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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 581, 605 |
| AccII | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| AccIII | TCCGGA | 1 cut(s) | 366 |
| AclWI | GGATC | 2 cut(s) | 547, 560 |
| AcoI | YGGCCR | 1 cut(s) | 451 |
| AfaI | GTAC | 1 cut(s) | 781 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 53, 225, 366, 443, 640, 653 |
| AgeI | ACCGGT | 1 cut(s) | 287 |
| AgsI | TTSAA | 1 cut(s) | 260 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 616 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 138, 170 |
| AluBI | AGCT | 3 cut(s) | 177, 383, 795 |
| AluI | AGCT | 3 cut(s) | 177, 383, 795 |
| Alw26I | GTCTC | 2 cut(s) | 100, 472 |
| AlwI | GGATC | 2 cut(s) | 547, 560 |
| Aor13HI | TCCGGA | 1 cut(s) | 366 |
| AoxI | GGCC | 3 cut(s) | 396, 451, 600 |
| ApeKI | GCWGC | 4 cut(s) | 202, 229, 630, 795 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 79, 110, 111, 142 |
| AsiGI | ACCGGT | 1 cut(s) | 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 301 |
| AspLEI | GCGC | 3 cut(s) | 218, 523, 699 |
| AspS9I | GGNCC | 4 cut(s) | 56, 447, 600, 644 |
| AsuC2I | CCSGG | 3 cut(s) | 642, 672, 724 |
| AsuHPI | GGTGA | 2 cut(s) | 287, 836 |
| AsuNHI | GCTAGC | 2 cut(s) | 4, 379 |
| AvaII | GGWCC | 3 cut(s) | 56, 447, 644 |
| BamHI | GGATCC | 1 cut(s) | 552 |
| BanII | GRGCYC | 1 cut(s) | 245 |
| BbsI | GAAGAC | 2 cut(s) | 203, 715 |
| BbvI | GCAGC | 4 cut(s) | 189, 216, 642, 782 |
| BccI | CCATC | 5 cut(s) | 46, 476, 721, 727, 746 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 184, 218 |
| BcnI | CCSGG | 3 cut(s) | 642, 672, 724 |
| BcoDI | GTCTC | 2 cut(s) | 100, 472 |
| BfaI | CTAG | 2 cut(s) | 5, 380 |
| BfoI | RGCGCY | 1 cut(s) | 524 |
| BisI | GCNGC | 7 cut(s) | 203, 230, 454, 519, 603, 631, 796 |
| BlsI | GCNGC | 7 cut(s) | 204, 231, 455, 520, 604, 632, 797 |
| Bme1390I | CCNGG | 3 cut(s) | 642, 672, 724 |
| Bme18I | GGWCC | 3 cut(s) | 56, 447, 644 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 616 |
| BmgT120I | GGNCC | 4 cut(s) | 56, 447, 600, 644 |
| BmiI | GGNNCC | 8 cut(s) | 57, 315, 327, 448, 539, 554, 601, 645 |
| BmrFI | CCNGG | 3 cut(s) | 642, 672, 724 |
| BmsI | GCATC | 2 cut(s) | 33, 144 |
| BmtI | GCTAGC | 2 cut(s) | 8, 383 |
| BpiI | GAAGAC | 2 cut(s) | 203, 715 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 683, 715 |
| Bpu10I | CCTNAGC | 1 cut(s) | 32 |
| BpuEI | CTTGAG | 2 cut(s) | 341, 413 |
| BpuMI | CCSGG | 3 cut(s) | 642, 672, 724 |
| Bsa29I | ATCGAT | 1 cut(s) | 41 |
| BsaI | GGTCTC | 1 cut(s) | 472 |
| BsaJI | CCNNGG | 3 cut(s) | 47, 59, 670 |
| BsaWI | WCCGGW | 3 cut(s) | 287, 366, 492 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 259, 289 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 53, 225, 366, 443, 640, 653 |
| Bse118I | RCCGGY | 1 cut(s) | 287 |
| Bse1I | ACTGG | 1 cut(s) | 743 |
| BseAI | TCCGGA | 1 cut(s) | 366 |
| BseCI | ATCGAT | 1 cut(s) | 41 |
| BseDI | CCNNGG | 3 cut(s) | 47, 59, 670 |
| BseGI | GGATG | 5 cut(s) | 57, 719, 735, 790, 823 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 53, 225, 366, 443, 640, 653 |
| BseNI | ACTGG | 1 cut(s) | 743 |
| BseRI | GAGGAG | 3 cut(s) | 280, 551, 826 |
