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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 196 |
| AccII | CGCG | 3 cut(s) | 101, 264, 425 |
| AciI | CCGC | 8 cut(s) | 185, 196, 230, 262, 425, 453, 517, 558 |
| AclWI | GGATC | 2 cut(s) | 174, 313 |
| AcoI | YGGCCR | 2 cut(s) | 259, 426 |
| AcyI | GRCGYC | 2 cut(s) | 328, 441 |
| AfaI | GTAC | 1 cut(s) | 509 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 539 |
| AgsI | TTSAA | 1 cut(s) | 514 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 364, 396 |
| AluBI | AGCT | 3 cut(s) | 25, 69, 94 |
| AluI | AGCT | 3 cut(s) | 25, 69, 94 |
| Alw21I | GWGCWC | 1 cut(s) | 291 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| AlwI | GGATC | 2 cut(s) | 174, 313 |
| Ama87I | CYCGRG | 2 cut(s) | 191, 243 |
| AoxI | GGCC | 4 cut(s) | 246, 254, 259, 426 |
| ApaI | GGGCCC | 1 cut(s) | 258 |
| ApeKI | GCWGC | 2 cut(s) | 25, 69 |
| AspS9I | GGNCC | 3 cut(s) | 246, 254, 255 |
| AsuC2I | CCSGG | 3 cut(s) | 253, 258, 462 |
| AsuHPI | GGTGA | 1 cut(s) | 479 |
| AvaI | CYCGRG | 2 cut(s) | 191, 243 |
| AxyI | CCTNAGG | 1 cut(s) | 165 |
| BaeGI | GKGCMC | 1 cut(s) | 258 |
| BanII | GRGCYC | 1 cut(s) | 258 |
| BbsI | GAAGAC | 2 cut(s) | 306, 477 |
| Bbv12I | GWGCWC | 1 cut(s) | 291 |
| BbvI | GCAGC | 2 cut(s) | 12, 56 |
| BccI | CCATC | 4 cut(s) | 13, 113, 339, 548 |
| BceAI | ACGGC | 1 cut(s) | 236 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 7, 41, 134, 168 |
| BciVI | GTATCC | 1 cut(s) | 135 |
| BcnI | CCSGG | 3 cut(s) | 253, 258, 462 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BfuI | GTATCC | 1 cut(s) | 135 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 245 |
| BisI | GCNGC | 4 cut(s) | 26, 70, 262, 426 |
| BlsI | GCNGC | 4 cut(s) | 27, 71, 263, 427 |
| BmcAI | AGTACT | 1 cut(s) | 509 |
| Bme1390I | CCNGG | 3 cut(s) | 253, 258, 462 |
| BmeT110I | CYCGRG | 2 cut(s) | 191, 243 |
| BmgT120I | GGNCC | 3 cut(s) | 246, 254, 255 |
| BmiI | GGNNCC | 2 cut(s) | 256, 562 |
| BmrFI | CCNGG | 3 cut(s) | 253, 258, 462 |
| BmrI | ACTGGG | 1 cut(s) | 499 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BmuI | ACTGGG | 1 cut(s) | 499 |
| BpiI | GAAGAC | 2 cut(s) | 306, 477 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 534, 566 |
| BpmI | CTGGAG | 1 cut(s) | 94 |
| BpuMI | CCSGG | 3 cut(s) | 253, 258, 462 |
| BsaBI | GATNNNNATC | 1 cut(s) | 317 |
| BsaHI | GRCGYC | 2 cut(s) | 328, 441 |
| BsaJI | CCNNGG | 4 cut(s) | 29, 322, 384, 429 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 539 |
| Bse1I | ACTGG | 1 cut(s) | 505 |
| Bse21I | CCTNAGG | 1 cut(s) | 165 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 317 |
| BseDI | CCNNGG | 4 cut(s) | 29, 322, 384, 429 |
| BseGI | GGATG | 2 cut(s) | 241, 532 |
| BseJI | GATNNNNATC | 1 cut(s) | 317 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 539 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseNI | ACTGG | 1 cut(s) | 505 |
| BseRI | GAGGAG | 2 cut(s) | 295, 446 |
| BseSI | GKGCMC | 1 cut(s) | 258 |
| BseX3I | CGGCCG | 2 cut(s) | 259, 426 |
| BseXI | GCAGC | 2 cut(s) | 12, 56 |
| Bsh1236I | CGCG | 3 cut(s) | 101, 264, 425 |
| Bsh1285I | CGRYCG | 2 cut(s) | 262, 429 |
| BshFI | GGCC | 4 cut(s) | 248, 256, 261, 428 |
| BsiEI | CGRYCG | 2 cut(s) | 262, 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 291 |
| BsiHKCI | CYCGRG | 2 cut(s) | 191, 243 |
