGG | 9 cut(s) | 11, 241, 263, 267, 340, 344, 409, 443, 614 |
| HhaI | GCGC | 2 cut(s) | 550, 647 |
| Hin1II | CATG | 1 cut(s) | 587 |
| Hin6I | GCGC | 2 cut(s) | 548, 645 |
| HinP1I | GCGC | 2 cut(s) | 548, 645 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 2 cut(s) | 385, 554 |
| HpaII | CCGG | 9 cut(s) | 11, 241, 263, 267, 340, 344, 409, 443, 614 |
| HphI | GGTGA | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 390, 499 |
| Hpy188III | TCNNGA | 5 cut(s) | 223, 293, 563, 578, 654 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| Hpy99I | CGWCG | 3 cut(s) | 259, 569, 595 |
| HpyAV | CCTTC | 5 cut(s) | 59, 323, 343, 504, 611 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 114 |
| HpyCH4IV | ACGT | 1 cut(s) | 567 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 427, 448 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 367, 414, 418, 545 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 567 |
| Hsp92II | CATG | 1 cut(s) | 587 |
| HspAI | GCGC | 2 cut(s) | 548, 645 |
| KroI | GCCGGC | 2 cut(s) | 343, 408 |
| KroNI | GCCGGC | 2 cut(s) | 345, 410 |
| Kzo9I | GATC | 3 cut(s) | 393, 438, 450 |
| LguI | GCTCTTC | 1 cut(s) | 131 |
| LmnI | GCTCC | 3 cut(s) | 366, 508, 527 |
| LpnPI | CCDG | 9 cut(s) | 24, 254, 276, 280, 353, 357, 422, 456, 627 |
| LweI | GCATC | 4 cut(s) | 34, 144, 490, 632 |
| MaeI | CTAG | 1 cut(s) | 324 |
| MaeII | ACGT | 1 cut(s) | 567 |
| MalI | GATC | 3 cut(s) | 395, 440, 452 |
| MboI | GATC | 3 cut(s) | 393, 438, 450 |
| MboII | GAAGA | 4 cut(s) | 74, 118, 208, 491 |
| MfeI | CAATTG | 2 cut(s) | 98, 428 |
| MhlI | GDGCHC | 5 cut(s) | 126, 252, 263, 288, 372 |
| MluCI | AATT | 2 cut(s) | 98, 428 |
| MlyI | GAGTC | 2 cut(s) | 394, 548 |
| MroNI | GCCGGC | 2 cut(s) | 343, 408 |
| MspI | CCGG | 9 cut(s) | 11, 241, 263, 267, 340, 344, 409, 443, 614 |
| MspR9I | CCNGG | 2 cut(s) | 263, 443 |
| MunI | CAATTG | 2 cut(s) | 98, 428 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvnI | CGCG | 2 cut(s) | 282, 647 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 367, 414, 418, 545 |
| NaeI | GCCGGC | 2 cut(s) | 345, 410 |
| NciI | CCSGG | 2 cut(s) | 263, 443 |
| NdeII | GATC | 3 cut(s) | 393, 438, 450 |
| NgoMIV | GCCGGC | 2 cut(s) | 343, 408 |
| NlaIII | CATG | 1 cut(s) | 587 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 107, 435, 516 |
| NmeAIII | GCCGAG | 1 cut(s) | 408 |
| NspI | RCATGY | 1 cut(s) | 587 |
| PaeR7I | CTCGAG | 1 cut(s) | 291 |
| PciI | ACATGT | 1 cut(s) | 583 |
| PciSI | GCTCTTC | 1 cut(s) | 131 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 298 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PdiI | GCCGGC | 2 cut(s) | 345, 410 |
| PinAI | ACCGGT | 1 cut(s) | 10 |
| PkrI | GCNGC | 2 cut(s) | 574, 598 |
| PleI | GAGTC | 2 cut(s) | 393, 548 |
| PpsI | GAGTC | 2 cut(s) | 393, 548 |
| PpuMI | RGGWCCY | 1 cut(s) | 309 |
| PscI | ACATGT | 1 cut(s) | 583 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| Psp5II | RGGWCCY | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 107, 435, 516 |
| PspPI | GGNCC | 5 cut(s) | 57, 309, 332, 433, 598 |
| PspPPI | RGGWCCY | 1 cut(s) | 309 |
| RsaI | GTAC | 1 cut(s) | 627 |
| RsaNI | GTAC | 1 cut(s) | 626 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SapI | GCTCTTC | 1 cut(s) | 131 |
| SatI | GCNGC | 2 cut(s) | 573, 597 |
| Sau3AI | GATC | 3 cut(s) | 393, 438, 450 |
| Sau96I | GGNCC | 5 cut(s) | 57, 309, 332, 433, 598 |
| SchI | GAGTC | 2 cut(s) | 394, 548 |
| ScrFI | CCNGG | 2 cut(s) | 263, 443 |
| SduI | GDGCHC | 5 cut(s) | 126, 252, 263, 288, 372 |
| SfaNI | GCATC | 4 cut(s) | 34, 144, 490, 632 |
| Sfr274I | CTCGAG | 1 cut(s) | 291 |
| SinI | GGWCC | 2 cut(s) | 57, 309 |
| SlaI | CTCGAG | 1 cut(s) | 291 |
| SmlI | CTYRAG | 3 cut(s) | 291, 313, 576 |
| SmoI | CTYRAG | 3 cut(s) | 291, 313, 576 |
| Sse9I | AATT | 2 cut(s) | 98, 428 |
| SsiI | CCGC | 7 cut(s) | 103, 214, 229, 280, 380, 572, 596 |
| SspMI | CTAG | 1 cut(s) | 324 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyD4I | CCNGG | 2 cut(s) | 261, 441 |
| TaaI | ACNGT | 2 cut(s) | 81, 114 |
| TaiI | ACGT | 1 cut(s) | 570 |
| TaqI | TCGA | 3 cut(s) | 173, 254, 292 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 2 cut(s) | 98, 428 |
| TauI | GCSGC | 2 cut(s) | 575, 599 |
| VpaK11BI | GGWCC | 2 cut(s) | 57, 309 |
| XceI | RCATGY | 1 cut(s) | 587 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 532 |
| XhoI | CTCGAG | 1 cut(s) | 291 |
| XspI | CTAG | 1 cut(s) | 324 |