| BseX3I | CGGCCG | 1 cut(s) | 451 |
| BseXI | GCAGC | 4 cut(s) | 189, 216, 642, 782 |
| BsgI | GTGCAG | 1 cut(s) | 188 |
| Bsh1236I | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| Bsh1285I | CGRYCG | 1 cut(s) | 454 |
| BshFI | GGCC | 3 cut(s) | 398, 453, 602 |
| BshTI | ACCGGT | 1 cut(s) | 287 |
| BshVI | ATCGAT | 1 cut(s) | 41 |
| BsiEI | CGRYCG | 1 cut(s) | 454 |
| BsiSI | CCGG | 7 cut(s) | 288, 367, 450, 493, 641, 672, 724 |
| BslFI | GGGAC | 1 cut(s) | 69 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 53, 225, 366, 443, 640, 653 |
| BsmAI | GTCTC | 2 cut(s) | 100, 472 |
| BsmFI | GGGAC | 1 cut(s) | 69 |
| BsnI | GGCC | 3 cut(s) | 398, 453, 602 |
| Bso31I | GGTCTC | 1 cut(s) | 472 |
| Bsp1286I | GDGCHC | 1 cut(s) | 245 |
| Bsp13I | TCCGGA | 1 cut(s) | 366 |
| Bsp143I | GATC | 2 cut(s) | 15, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 47 |
| Bsp68I | TCGCGA | 2 cut(s) | 131, 609 |
| BspANI | GGCC | 3 cut(s) | 398, 453, 602 |
| BspDI | ATCGAT | 1 cut(s) | 41 |
| BspEI | TCCGGA | 1 cut(s) | 366 |
| BspFNI | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| BspHI | TCATGA | 1 cut(s) | 478 |
| BspLI | GGNNCC | 8 cut(s) | 57, 315, 327, 448, 539, 554, 601, 645 |
| BspOI | GCTAGC | 2 cut(s) | 8, 383 |
| BspPI | GGATC | 2 cut(s) | 547, 560 |
| BspQI | GCTCTTC | 1 cut(s) | 830 |
| BspTNI | GGTCTC | 1 cut(s) | 472 |
| BsrBI | CCGCTC | 2 cut(s) | 581, 605 |
| BsrFI | RCCGGY | 1 cut(s) | 287 |
| BsrI | ACTGG | 1 cut(s) | 743 |
| BssAI | RCCGGY | 1 cut(s) | 287 |
| BssECI | CCNNGG | 3 cut(s) | 47, 59, 670 |
| BssMI | GATC | 2 cut(s) | 15, 552 |
| BssT1I | CCWWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 114 |
| Bst6I | CTCTTC | 4 cut(s) | 131, 775, 822, 830 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 83, 133, 186, 381, 607 |
| BstDEI | CTNAG | 1 cut(s) | 32 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 5 cut(s) | 57, 719, 735, 790, 823 |
| BstFNI | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| BstH2I | RGCGCY | 1 cut(s) | 524 |
| BstHHI | GCGC | 3 cut(s) | 218, 523, 699 |
| BstKTI | GATC | 2 cut(s) | 18, 555 |
| BstMAI | GTCTC | 2 cut(s) | 100, 472 |
| BstMBI | GATC | 2 cut(s) | 15, 552 |
| BstMCI | CGRYCG | 1 cut(s) | 454 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 260, 395, 602 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstSCI | CCNGG | 3 cut(s) | 640, 670, 722 |
| BstUI | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| BstV1I | GCAGC | 4 cut(s) | 189, 216, 642, 782 |
| BstV2I | GAAGAC | 2 cut(s) | 203, 715 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BstZI | CGGCCG | 1 cut(s) | 451 |
| Bsu15I | ATCGAT | 1 cut(s) | 41 |
| BsuRI | GGCC | 3 cut(s) | 398, 453, 602 |
| BsuTUI | ATCGAT | 1 cut(s) | 41 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 5 cut(s) | 57, 719, 735, 790, 823 |
| BtuMI | TCGCGA | 2 cut(s) | 131, 609 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 83, 133, 186, 381, 607 |
| CciI | TCATGA | 1 cut(s) | 478 |
| CfoI | GCGC | 3 cut(s) | 218, 523, 699 |
| Cfr10I | RCCGGY | 1 cut(s) | 287 |
| Cfr13I | GGNCC | 4 cut(s) | 56, 447, 600, 644 |
| ClaI | ATCGAT | 1 cut(s) | 41 |
| CseI | GACGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 780 |
