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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1321 |
| Acc65I | GGTACC | 1 cut(s) | 348 |
| AccB1I | GGYRCC | 2 cut(s) | 348, 1499 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1633 |
| AccBSI | CCGCTC | 3 cut(s) | 955, 1459, 1663 |
| AccI | GTMKAC | 1 cut(s) | 704 |
| AccIII | TCCGGA | 2 cut(s) | 1048, 1399 |
| AcsI | RAATTY | 1 cut(s) | 1716 |
| AcuI | CTGAAG | 8 cut(s) | 585, 1050, 1161, 1224, 1530, 1691, 1706, 1712 |
| AfaI | GTAC | 1 cut(s) | 350 |
| AfeI | AGCGCT | 1 cut(s) | 95 |
| AgsI | TTSAA | 3 cut(s) | 338, 440, 1721 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1883 |
| Alw21I | GWGCWC | 3 cut(s) | 321, 996, 1476 |
| Alw26I | GTCTC | 4 cut(s) | 353, 1716, 1799, 1818 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1121, 1385 |
| Ama87I | CYCGRG | 3 cut(s) | 377, 389, 989 |
| Aor13HI | TCCGGA | 2 cut(s) | 1048, 1399 |
| Aor51HI | AGCGCT | 1 cut(s) | 95 |
| ApeKI | GCWGC | 2 cut(s) | 608, 1841 |
| ApoI | RAATTY | 1 cut(s) | 1716 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 552, 584 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1380 |
| Asp718I | GGTACC | 1 cut(s) | 348 |
| AspLEI | GCGC | 6 cut(s) | 96, 113, 384, 421, 630, 1647 |
| AsuC2I | CCSGG | 1 cut(s) | 646 |
| AsuHPI | GGTGA | 5 cut(s) | 764, 856, 1422, 1670, 1694 |
| AsuNHI | GCTAGC | 1 cut(s) | 1832 |
| AvaI | CYCGRG | 3 cut(s) | 377, 389, 989 |
| AvaII | GGWCC | 6 cut(s) | 70, 260, 272, 710, 734, 1546 |
| AxyI | CCTNAGG | 1 cut(s) | 1023 |
| BanI | GGYRCC | 2 cut(s) | 348, 1499 |
| BanII | GRGCYC | 3 cut(s) | 321, 427, 996 |
| BbsI | GAAGAC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 3 cut(s) | 321, 996, 1476 |
| BbvCI | CCTCAGC | 2 cut(s) | 930, 966 |
| BbvI | GCAGC | 2 cut(s) | 595, 1853 |
| BccI | CCATC | 4 cut(s) | 472, 745, 862, 1511 |
| BceAI | ACGGC | 2 cut(s) | 518, 1599 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 747, 781 |
| BcnI | CCSGG | 1 cut(s) | 646 |
| BcoDI | GTCTC | 4 cut(s) | 353, 1716, 1799, 1818 |
| BfaI | CTAG | 5 cut(s) | 843, 1059, 1454, 1491, 1833 |
| BfmI | CTRYAG | 3 cut(s) | 549, 705, 1290 |
| BfoI | RGCGCY | 2 cut(s) | 97, 385 |
| BfuAI | ACCTGC | 1 cut(s) | 1321 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 617, 1598 |
| BglII | AGATCT | 1 cut(s) | 1723 |
| BisI | GCNGC | 9 cut(s) | 109, 141, 609, 612, 819, 985, 1043, 1797, 1842 |
| BlsI | GCNGC | 9 cut(s) | 110, 142, 610, 613, 820, 986, 1044, 1798, 1843 |
| Bme18I | GGWCC | 6 cut(s) | 70, 260, 272, 710, 734, 1546 |
| BmeT110I | CYCGRG | 3 cut(s) | 377, 389, 989 |
| BmrI | ACTGGG | 2 cut(s) | 199, 1510 |
| BmsI | GCATC | 3 cut(s) | 767, 768, 1279 |
| BmtI | GCTAGC | 1 cut(s) | 1836 |
| BmuI | ACTGGG | 2 cut(s) | 199, 1510 |
