Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 787 |
| Acc36I | ACCTGC | 1 cut(s) | 278 |
| AccB1I | GGYRCC | 1 cut(s) | 176 |
| AccBSI | CCGCTC | 2 cut(s) | 342, 349 |
| AccII | CGCG | 3 cut(s) | 249, 256, 906 |
| AclWI | GGATC | 3 cut(s) | 273, 814, 827 |
| AcoI | YGGCCR | 3 cut(s) | 209, 700, 873 |
| AcuI | CTGAAG | 1 cut(s) | 382 |
| AfaI | GTAC | 3 cut(s) | 228, 729, 917 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 173, 201, 332, 461, 731 |
| AgeI | ACCGGT | 1 cut(s) | 724 |
| AgsI | TTSAA | 2 cut(s) | 101, 614 |
| AjnI | CCWGG | 1 cut(s) | 239 |
| Alw26I | GTCTC | 3 cut(s) | 227, 245, 773 |
| AlwI | GGATC | 3 cut(s) | 273, 814, 827 |
| AoxI | GGCC | 7 cut(s) | 157, 209, 448, 516, 687, 700, 873 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 56, 353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 386, 418 |
| AsiGI | ACCGGT | 1 cut(s) | 724 |
| AspLEI | GCGC | 2 cut(s) | 166, 536 |
| AspS9I | GGNCC | 5 cut(s) | 157, 158, 517, 672, 688 |
| AsuC2I | CCSGG | 1 cut(s) | 578 |
| AvaII | GGWCC | 1 cut(s) | 672 |
| BaeGI | GKGCMC | 2 cut(s) | 161, 181 |
| BalI | TGGCCA | 1 cut(s) | 211 |
| BamHI | GGATCC | 1 cut(s) | 819 |
| BanI | GGYRCC | 1 cut(s) | 176 |
| BanII | GRGCYC | 3 cut(s) | 161, 717, 739 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvI | GCAGC | 2 cut(s) | 43, 340 |
| BccI | CCATC | 6 cut(s) | 195, 220, 327, 449, 455, 888 |
| BceAI | ACGGC | 1 cut(s) | 702 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 900, 934 |
| BciT130I | CCWGG | 1 cut(s) | 241 |
| BcnI | CCSGG | 1 cut(s) | 578 |
| BcoDI | GTCTC | 3 cut(s) | 227, 245, 773 |
| BfaI | CTAG | 1 cut(s) | 731 |
| BfoI | RGCGCY | 2 cut(s) | 167, 537 |
| BfuAI | ACCTGC | 1 cut(s) | 278 |
| BisI | GCNGC | 7 cut(s) | 57, 167, 347, 354, 703, 762, 904 |
| BlsI | GCNGC | 7 cut(s) | 58, 168, 348, 355, 704, 763, 905 |
| BmcAI | AGTACT | 1 cut(s) | 917 |
| Bme1390I | CCNGG | 2 cut(s) | 241, 578 |
| Bme18I | GGWCC | 1 cut(s) | 672 |
| BmgT120I | GGNCC | 5 cut(s) | 157, 158, 517, 672, 688 |
| BmiI | GGNNCC | 6 cut(s) | 6, 159, 178, 547, 736, 821 |
| BmrFI | CCNGG | 2 cut(s) | 241, 578 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 4 cut(s) | 81, 426, 756, 778 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 406, 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 679 |
| BpuMI | CCSGG | 1 cut(s) | 578 |
| BsaI | GGTCTC | 1 cut(s) | 773 |
| BsaJI | CCNNGG | 1 cut(s) | 513 |
| BsaWI | WCCGGW | 3 cut(s) | 149, 229, 724 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 530, 560 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 173, 201, 332, 461, 731 |
| Bse118I | RCCGGY | 3 cut(s) | 593, 724, 871 |
| Bse1I | ACTGG | 3 cut(s) | 159, 451, 667 |
| Bse3DI | GCAATG | 1 cut(s) | 712 |
| BseBI | CCWGG | 1 cut(s) | 241 |
| BseDI | CCNNGG | 1 cut(s) | 513 |
| BseGI | GGATG | 3 cut(s) | 212, 769, 855 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 173, 201, 332, 461, 731 |
| BseMI | GCAATG | 1 cut(s) | 712 |
| BseNI | ACTGG | 3 cut(s) | 159, 451, 667 |
| BseSI | GKGCMC | 2 cut(s) | 161, 181 |
| BseX3I | CGGCCG | 1 cut(s) | 873 |
| BseXI | GCAGC | 2 cut(s) | 43, 340 |
| BseYI | CCCAGC | 2 cut(s) | 160, 519 |
| BsgI | GTGCAG | 1 cut(s) | 625 |
| Bsh1236I | CGCG | 3 cut(s) | 249, 256, 906 |