| BsiSI | CCGG | 4 cut(s) | 252, 258, 461, 540 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 539 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsnI | GGCC | 4 cut(s) | 248, 256, 261, 428 |
| BsoBI | CYCGRG | 2 cut(s) | 191, 243 |
| Bsp120I | GGGCCC | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 2 cut(s) | 258, 291 |
| Bsp143I | GATC | 3 cut(s) | 179, 318, 547 |
| Bsp68I | TCGCGA | 1 cut(s) | 101 |
| BspACI | CCGC | 8 cut(s) | 185, 196, 230, 262, 425, 453, 517, 558 |
| BspANI | GGCC | 4 cut(s) | 248, 256, 261, 428 |
| BspFNI | CGCG | 3 cut(s) | 101, 264, 425 |
| BspLI | GGNNCC | 2 cut(s) | 256, 562 |
| BspPI | GGATC | 2 cut(s) | 174, 313 |
| BsrBI | CCGCTC | 1 cut(s) | 196 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrI | ACTGG | 1 cut(s) | 505 |
| BssECI | CCNNGG | 4 cut(s) | 29, 322, 384, 429 |
| BssMI | GATC | 3 cut(s) | 179, 318, 547 |
| BssNI | GRCGYC | 2 cut(s) | 328, 441 |
| BssT1I | CCWWGG | 1 cut(s) | 384 |
| BstACI | GRCGYC | 2 cut(s) | 328, 441 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 157 |
| BstDEI | CTNAG | 1 cut(s) | 165 |
| BstDSI | CCRYGG | 1 cut(s) | 322 |
| BstF5I | GGATG | 2 cut(s) | 241, 532 |
| BstFNI | CGCG | 3 cut(s) | 101, 264, 425 |
| BstKTI | GATC | 3 cut(s) | 182, 321, 550 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 3 cut(s) | 179, 318, 547 |
| BstMCI | CGRYCG | 2 cut(s) | 262, 429 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 193, 236, 245, 425 |
| BstSCI | CCNGG | 3 cut(s) | 251, 256, 460 |
| BstSLI | GKGCMC | 1 cut(s) | 258 |
| BstUI | CGCG | 3 cut(s) | 101, 264, 425 |
| BstV1I | GCAGC | 2 cut(s) | 12, 56 |
| BstV2I | GAAGAC | 2 cut(s) | 306, 477 |
| BstX2I | RGATCY | 1 cut(s) | 318 |
| BstYI | RGATCY | 1 cut(s) | 318 |
| BstZI | CGGCCG | 2 cut(s) | 259, 426 |
| Bsu36I | CCTNAGG | 1 cut(s) | 165 |
| BsuI | GTATCC | 1 cut(s) | 135 |
| BsuRI | GGCC | 4 cut(s) | 248, 256, 261, 428 |
| BtgI | CCRYGG | 1 cut(s) | 322 |
| BtgZI | GCGATG | 1 cut(s) | 381 |
| BtsCI | GGATG | 2 cut(s) | 241, 532 |
| BtuMI | TCGCGA | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 157 |
| Cfr13I | GGNCC | 3 cut(s) | 246, 254, 255 |
| CseI | GACGC | 2 cut(s) | 336, 430 |
| Csp6I | GTAC | 1 cut(s) | 508 |
| CviAII | CATG | 1 cut(s) | 498 |
| CviQI | GTAC | 1 cut(s) | 508 |
| DdeI | CTNAG | 1 cut(s) | 165 |
| DpnI | GATC | 3 cut(s) | 181, 320, 549 |
| DpnII | GATC | 3 cut(s) | 179, 318, 547 |
| EaeI | YGGCCR | 2 cut(s) | 259, 426 |
| EagI | CGGCCG | 2 cut(s) | 259, 426 |
| EclXI | CGGCCG | 2 cut(s) | 259, 426 |
| Eco130I | CCWWGG | 1 cut(s) | 384 |
| Eco24I | GRGCYC | 1 cut(s) | 258 |
| Eco52I | CGGCCG | 2 cut(s) | 259, 426 |
| Eco81I | CCTNAGG | 1 cut(s) | 165 |
| Eco88I | CYCGRG | 2 cut(s) | 191, 243 |
| EcoT14I | CCWWGG | 1 cut(s) | 384 |
| EcoT38I | GRGCYC | 1 cut(s) | 258 |
| ErhI | CCWWGG | 1 cut(s) | 384 |
| FaeI | CATG | 1 cut(s) | 501 |
| FaiI | YATR | 5 cut(s) | 132, 210, 405, 476, 499 |
| FatI | CATG | 1 cut(s) | 497 |
| FauI | CCCGC | 4 cut(s) | 189, 192, 460, 510 |
| Fnu4HI | GCNGC | 4 cut(s) | 26, 70, 262, 426 |
| FokI | GGATG | 2 cut(s) | 248, 539 |
| FriOI | GRGCYC | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 4 cut(s) | 26, 70, 262, 426 |
| GluI | GCNGC | 4 cut(s) | 26, 70, 262, 426 |
| GsuI | CTGGAG | 1 cut(s) | 94 |
| HaeIII | GGCC | 4 cut(s) | 248, 256, 261, 428 |
| HapII | CCGG | 4 cut(s) | 252, 258, 461, 540 |
| HgaI | GACGC | 2 cut(s) | 336, 430 |