| BpiI | GAAGAC | 1 cut(s) | 579 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1652, 1684 |
| BpmI | CTGGAG | 4 cut(s) | 264, 1000, 1109, 1802 |
| Bpu10I | CCTNAGC | 4 cut(s) | 930, 966, 1362, 1792 |
| BpuEI | CTTGAG | 2 cut(s) | 364, 1119 |
| BpuMI | CCSGG | 1 cut(s) | 646 |
| BsaWI | WCCGGW | 2 cut(s) | 1048, 1399 |
| Bse1I | ACTGG | 6 cut(s) | 205, 274, 693, 1267, 1516, 1785 |
| Bse21I | CCTNAGG | 1 cut(s) | 1023 |
| BseAI | TCCGGA | 2 cut(s) | 1048, 1399 |
| BseGI | GGATG | 5 cut(s) | 400, 737, 758, 1270, 1893 |
| BseMII | CTCAG | 4 cut(s) | 944, 980, 1014, 1353 |
| BseNI | ACTGG | 6 cut(s) | 205, 274, 693, 1267, 1516, 1785 |
| BseRI | GAGGAG | 6 cut(s) | 267, 568, 754, 1247, 1268, 1476 |
| BseXI | GCAGC | 2 cut(s) | 595, 1853 |
| Bsh1285I | CGRYCG | 2 cut(s) | 882, 1007 |
| BshNI | GGYRCC | 2 cut(s) | 348, 1499 |
| BsiEI | CGRYCG | 2 cut(s) | 882, 1007 |
| BsiHKAI | GWGCWC | 3 cut(s) | 321, 996, 1476 |
| BsiHKCI | CYCGRG | 3 cut(s) | 377, 389, 989 |
| BsiSI | CCGG | 3 cut(s) | 646, 1049, 1400 |
| BslFI | GGGAC | 2 cut(s) | 83, 246 |
| BsmAI | GTCTC | 4 cut(s) | 353, 1716, 1799, 1818 |
| BsmBI | CGTCTC | 1 cut(s) | 1799 |
| BsmFI | GGGAC | 2 cut(s) | 83, 246 |
| BsmI | GAATGC | 2 cut(s) | 630, 1044 |
| BsoBI | CYCGRG | 3 cut(s) | 377, 389, 989 |
| Bsp1286I | GDGCHC | 4 cut(s) | 321, 427, 996, 1476 |
| Bsp13I | TCCGGA | 2 cut(s) | 1048, 1399 |
| Bsp143I | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| Bsp68I | TCGCGA | 2 cut(s) | 326, 1524 |
| BspCNI | CTCAG | 4 cut(s) | 943, 979, 1015, 1354 |
| BspEI | TCCGGA | 2 cut(s) | 1048, 1399 |
| BspMI | ACCTGC | 1 cut(s) | 1321 |
| BspOI | GCTAGC | 1 cut(s) | 1836 |
| BspQI | GCTCTTC | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 2 cut(s) | 348, 1499 |
| BsrBI | CCGCTC | 3 cut(s) | 955, 1459, 1663 |
| BsrI | ACTGG | 6 cut(s) | 205, 274, 693, 1267, 1516, 1785 |
| BssMI | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| BssT1I | CCWWGG | 2 cut(s) | 656, 716 |
| Bst4CI | ACNGT | 3 cut(s) | 1123, 1291, 1744 |
| Bst6I | CTCTTC | 4 cut(s) | 326, 435, 465, 1200 |
| BstDEI | CTNAG | 7 cut(s) | 10, 23, 930, 966, 1023, 1362, 1792 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1826 |
| BstF5I | GGATG | 5 cut(s) | 400, 737, 758, 1270, 1893 |
| BstH2I | RGCGCY | 2 cut(s) | 97, 385 |
| BstHHI | GCGC | 6 cut(s) | 96, 113, 384, 421, 630, 1647 |
| BstKTI | GATC | 6 cut(s) | 117, 529, 685, 813, 898, 1726 |
| BstMAI | GTCTC | 4 cut(s) | 353, 1716, 1799, 1818 |
| BstMBI | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| BstMCI | CGRYCG | 2 cut(s) | 882, 1007 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSFI | CTRYAG | 3 cut(s) | 549, 705, 1290 |
| BstV1I | GCAGC | 2 cut(s) | 595, 1853 |
| BstV2I | GAAGAC | 1 cut(s) | 579 |
| BstX2I | RGATCY | 1 cut(s) | 1723 |