| Bsh1285I | CGRYCG | 2 cut(s) | 529, 876 |
| BshFI | GGCC | 7 cut(s) | 159, 211, 450, 518, 689, 702, 875 |
| BshNI | GGYRCC | 1 cut(s) | 176 |
| BshTI | ACCGGT | 1 cut(s) | 724 |
| BsiEI | CGRYCG | 2 cut(s) | 529, 876 |
| BsiSI | CCGG | 6 cut(s) | 150, 230, 577, 594, 725, 872 |
| BslFI | GGGAC | 1 cut(s) | 907 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 173, 201, 332, 461, 731 |
| BsmAI | GTCTC | 3 cut(s) | 227, 245, 773 |
| BsmBI | CGTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 907 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 7 cut(s) | 159, 211, 450, 518, 689, 702, 875 |
| Bso31I | GGTCTC | 1 cut(s) | 773 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 4 cut(s) | 161, 181, 717, 739 |
| Bsp143I | GATC | 3 cut(s) | 265, 819, 877 |
| Bsp19I | CCATGG | 1 cut(s) | 513 |
| Bsp68I | TCGCGA | 1 cut(s) | 249 |
| BspANI | GGCC | 7 cut(s) | 159, 211, 450, 518, 689, 702, 875 |
| BspFNI | CGCG | 3 cut(s) | 249, 256, 906 |
| BspLI | GGNNCC | 6 cut(s) | 6, 159, 178, 547, 736, 821 |
| BspMI | ACCTGC | 1 cut(s) | 278 |
| BspPI | GGATC | 3 cut(s) | 273, 814, 827 |
| BspT107I | GGYRCC | 1 cut(s) | 176 |
| BspTNI | GGTCTC | 1 cut(s) | 773 |
| BsrBI | CCGCTC | 2 cut(s) | 342, 349 |
| BsrDI | GCAATG | 1 cut(s) | 712 |
| BsrFI | RCCGGY | 3 cut(s) | 593, 724, 871 |
| BsrI | ACTGG | 3 cut(s) | 159, 451, 667 |
| BssAI | RCCGGY | 3 cut(s) | 593, 724, 871 |
| BssECI | CCNNGG | 1 cut(s) | 513 |
| BssMI | GATC | 3 cut(s) | 265, 819, 877 |
| BssT1I | CCWWGG | 1 cut(s) | 513 |
| Bst2UI | CCWGG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 2 cut(s) | 527, 542 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 652 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 792 |
| BstC8I | GCNNGC | 5 cut(s) | 274, 344, 351, 452, 749 |
| BstDEI | CTNAG | 2 cut(s) | 679, 886 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstF5I | GGATG | 3 cut(s) | 212, 769, 855 |
| BstFNI | CGCG | 3 cut(s) | 249, 256, 906 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 537 |
| BstHHI | GCGC | 2 cut(s) | 166, 536 |
| BstKTI | GATC | 3 cut(s) | 268, 822, 880 |
| BstMAI | GTCTC | 3 cut(s) | 227, 245, 773 |
| BstMBI | GATC | 3 cut(s) | 265, 819, 877 |
| BstMCI | CGRYCG | 2 cut(s) | 529, 876 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 792 |
| BstNI | CCWGG | 1 cut(s) | 241 |
| BstNSI | RCATGY | 2 cut(s) | 751, 790 |
| BstSCI | CCNGG | 2 cut(s) | 239, 576 |
| BstSLI | GKGCMC | 2 cut(s) | 161, 181 |
| BstUI | CGCG | 3 cut(s) | 249, 256, 906 |
| BstV1I | GCAGC | 2 cut(s) | 43, 340 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 2 cut(s) | 265, 819 |
| BstYI | RGATCY | 2 cut(s) | 265, 819 |
| BstZI | CGGCCG | 1 cut(s) | 873 |
| BsuRI | GGCC | 7 cut(s) | 159, 211, 450, 518, 689, 702, 875 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtgZI | GCGATG | 1 cut(s) | 779 |
| BtsCI | GGATG | 3 cut(s) | 212, 769, 855 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 444, 547, 660 |
| BtuMI | TCGCGA | 1 cut(s) | 249 |
| BveI | ACCTGC | 1 cut(s) | 278 |
| Cac8I | GCNNGC | 5 cut(s) | 274, 344, 351, 452, 749 |
| CfoI | GCGC | 2 cut(s) | 166, 536 |
| Cfr10I | RCCGGY | 3 cut(s) | 593, 724, 871 |
| Cfr13I | GGNCC | 5 cut(s) | 157, 158, 517, 672, 688 |
| CseI | GACGC | 1 cut(s) | 262 |
