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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 335, 388 |
| AccII | CGCG | 3 cut(s) | 134, 245, 282 |
| AciI | CCGC | 9 cut(s) | 203, 234, 251, 330, 380, 395, 440, 541, 651 |
| AclWI | GGATC | 2 cut(s) | 526, 551 |
| AcoI | YGGCCR | 1 cut(s) | 401 |
| AfeI | AGCGCT | 1 cut(s) | 472 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 267, 385, 436, 535 |
| AgsI | TTSAA | 2 cut(s) | 571, 657 |
| AluBI | AGCT | 3 cut(s) | 127, 179, 558 |
| AluI | AGCT | 3 cut(s) | 127, 179, 558 |
| Alw21I | GWGCWC | 2 cut(s) | 129, 345 |
| AlwI | GGATC | 2 cut(s) | 526, 551 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| Aor51HI | AGCGCT | 1 cut(s) | 472 |
| AoxI | GGCC | 2 cut(s) | 401, 526 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 80, 112, 113, 145 |
| AspLEI | GCGC | 3 cut(s) | 245, 473, 616 |
| AspS9I | GGNCC | 2 cut(s) | 57, 527 |
| AsuC2I | CCSGG | 2 cut(s) | 262, 536 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 57 |
| BanI | GGYRCC | 2 cut(s) | 335, 388 |
| BanII | GRGCYC | 3 cut(s) | 129, 251, 288 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| Bbv12I | GWGCWC | 2 cut(s) | 129, 345 |
| BccI | CCATC | 1 cut(s) | 47 |
| BceAI | ACGGC | 2 cut(s) | 32, 388 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 165, 199, 520, 554 |
| BcnI | CCSGG | 2 cut(s) | 262, 536 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfoI | RGCGCY | 2 cut(s) | 474, 617 |
| BisI | GCNGC | 2 cut(s) | 203, 441 |
| BlsI | GCNGC | 2 cut(s) | 204, 442 |
| Bme1390I | CCNGG | 2 cut(s) | 262, 536 |
| Bme18I | GGWCC | 1 cut(s) | 57 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 2 cut(s) | 57, 527 |
| BmiI | GGNNCC | 4 cut(s) | 58, 110, 337, 390 |
| BmrFI | CCNGG | 2 cut(s) | 262, 536 |
| BmsI | GCATC | 4 cut(s) | 34, 189, 638, 638 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuMI | CCSGG | 2 cut(s) | 262, 536 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 261, 398, 432 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 347, 376, 377, 406, 441, 471 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 28, 54, 267, 385, 436, 535 |
| Bse118I | RCCGGY | 1 cut(s) | 239 |
| Bse1I | ACTGG | 1 cut(s) | 15 |
| BseDI | CCNNGG | 4 cut(s) | 48, 261, 398, 432 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 267, 385, 436, 535 |
| BseNI | ACTGG | 1 cut(s) | 15 |
| BseRI | GAGGAG | 2 cut(s) | 349, 352 |
| Bsh1236I | CGCG | 3 cut(s) | 134, 245, 282 |
| BshFI | GGCC | 2 cut(s) | 403, 528 |
| BshNI | GGYRCC | 2 cut(s) | 335, 388 |
| BsiHKAI | GWGCWC | 2 cut(s) | 129, 345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 3 cut(s) | 240, 261, 536 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 28, 54, 267, 385, 436, 535 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| BsmI | GAATGC | 1 cut(s) | 584 |
| BsnI | GGCC | 2 cut(s) | 403, 528 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 251, 288, 345 |
| Bsp143I | GATC | 3 cut(s) | 487, 531, 543 |
| Bsp68I | TCGCGA | 2 cut(s) | 134, 282 |
| BspACI | CCGC | 9 cut(s) | 203, 234, 251, 330, 380, 395, 440, 541, 651 |
| BspANI | GGCC | 2 cut(s) | 403, 528 |
| BspFNI | CGCG | 3 cut(s) | 134, 245, 282 |
| BspLI | GGNNCC | 4 cut(s) | 58, 110, 337, 390 |
| BspPI | GGATC | 2 cut(s) | 526, 551 |
| BspQI | GCTCTTC | 1 cut(s) | 134 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 388 |
| BsrFI | RCCGGY | 1 cut(s) | 239 |