| BstYI | RGATCY | 1 cut(s) | 1723 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1023 |
| BtsCI | GGATG | 5 cut(s) | 400, 737, 758, 1270, 1893 |
| BtsI | GCAGTG | 2 cut(s) | 1069, 1862 |
| BtsIMutI | CAGTG | 3 cut(s) | 1069, 1506, 1862 |
| BtuMI | TCGCGA | 2 cut(s) | 326, 1524 |
| BveI | ACCTGC | 1 cut(s) | 1321 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1121, 1385 |
| CfoI | GCGC | 6 cut(s) | 96, 113, 384, 421, 630, 1647 |
| CseI | GACGC | 2 cut(s) | 1816, 1879 |
| Csp6I | GTAC | 1 cut(s) | 349 |
| CviAII | CATG | 4 cut(s) | 53, 292, 1322, 1766 |
| CviQI | GTAC | 1 cut(s) | 349 |
| DdeI | CTNAG | 7 cut(s) | 10, 23, 930, 966, 1023, 1362, 1792 |
| DpnI | GATC | 6 cut(s) | 116, 528, 684, 812, 897, 1725 |
| DpnII | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| Eam1104I | CTCTTC | 4 cut(s) | 326, 435, 465, 1200 |
| EarI | CTCTTC | 4 cut(s) | 326, 435, 465, 1200 |
| Ecl136II | GAGCTC | 2 cut(s) | 319, 994 |
| Eco130I | CCWWGG | 2 cut(s) | 656, 716 |
| Eco24I | GRGCYC | 3 cut(s) | 321, 427, 996 |
| Eco47I | GGWCC | 6 cut(s) | 70, 260, 272, 710, 734, 1546 |
| Eco47III | AGCGCT | 1 cut(s) | 95 |
| Eco53kI | GAGCTC | 2 cut(s) | 319, 994 |
| Eco57I | CTGAAG | 8 cut(s) | 585, 1050, 1161, 1224, 1530, 1691, 1706, 1712 |
| Eco81I | CCTNAGG | 1 cut(s) | 1023 |
| Eco88I | CYCGRG | 3 cut(s) | 377, 389, 989 |
| EcoICRI | GAGCTC | 2 cut(s) | 319, 994 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1826 |
| EcoO109I | RGGNCCY | 5 cut(s) | 70, 710, 1405, 1546, 1618 |
| EcoT14I | CCWWGG | 2 cut(s) | 656, 716 |
| EcoT38I | GRGCYC | 3 cut(s) | 321, 427, 996 |
| ErhI | CCWWGG | 2 cut(s) | 656, 716 |
| Esp3I | CGTCTC | 1 cut(s) | 1799 |
| FaeI | CATG | 4 cut(s) | 56, 295, 1325, 1769 |
| FaqI | GGGAC | 2 cut(s) | 83, 246 |
| FatI | CATG | 4 cut(s) | 52, 291, 1321, 1765 |
| FauI | CCCGC | 6 cut(s) | 271, 424, 960, 1282, 1475, 1656 |
| FblI | GTMKAC | 1 cut(s) | 704 |
| Fnu4HI | GCNGC | 9 cut(s) | 109, 141, 609, 612, 819, 985, 1043, 1797, 1842 |
| FokI | GGATG | 5 cut(s) | 407, 724, 745, 1257, 1900 |
| FriOI | GRGCYC | 3 cut(s) | 321, 427, 996 |
| Fsp4HI | GCNGC | 9 cut(s) | 109, 141, 609, 612, 819, 985, 1043, 1797, 1842 |
| FspBI | CTAG | 5 cut(s) | 843, 1059, 1454, 1491, 1833 |
| GlaI | GCGC | 6 cut(s) | 95, 112, 383, 420, 629, 1646 |
| GluI | GCNGC | 9 cut(s) | 109, 141, 609, 612, 819, 985, 1043, 1797, 1842 |
| GsuI | CTGGAG | 4 cut(s) | 264, 1000, 1109, 1802 |
| HaeII | RGCGCY | 2 cut(s) | 97, 385 |
| HapII | CCGG | 3 cut(s) | 646, 1049, 1400 |
| HgaI | GACGC | 2 cut(s) | 1816, 1879 |
| HhaI | GCGC | 6 cut(s) | 96, 113, 384, 421, 630, 1647 |
| Hin1II | CATG | 4 cut(s) | 56, 295, 1325, 1769 |
| Hin6I | GCGC | 6 cut(s) | 94, 111, 382, 419, 628, 1645 |
| HinP1I | GCGC | 6 cut(s) | 94, 111, 382, 419, 628, 1645 |
| HincII | GTYRAC | 1 cut(s) | 482 |