| Csp6I | GTAC | 3 cut(s) | 227, 728, 916 |
| CspAI | ACCGGT | 1 cut(s) | 724 |
| CviAII | CATG | 4 cut(s) | 479, 514, 748, 787 |
| CviQI | GTAC | 3 cut(s) | 227, 728, 916 |
| DdeI | CTNAG | 2 cut(s) | 679, 886 |
| DpnI | GATC | 3 cut(s) | 267, 821, 879 |
| DpnII | GATC | 3 cut(s) | 265, 819, 877 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 787 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 787 |
| EaeI | YGGCCR | 3 cut(s) | 209, 700, 873 |
| EagI | CGGCCG | 1 cut(s) | 873 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 652 |
| EarI | CTCTTC | 2 cut(s) | 33, 652 |
| EclXI | CGGCCG | 1 cut(s) | 873 |
| Eco130I | CCWWGG | 1 cut(s) | 513 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 717, 739 |
| Eco31I | GGTCTC | 1 cut(s) | 773 |
| Eco32I | GATATC | 1 cut(s) | 433 |
| Eco47I | GGWCC | 1 cut(s) | 672 |
| Eco52I | CGGCCG | 1 cut(s) | 873 |
| Eco57I | CTGAAG | 1 cut(s) | 382 |
| EcoRII | CCWGG | 1 cut(s) | 239 |
| EcoRV | GATATC | 1 cut(s) | 433 |
| EcoT14I | CCWWGG | 1 cut(s) | 513 |
| EcoT22I | ATGCAT | 1 cut(s) | 771 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 717, 739 |
| ErhI | CCWWGG | 1 cut(s) | 513 |
| Esp3I | CGTCTC | 1 cut(s) | 245 |
| FaeI | CATG | 4 cut(s) | 482, 517, 751, 790 |
| FaiI | YATR | 9 cut(s) | 300, 474, 480, 515, 559, 635, 749, 754, 788 |
| FaqI | GGGAC | 1 cut(s) | 907 |
| FatI | CATG | 4 cut(s) | 478, 513, 747, 786 |
| FauI | CCCGC | 4 cut(s) | 249, 255, 561, 867 |
| Fnu4HI | GCNGC | 7 cut(s) | 57, 167, 347, 354, 703, 762, 904 |
| FokI | GGATG | 3 cut(s) | 199, 756, 842 |
| FriOI | GRGCYC | 3 cut(s) | 161, 717, 739 |
| Fsp4HI | GCNGC | 7 cut(s) | 57, 167, 347, 354, 703, 762, 904 |
| FspBI | CTAG | 1 cut(s) | 731 |
| GlaI | GCGC | 2 cut(s) | 165, 535 |
| GluI | GCNGC | 7 cut(s) | 57, 167, 347, 354, 703, 762, 904 |
| GsaI | CCCAGC | 2 cut(s) | 164, 523 |
| HaeII | RGCGCY | 2 cut(s) | 167, 537 |
| HaeIII | GGCC | 7 cut(s) | 159, 211, 450, 518, 689, 702, 875 |
| HapII | CCGG | 6 cut(s) | 150, 230, 577, 594, 725, 872 |
| HgaI | GACGC | 1 cut(s) | 262 |
| HhaI | GCGC | 2 cut(s) | 166, 536 |
| Hin1II | CATG | 4 cut(s) | 482, 517, 751, 790 |
| Hin6I | GCGC | 2 cut(s) | 164, 534 |
| HinP1I | GCGC | 2 cut(s) | 164, 534 |
| HincII | GTYRAC | 1 cut(s) | 499 |
| HindII | GTYRAC | 1 cut(s) | 499 |
| HinfI | GANTC | 1 cut(s) | 491 |
| HpaII | CCGG | 6 cut(s) | 150, 230, 577, 594, 725, 872 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 499 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 401, 719 |
| Hpy188III | TCNNGA | 7 cut(s) | 248, 370, 611, 778, 802, 817, 823 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 499 |
| Hpy99I | CGWCG | 1 cut(s) | 688 |
| HpyAV | CCTTC | 2 cut(s) | 137, 808 |
| HpyCH4III | ACNGT | 2 cut(s) | 527, 542 |
| HpyCH4V | TGCA | 4 cut(s) | 478, 590, 642, 769 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 792 |
| HpyF3I | CTNAG | 2 cut(s) | 679, 886 |
| Hsp92II | CATG | 4 cut(s) | 482, 517, 751, 790 |
| HspAI | GCGC | 2 cut(s) | 164, 534 |
| Kzo9I | GATC | 3 cut(s) | 265, 819, 877 |
| LmnI | GCTCC | 4 cut(s) | 10, 129, 551, 734 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 340 |
| LweI | GCATC | 4 cut(s) | 81, 426, 756, 778 |
| MaeI | CTAG | 1 cut(s) | 731 |
| MalI | GATC | 3 cut(s) | 267, 821, 879 |