| BsrI | ACTGG | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 239 |
| BssECI | CCNNGG | 4 cut(s) | 48, 261, 398, 432 |
| BssMI | GATC | 3 cut(s) | 487, 531, 543 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 2 cut(s) | 117, 388 |
| Bst6I | CTCTTC | 3 cut(s) | 134, 566, 591 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 388, 507 |
| BstC8I | GCNNGC | 9 cut(s) | 6, 188, 247, 251, 284, 308, 503, 512, 560 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstFNI | CGCG | 3 cut(s) | 134, 245, 282 |
| BstH2I | RGCGCY | 2 cut(s) | 474, 617 |
| BstHHI | GCGC | 3 cut(s) | 245, 473, 616 |
| BstKTI | GATC | 3 cut(s) | 490, 534, 546 |
| BstMBI | GATC | 3 cut(s) | 487, 531, 543 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 242, 303, 388, 446, 463, 507, 511 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 2 cut(s) | 260, 534 |
| BstUI | CGCG | 3 cut(s) | 134, 245, 282 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| BsuRI | GGCC | 2 cut(s) | 403, 528 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| BtsIMutI | CAGTG | 1 cut(s) | 8 |
| BtuMI | TCGCGA | 2 cut(s) | 134, 282 |
| Cac8I | GCNNGC | 9 cut(s) | 6, 188, 247, 251, 284, 308, 503, 512, 560 |
| CfoI | GCGC | 3 cut(s) | 245, 473, 616 |
| Cfr10I | RCCGGY | 1 cut(s) | 239 |
| Cfr13I | GGNCC | 2 cut(s) | 57, 527 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 606, 641 |
| CviAII | CATG | 2 cut(s) | 461, 518 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DpnI | GATC | 3 cut(s) | 489, 533, 545 |
| DpnII | GATC | 3 cut(s) | 487, 531, 543 |
| EaeI | YGGCCR | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 3 cut(s) | 134, 566, 591 |
| EarI | CTCTTC | 3 cut(s) | 134, 566, 591 |
| EciI | GGCGGA | 1 cut(s) | 384 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 3 cut(s) | 129, 251, 288 |
| Eco47I | GGWCC | 1 cut(s) | 57 |
| Eco47III | AGCGCT | 1 cut(s) | 472 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT38I | GRGCYC | 3 cut(s) | 129, 251, 288 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 2 cut(s) | 464, 521 |
| FaiI | YATR | 8 cut(s) | 72, 120, 164, 453, 462, 519, 548, 602 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 2 cut(s) | 460, 517 |
| FauI | CCCGC | 2 cut(s) | 258, 387 |
| Fnu4HI | GCNGC | 2 cut(s) | 203, 441 |
| FokI | GGATG | 1 cut(s) | 65 |
| FriOI | GRGCYC | 3 cut(s) | 129, 251, 288 |
| Fsp4HI | GCNGC | 2 cut(s) | 203, 441 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GlaI | GCGC | 3 cut(s) | 244, 472, 615 |
| GluI | GCNGC | 2 cut(s) | 203, 441 |
| HaeII | RGCGCY | 2 cut(s) | 474, 617 |
| HaeIII | GGCC | 2 cut(s) | 403, 528 |
| HapII | CCGG | 3 cut(s) | 240, 261, 536 |
| HhaI | GCGC | 3 cut(s) | 245, 473, 616 |
| Hin1II | CATG | 2 cut(s) | 464, 521 |
| Hin6I | GCGC | 3 cut(s) | 243, 471, 614 |
| HinP1I | GCGC | 3 cut(s) | 243, 471, 614 |
| HincII | GTYRAC | 2 cut(s) | 16, 670 |
| HindII | GTYRAC | 2 cut(s) | 16, 670 |
| HinfI | GANTC | 4 cut(s) | 230, 356, 480, 660 |
| HpaII | CCGG | 3 cut(s) | 240, 261, 536 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 93, 670 |
| Hpy188I | TCNGA | 4 cut(s) | 195, 367, 591, 644 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 222, 281, 657, 684 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 93, 670 |
| Hpy99I | CGWCG | 1 cut(s) | 648 |
| HpyAV | CCTTC | 2 cut(s) | 59, 439 |
| HpyCH4III | ACNGT | 2 cut(s) | 117, 388 |