| HindII | GTYRAC | 1 cut(s) | 482 |
| HindIII | AAGCTT | 1 cut(s) | 1688 |
| HinfI | GANTC | 8 cut(s) | 40, 365, 447, 575, 1106, 1483, 1637, 1699 |
| HpaII | CCGG | 3 cut(s) | 646, 1049, 1400 |
| HphI | GGTGA | 5 cut(s) | 764, 856, 1422, 1670, 1694 |
| Hpy166II | GTNNAC | 3 cut(s) | 482, 705, 1067 |
| Hpy188I | TCNGA | 8 cut(s) | 446, 469, 583, 859, 944, 974, 1004, 1215 |
| Hpy8I | GTNNAC | 3 cut(s) | 482, 705, 1067 |
| Hpy99I | CGWCG | 1 cut(s) | 1585 |
| HpyAV | CCTTC | 8 cut(s) | 498, 725, 911, 1025, 1258, 1455, 1715, 1810 |
| HpyCH4III | ACNGT | 3 cut(s) | 1123, 1291, 1744 |
| HpyCH4V | TGCA | 2 cut(s) | 304, 890 |
| HpyF3I | CTNAG | 7 cut(s) | 10, 23, 930, 966, 1023, 1362, 1792 |
| Hsp92II | CATG | 4 cut(s) | 56, 295, 1325, 1769 |
| HspAI | GCGC | 6 cut(s) | 94, 111, 382, 419, 628, 1645 |
| KflI | GGGWCCC | 1 cut(s) | 70 |
| Kpn2I | TCCGGA | 2 cut(s) | 1048, 1399 |
| KpnI | GGTACC | 1 cut(s) | 352 |
| Kzo9I | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| LguI | GCTCTTC | 1 cut(s) | 326 |
| Lsp1109I | GCAGC | 2 cut(s) | 595, 1853 |
| LweI | GCATC | 3 cut(s) | 767, 768, 1279 |
| MaeI | CTAG | 5 cut(s) | 843, 1059, 1454, 1491, 1833 |
| MaeIII | GTNAC | 5 cut(s) | 83, 155, 824, 1354, 1480 |
| MalI | GATC | 6 cut(s) | 116, 528, 684, 812, 897, 1725 |
| MbiI | CCGCTC | 3 cut(s) | 955, 1459, 1663 |
| MboI | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| MflI | RGATCY | 1 cut(s) | 1723 |
| MhlI | GDGCHC | 4 cut(s) | 321, 427, 996, 1476 |
| MluCI | AATT | 6 cut(s) | 255, 846, 1197, 1425, 1716, 1736 |
| MlyI | GAGTC | 4 cut(s) | 34, 569, 1477, 1631 |
| MmeI | TCCRAC | 6 cut(s) | 214, 424, 663, 931, 967, 1027 |
| MroI | TCCGGA | 2 cut(s) | 1048, 1399 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1380 |
| MseI | TTAA | 4 cut(s) | 507, 873, 1739, 1906 |
| MspA1I | CMGCKG | 1 cut(s) | 1277 |
| MspI | CCGG | 3 cut(s) | 646, 1049, 1400 |
| Mva1269I | GAATGC | 2 cut(s) | 630, 1044 |
| NciI | CCSGG | 1 cut(s) | 646 |
| NdeII | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| NheI | GCTAGC | 1 cut(s) | 1832 |
| NlaIII | CATG | 4 cut(s) | 56, 295, 1325, 1769 |
| NmeAIII | GCCGAG | 2 cut(s) | 174, 1862 |
| NmuCI | GTSAC | 3 cut(s) | 83, 824, 1480 |
| NruI | TCGCGA | 2 cut(s) | 326, 1524 |
| NspI | RCATGY | 1 cut(s) | 295 |
| PaeI | GCATGC | 1 cut(s) | 295 |
| PaeR7I | CTCGAG | 1 cut(s) | 989 |
| PciSI | GCTCTTC | 1 cut(s) | 326 |
| PctI | GAATGC | 2 cut(s) | 630, 1044 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1380 |
| PfeI | GAWTC | 4 cut(s) | 365, 447, 1106, 1699 |
| PflFI | GACNNNGTC | 1 cut(s) | 1810 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1633 |
| PfoI | TCCNGGA | 1 cut(s) | 1086 |
| PkrI | GCNGC | 9 cut(s) | 110, 142, 610, 613, 820, 986, 1044, 1798, 1843 |