| CspAI | ACCGGT | 1 cut(s) | 287 |
| CviAII | CATG | 4 cut(s) | 48, 251, 457, 479 |
| CviQI | GTAC | 1 cut(s) | 780 |
| DdeI | CTNAG | 1 cut(s) | 32 |
| DpnI | GATC | 2 cut(s) | 17, 554 |
| DpnII | GATC | 2 cut(s) | 15, 552 |
| DriI | GACNNNNNGTC | 1 cut(s) | 616 |
| EaeI | YGGCCR | 1 cut(s) | 451 |
| EagI | CGGCCG | 1 cut(s) | 451 |
| Eam1104I | CTCTTC | 4 cut(s) | 131, 775, 822, 830 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 616 |
| EarI | CTCTTC | 4 cut(s) | 131, 775, 822, 830 |
| EclXI | CGGCCG | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 1 cut(s) | 47 |
| Eco147I | AGGCCT | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 245 |
| Eco31I | GGTCTC | 1 cut(s) | 472 |
| Eco32I | GATATC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 3 cut(s) | 56, 447, 644 |
| Eco52I | CGGCCG | 1 cut(s) | 451 |
| EcoRV | GATATC | 1 cut(s) | 154 |
| EcoT14I | CCWWGG | 1 cut(s) | 47 |
| EcoT38I | GRGCYC | 1 cut(s) | 245 |
| ErhI | CCWWGG | 1 cut(s) | 47 |
| FaeI | CATG | 4 cut(s) | 51, 254, 460, 482 |
| FaiI | YATR | 9 cut(s) | 49, 71, 117, 252, 357, 403, 434, 458, 480 |
| FaqI | GGGAC | 1 cut(s) | 69 |
| FatI | CATG | 4 cut(s) | 47, 250, 456, 478 |
| FauI | CCCGC | 4 cut(s) | 74, 414, 574, 589 |
| Fnu4HI | GCNGC | 7 cut(s) | 203, 230, 454, 519, 603, 631, 796 |
| FokI | GGATG | 5 cut(s) | 64, 706, 742, 797, 830 |
| FriOI | GRGCYC | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 7 cut(s) | 203, 230, 454, 519, 603, 631, 796 |
| FspBI | CTAG | 2 cut(s) | 5, 380 |
| GlaI | GCGC | 3 cut(s) | 217, 522, 698 |
| GluI | GCNGC | 7 cut(s) | 203, 230, 454, 519, 603, 631, 796 |
| HaeII | RGCGCY | 1 cut(s) | 524 |
| HaeIII | GGCC | 3 cut(s) | 398, 453, 602 |
| HapII | CCGG | 7 cut(s) | 288, 367, 450, 493, 641, 672, 724 |
| HgaI | GACGC | 1 cut(s) | 208 |
| HhaI | GCGC | 3 cut(s) | 218, 523, 699 |
| Hin1II | CATG | 4 cut(s) | 51, 254, 460, 482 |
| Hin6I | GCGC | 3 cut(s) | 216, 521, 697 |
| HinP1I | GCGC | 3 cut(s) | 216, 521, 697 |
| HinfI | GANTC | 3 cut(s) | 544, 692, 800 |
| HpaII | CCGG | 7 cut(s) | 288, 367, 450, 493, 641, 672, 724 |
| HphI | GGTGA | 2 cut(s) | 287, 836 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 3 cut(s) | 648, 656, 805 |
| Hpy188III | TCNNGA | 9 cut(s) | 22, 130, 193, 257, 320, 367, 471, 479, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| Hpy99I | CGWCG | 2 cut(s) | 285, 845 |
| HpyAV | CCTTC | 8 cut(s) | 58, 264, 373, 585, 631, 736, 774, 784 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 114 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 1 cut(s) | 205 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 260, 395, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 32 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92II | CATG | 4 cut(s) | 51, 254, 460, 482 |
| HspAI | GCGC | 3 cut(s) | 216, 521, 697 |
| Kpn2I | TCCGGA | 1 cut(s) | 366 |
| Kzo9I | GATC | 2 cut(s) | 15, 552 |
| LguI | GCTCTTC | 1 cut(s) | 830 |
| LmnI | GCTCC | 4 cut(s) | 313, 331, 528, 578 |
| Lsp1109I | GCAGC | 4 cut(s) | 189, 216, 642, 782 |
| LweI | GCATC | 2 cut(s) | 33, 144 |
| MaeI | CTAG | 2 cut(s) | 5, 380 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MalI | GATC | 2 cut(s) | 17, 554 |