| MbiI | CCGCTC | 2 cut(s) | 342, 349 |
| MboI | GATC | 3 cut(s) | 265, 819, 877 |
| MboII | GAAGA | 6 cut(s) | 25, 50, 89, 314, 639, 832 |
| MflI | RGATCY | 2 cut(s) | 265, 819 |
| MhlI | GDGCHC | 4 cut(s) | 161, 181, 717, 739 |
| MlsI | TGGCCA | 1 cut(s) | 211 |
| MluCI | AATT | 3 cut(s) | 205, 485, 600 |
| MluNI | TGGCCA | 1 cut(s) | 211 |
| MmeI | TCCRAC | 2 cut(s) | 162, 408 |
| Mox20I | TGGCCA | 1 cut(s) | 211 |
| Mph1103I | ATGCAT | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 211 |
| MseI | TTAA | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 211 |
| MspI | CCGG | 6 cut(s) | 150, 230, 577, 594, 725, 872 |
| MspR9I | CCNGG | 2 cut(s) | 241, 578 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 241 |
| MvnI | CGCG | 3 cut(s) | 249, 256, 906 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 792 |
| NciI | CCSGG | 1 cut(s) | 578 |
| NcoI | CCATGG | 1 cut(s) | 513 |
| NdeII | GATC | 3 cut(s) | 265, 819, 877 |
| NlaIII | CATG | 4 cut(s) | 482, 517, 751, 790 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 159, 178, 547, 736, 821 |
| NruI | TCGCGA | 1 cut(s) | 249 |
| NsiI | ATGCAT | 1 cut(s) | 771 |
| NspI | RCATGY | 2 cut(s) | 751, 790 |
| PaeI | GCATGC | 1 cut(s) | 751 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 491 |
| PinAI | ACCGGT | 1 cut(s) | 724 |
| PkrI | GCNGC | 7 cut(s) | 58, 168, 348, 355, 704, 763, 905 |
| Psp6I | CCWGG | 1 cut(s) | 239 |
| PspFI | CCCAGC | 2 cut(s) | 160, 519 |
| PspGI | CCWGG | 1 cut(s) | 239 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 159, 178, 547, 736, 821 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 5 cut(s) | 157, 158, 517, 672, 688 |
| PsuI | RGATCY | 2 cut(s) | 265, 819 |
| RruI | TCGCGA | 1 cut(s) | 249 |
| RsaI | GTAC | 3 cut(s) | 228, 729, 917 |
| RsaNI | GTAC | 3 cut(s) | 227, 728, 916 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 7 cut(s) | 57, 167, 347, 354, 703, 762, 904 |
| Sau3AI | GATC | 3 cut(s) | 265, 819, 877 |
| Sau96I | GGNCC | 5 cut(s) | 157, 158, 517, 672, 688 |
| ScaI | AGTACT | 1 cut(s) | 917 |
| ScrFI | CCNGG | 2 cut(s) | 241, 578 |
| SduI | GDGCHC | 4 cut(s) | 161, 181, 717, 739 |
| SetI | ASST | 8 cut(s) | 107, 292, 312, 472, 509, 647, 677, 892 |
| SfaNI | GCATC | 4 cut(s) | 81, 426, 756, 778 |
| SinI | GGWCC | 1 cut(s) | 672 |
| SphI | GCATGC | 1 cut(s) | 751 |
| Sse9I | AATT | 3 cut(s) | 205, 485, 600 |
| SspI | AATATT | 1 cut(s) | 617 |
| SspMI | CTAG | 1 cut(s) | 731 |
| StyD4I | CCNGG | 2 cut(s) | 239, 576 |
| StyI | CCWWGG | 1 cut(s) | 513 |
| TaaI | ACNGT | 2 cut(s) | 527, 542 |
| TaqI | TCGA | 5 cut(s) | 27, 115, 509, 777, 892 |
| TasI | AATT | 3 cut(s) | 205, 485, 600 |
| TatI | WGTACW | 1 cut(s) | 915 |
| TauI | GCSGC | 5 cut(s) | 169, 349, 705, 764, 906 |
| TfiI | GAWTC | 1 cut(s) | 491 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 4 cut(s) | 88, 451, 547, 667 |
| TseI | GCWGC | 2 cut(s) | 56, 353 |
| TspDTI | ATGAA | 2 cut(s) | 101, 622 |
| TspRI | CASTG | 4 cut(s) | 88, 451, 547, 667 |
| VpaK11BI | GGWCC | 1 cut(s) | 672 |
| XceI | RCATGY | 2 cut(s) | 751, 790 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 326 |
| XspI | CTAG | 1 cut(s) | 731 |
| ZrmI | AGTACT | 1 cut(s) | 917 |
| Zsp2I | ATGCAT | 1 cut(s) | 771 |