| PleI | GAGTC | 4 cut(s) | 34, 569, 1477, 1631 |
| PpsI | GAGTC | 4 cut(s) | 34, 569, 1477, 1631 |
| PpuMI | RGGWCCY | 3 cut(s) | 70, 710, 1546 |
| Psp124BI | GAGCTC | 2 cut(s) | 321, 996 |
| Psp5II | RGGWCCY | 3 cut(s) | 70, 710, 1546 |
| PspPPI | RGGWCCY | 3 cut(s) | 70, 710, 1546 |
| PspXI | VCTCGAGB | 1 cut(s) | 989 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1121, 1385 |
| PsuI | RGATCY | 1 cut(s) | 1723 |
| PsyI | GACNNNGTC | 1 cut(s) | 1810 |
| RruI | TCGCGA | 2 cut(s) | 326, 1524 |
| RsaI | GTAC | 1 cut(s) | 350 |
| RsaNI | GTAC | 1 cut(s) | 349 |
| SacI | GAGCTC | 2 cut(s) | 321, 996 |
| SapI | GCTCTTC | 1 cut(s) | 326 |
| SaqAI | TTAA | 4 cut(s) | 507, 873, 1739, 1906 |
| SatI | GCNGC | 9 cut(s) | 109, 141, 609, 612, 819, 985, 1043, 1797, 1842 |
| Sau3AI | GATC | 6 cut(s) | 114, 526, 682, 810, 895, 1723 |
| SchI | GAGTC | 4 cut(s) | 34, 569, 1477, 1631 |
| SduI | GDGCHC | 4 cut(s) | 321, 427, 996, 1476 |
| SfaNI | GCATC | 3 cut(s) | 767, 768, 1279 |
| SfcI | CTRYAG | 3 cut(s) | 549, 705, 1290 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1598 |
| Sfr274I | CTCGAG | 1 cut(s) | 989 |
| SinI | GGWCC | 6 cut(s) | 70, 260, 272, 710, 734, 1546 |
| SlaI | CTCGAG | 1 cut(s) | 989 |
| SmlI | CTYRAG | 3 cut(s) | 343, 989, 1134 |
| SmoI | CTYRAG | 3 cut(s) | 343, 989, 1134 |
| SphI | GCATGC | 1 cut(s) | 295 |
| Sse9I | AATT | 6 cut(s) | 255, 846, 1197, 1425, 1716, 1736 |
| SspMI | CTAG | 5 cut(s) | 843, 1059, 1454, 1491, 1833 |
| SstI | GAGCTC | 2 cut(s) | 321, 996 |
| StyI | CCWWGG | 2 cut(s) | 656, 716 |
| TaaI | ACNGT | 3 cut(s) | 1123, 1291, 1744 |
| TaqI | TCGA | 9 cut(s) | 48, 570, 685, 961, 990, 1251, 1338, 1476, 1803 |
| TaqII | GACCGA | 1 cut(s) | 868 |
| TasI | AATT | 6 cut(s) | 255, 846, 1197, 1425, 1716, 1736 |
| TauI | GCSGC | 7 cut(s) | 111, 143, 614, 821, 987, 1045, 1799 |
| TfiI | GAWTC | 4 cut(s) | 365, 447, 1106, 1699 |
| Tru1I | TTAA | 4 cut(s) | 507, 873, 1739, 1906 |
| Tru9I | TTAA | 4 cut(s) | 507, 873, 1739, 1906 |
| TscAI | CASTG | 3 cut(s) | 1069, 1513, 1869 |
| TseFI | GTSAC | 3 cut(s) | 83, 824, 1480 |
| TseI | GCWGC | 2 cut(s) | 608, 1841 |
| Tsp45I | GTSAC | 3 cut(s) | 83, 824, 1480 |
| TspDTI | ATGAA | 4 cut(s) | 411, 683, 684, 1904 |
| TspGWI | ACGGA | 2 cut(s) | 733, 1178 |
| TspRI | CASTG | 3 cut(s) | 1069, 1513, 1869 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1810 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1633 |
| VpaK11BI | GGWCC | 6 cut(s) | 70, 260, 272, 710, 734, 1546 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1826 |
| XapI | RAATTY | 1 cut(s) | 1716 |
| XceI | RCATGY | 1 cut(s) | 295 |
| XhoI | CTCGAG | 1 cut(s) | 989 |
| XmiI | GTMKAC | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1380 |
| XspI | CTAG | 5 cut(s) | 843, 1059, 1454, 1491, 1833 |