| MbiI | CCGCTC | 2 cut(s) | 581, 605 |
| MboI | GATC | 2 cut(s) | 15, 552 |
| MboII | GAAGA | 9 cut(s) | 10, 118, 208, 521, 720, 762, 839, 844, 847 |
| MfeI | CAATTG | 1 cut(s) | 98 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MhlI | GDGCHC | 1 cut(s) | 245 |
| MluCI | AATT | 1 cut(s) | 98 |
| MlyI | GAGTC | 2 cut(s) | 701, 794 |
| MmeI | TCCRAC | 2 cut(s) | 274, 671 |
| MroI | TCCGGA | 1 cut(s) | 366 |
| MroXI | GAANNNNTTC | 1 cut(s) | 301 |
| MseI | TTAA | 1 cut(s) | 408 |
| MspI | CCGG | 7 cut(s) | 288, 367, 450, 493, 641, 672, 724 |
| MspR9I | CCNGG | 3 cut(s) | 642, 672, 724 |
| MunI | CAATTG | 1 cut(s) | 98 |
| MvnI | CGCG | 5 cut(s) | 131, 216, 574, 609, 697 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 260, 395, 602 |
| NciI | CCSGG | 3 cut(s) | 642, 672, 724 |
| NcoI | CCATGG | 1 cut(s) | 47 |
| NdeII | GATC | 2 cut(s) | 15, 552 |
| NheI | GCTAGC | 2 cut(s) | 4, 379 |
| NlaIII | CATG | 4 cut(s) | 51, 254, 460, 482 |
| NlaIV | GGNNCC | 8 cut(s) | 57, 315, 327, 448, 539, 554, 601, 645 |
| NmeAIII | GCCGAG | 1 cut(s) | 244 |
| NruI | TCGCGA | 2 cut(s) | 131, 609 |
| NspI | RCATGY | 1 cut(s) | 460 |
| PagI | TCATGA | 1 cut(s) | 478 |
| PceI | AGGCCT | 1 cut(s) | 398 |
| PciSI | GCTCTTC | 1 cut(s) | 830 |
| PdmI | GAANNNNTTC | 1 cut(s) | 301 |
| PfeI | GAWTC | 1 cut(s) | 544 |
| PfoI | TCCNGGA | 1 cut(s) | 722 |
| PinAI | ACCGGT | 1 cut(s) | 287 |
| PkrI | GCNGC | 7 cut(s) | 204, 231, 455, 520, 604, 632, 797 |
| PleI | GAGTC | 2 cut(s) | 700, 794 |
| PpsI | GAGTC | 2 cut(s) | 700, 794 |
| PspN4I | GGNNCC | 8 cut(s) | 57, 315, 327, 448, 539, 554, 601, 645 |
| PspPI | GGNCC | 4 cut(s) | 56, 447, 600, 644 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| RruI | TCGCGA | 2 cut(s) | 131, 609 |
| RsaI | GTAC | 1 cut(s) | 781 |
| RsaNI | GTAC | 1 cut(s) | 780 |
| SapI | GCTCTTC | 1 cut(s) | 830 |
| SaqAI | TTAA | 1 cut(s) | 408 |
| SatI | GCNGC | 7 cut(s) | 203, 230, 454, 519, 603, 631, 796 |
| Sau3AI | GATC | 2 cut(s) | 15, 552 |
| Sau96I | GGNCC | 4 cut(s) | 56, 447, 600, 644 |
| SchI | GAGTC | 2 cut(s) | 701, 794 |
| ScrFI | CCNGG | 3 cut(s) | 642, 672, 724 |
| SduI | GDGCHC | 1 cut(s) | 245 |
| SetI | ASST | 8 cut(s) | 179, 283, 385, 430, 615, 640, 679, 797 |
| SfaNI | GCATC | 2 cut(s) | 33, 144 |
| SinI | GGWCC | 3 cut(s) | 56, 447, 644 |
| SmlI | CTYRAG | 2 cut(s) | 320, 392 |
| SmoI | CTYRAG | 2 cut(s) | 320, 392 |
| Sse9I | AATT | 1 cut(s) | 98 |
| SseBI | AGGCCT | 1 cut(s) | 398 |
| SspMI | CTAG | 2 cut(s) | 5, 380 |
| StuI | AGGCCT | 1 cut(s) | 398 |
| StyD4I | CCNGG | 3 cut(s) | 640, 670, 722 |
| StyI | CCWWGG | 1 cut(s) | 47 |
| TaaI | ACNGT | 2 cut(s) | 12, 114 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TaqI | TCGA | 4 cut(s) | 41, 283, 547, 564 |
| TaqII | GACCGA | 1 cut(s) | 73 |
| TasI | AATT | 1 cut(s) | 98 |
| TauI | GCSGC | 3 cut(s) | 456, 521, 605 |
| TfiI | GAWTC | 1 cut(s) | 544 |
| Tru1I | TTAA | 1 cut(s) | 408 |
| Tru9I | TTAA | 1 cut(s) | 408 |
| TseI | GCWGC | 4 cut(s) | 202, 229, 630, 795 |
| TspGWI | ACGGA | 4 cut(s) | 83, 386, 547, 797 |
| VpaK11BI | GGWCC | 3 cut(s) | 56, 447, 644 |
| XceI | RCATGY | 1 cut(s) | 460 |
| XmnI | GAANNNNTTC | 1 cut(s) | 301 |
| XspI | CTAG | 2 cut(s) | 5, 380 |