| HpyCH4IV | ACGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 510, 521 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 242, 303, 388, 446, 463, 507, 511 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 95 |
| Hsp92II | CATG | 2 cut(s) | 464, 521 |
| HspAI | GCGC | 3 cut(s) | 243, 471, 614 |
| Kzo9I | GATC | 3 cut(s) | 487, 531, 543 |
| LguI | GCTCTTC | 1 cut(s) | 134 |
| LmnI | GCTCC | 1 cut(s) | 462 |
| LpnPI | CCDG | 6 cut(s) | 253, 253, 274, 316, 549, 633 |
| LweI | GCATC | 4 cut(s) | 34, 189, 638, 638 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MaeII | ACGT | 1 cut(s) | 95 |
| MalI | GATC | 3 cut(s) | 489, 533, 545 |
| MboI | GATC | 3 cut(s) | 487, 531, 543 |
| MboII | GAAGA | 7 cut(s) | 74, 121, 208, 365, 482, 578, 583 |
| MfeI | CAATTG | 1 cut(s) | 522 |
| MhlI | GDGCHC | 4 cut(s) | 129, 251, 288, 345 |
| MluCI | AATT | 2 cut(s) | 99, 522 |
| MlyI | GAGTC | 3 cut(s) | 224, 350, 489 |
| MmeI | TCCRAC | 1 cut(s) | 667 |
| MspI | CCGG | 3 cut(s) | 240, 261, 536 |
| MspR9I | CCNGG | 2 cut(s) | 262, 536 |
| MunI | CAATTG | 1 cut(s) | 522 |
| Mva1269I | GAATGC | 1 cut(s) | 584 |
| MvnI | CGCG | 3 cut(s) | 134, 245, 282 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 242, 303, 388, 446, 463, 507, 511 |
| NciI | CCSGG | 2 cut(s) | 262, 536 |
| NdeII | GATC | 3 cut(s) | 487, 531, 543 |
| NlaIII | CATG | 2 cut(s) | 464, 521 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 110, 337, 390 |
| NmeAIII | GCCGAG | 3 cut(s) | 364, 454, 492 |
| NruI | TCGCGA | 2 cut(s) | 134, 282 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PaeR7I | CTCGAG | 1 cut(s) | 290 |
| PciSI | GCTCTTC | 1 cut(s) | 134 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 440 |
| PctI | GAATGC | 1 cut(s) | 584 |
| PfeI | GAWTC | 1 cut(s) | 660 |
| PkrI | GCNGC | 2 cut(s) | 204, 442 |
| PleI | GAGTC | 3 cut(s) | 224, 350, 488 |
| PpsI | GAGTC | 3 cut(s) | 224, 350, 488 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 110, 337, 390 |
| PspPI | GGNCC | 2 cut(s) | 57, 527 |
| PspXI | VCTCGAGB | 1 cut(s) | 290 |
| RruI | TCGCGA | 2 cut(s) | 134, 282 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SapI | GCTCTTC | 1 cut(s) | 134 |
| SatI | GCNGC | 2 cut(s) | 203, 441 |
| Sau3AI | GATC | 3 cut(s) | 487, 531, 543 |
| Sau96I | GGNCC | 2 cut(s) | 57, 527 |
| SchI | GAGTC | 3 cut(s) | 224, 350, 489 |
| ScrFI | CCNGG | 2 cut(s) | 262, 536 |
| SduI | GDGCHC | 4 cut(s) | 129, 251, 288, 345 |
| SetI | ASST | 8 cut(s) | 21, 98, 129, 181, 213, 499, 560, 622 |
| SfaNI | GCATC | 4 cut(s) | 34, 189, 638, 638 |
| Sfr274I | CTCGAG | 1 cut(s) | 290 |
| SinI | GGWCC | 1 cut(s) | 57 |
| SlaI | CTCGAG | 1 cut(s) | 290 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| Sse9I | AATT | 2 cut(s) | 99, 522 |
| SsiI | CCGC | 9 cut(s) | 203, 234, 251, 330, 380, 395, 440, 541, 651 |
| SspMI | CTAG | 1 cut(s) | 420 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| StyD4I | CCNGG | 2 cut(s) | 260, 534 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 2 cut(s) | 117, 388 |
| TaiI | ACGT | 1 cut(s) | 98 |
| TaqI | TCGA | 5 cut(s) | 175, 291, 351, 410, 483 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 2 cut(s) | 99, 522 |
| TauI | GCSGC | 2 cut(s) | 205, 443 |
| TfiI | GAWTC | 1 cut(s) | 660 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TspGWI | ACGGA | 2 cut(s) | 242, 653 |
| TspRI | CASTG | 1 cut(s) | 15 |
| VpaK11BI | GGWCC | 1 cut(s) | 57 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XhoI | CTCGAG | 1 cut(s) | 290 |
| XspI | CTAG | 1 cut(s) | 420 |