| Hin1I | GRCGYC | 2 cut(s) | 328, 441 |
| Hin1II | CATG | 1 cut(s) | 501 |
| HinfI | GANTC | 1 cut(s) | 302 |
| HpaII | CCGG | 4 cut(s) | 252, 258, 461, 540 |
| HphI | GGTGA | 1 cut(s) | 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 1 cut(s) | 204 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 100, 445, 551 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| Hpy99I | CGWCG | 1 cut(s) | 446 |
| HpyAV | CCTTC | 1 cut(s) | 516 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 193, 236, 245, 425 |
| HpyF3I | CTNAG | 1 cut(s) | 165 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| Hsp92I | GRCGYC | 2 cut(s) | 328, 441 |
| Hsp92II | CATG | 1 cut(s) | 501 |
| Kzo9I | GATC | 3 cut(s) | 179, 318, 547 |
| LmnI | GCTCC | 3 cut(s) | 22, 405, 560 |
| LpnPI | CCDG | 6 cut(s) | 58, 265, 271, 474, 518, 553 |
| Lsp1109I | GCAGC | 2 cut(s) | 12, 56 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MalI | GATC | 3 cut(s) | 181, 320, 549 |
| MbiI | CCGCTC | 1 cut(s) | 196 |
| MboI | GATC | 3 cut(s) | 179, 318, 547 |
| MboII | GAAGA | 4 cut(s) | 100, 311, 328, 482 |
| MflI | RGATCY | 1 cut(s) | 318 |
| MhlI | GDGCHC | 2 cut(s) | 258, 291 |
| MluCI | AATT | 2 cut(s) | 224, 343 |
| MlyI | GAGTC | 1 cut(s) | 296 |
| MnlI | CCTC | 9 cut(s) | 24, 49, 114, 166, 316, 387, 402, 424, 536 |
| MseI | TTAA | 2 cut(s) | 354, 390 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| MspI | CCGG | 4 cut(s) | 252, 258, 461, 540 |
| MspR9I | CCNGG | 3 cut(s) | 253, 258, 462 |
| MvnI | CGCG | 3 cut(s) | 101, 264, 425 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 193, 236, 245, 425 |
| NciI | CCSGG | 3 cut(s) | 253, 258, 462 |
| NdeII | GATC | 3 cut(s) | 179, 318, 547 |
| NlaIII | CATG | 1 cut(s) | 501 |
| NlaIV | GGNNCC | 2 cut(s) | 256, 562 |
| NmeAIII | GCCGAG | 3 cut(s) | 54, 454, 481 |
| NruI | TCGCGA | 1 cut(s) | 101 |
| PaeR7I | CTCGAG | 1 cut(s) | 191 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 404 |
| PflFI | GACNNNGTC | 1 cut(s) | 13 |
| PkrI | GCNGC | 4 cut(s) | 27, 71, 263, 427 |
| PleI | GAGTC | 1 cut(s) | 296 |
| PpsI | GAGTC | 1 cut(s) | 296 |
| PspN4I | GGNNCC | 2 cut(s) | 256, 562 |
| PspOMI | GGGCCC | 1 cut(s) | 254 |
| PspPI | GGNCC | 3 cut(s) | 246, 254, 255 |
| PspXI | VCTCGAGB | 1 cut(s) | 191 |
| PsuI | RGATCY | 1 cut(s) | 318 |
| PsyI | GACNNNGTC | 1 cut(s) | 13 |
| RruI | TCGCGA | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 509 |
| RsaNI | GTAC | 1 cut(s) | 508 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SaqAI | TTAA | 2 cut(s) | 354, 390 |
| SatI | GCNGC | 4 cut(s) | 26, 70, 262, 426 |
| Sau3AI | GATC | 3 cut(s) | 179, 318, 547 |
| Sau96I | GGNCC | 3 cut(s) | 246, 254, 255 |
| ScaI | AGTACT | 1 cut(s) | 509 |
| SchI | GAGTC | 1 cut(s) | 296 |
| ScrFI | CCNGG | 3 cut(s) | 253, 258, 462 |
| SduI | GDGCHC | 2 cut(s) | 258, 291 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| Sfr274I | CTCGAG | 1 cut(s) | 191 |
| SlaI | CTCGAG | 1 cut(s) | 191 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 1 cut(s) | 191 |
| SmoI | CTYRAG | 1 cut(s) | 191 |
| Sse9I | AATT | 2 cut(s) | 224, 343 |
| SsiI | CCGC | 8 cut(s) | 185, 196, 230, 262, 425, 453, 517, 558 |
| StyD4I | CCNGG | 3 cut(s) | 251, 256, 460 |
| StyI | CCWWGG | 1 cut(s) | 384 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 7 cut(s) | 17, 52, 171, 192, 308, 444, 552 |
| TasI | AATT | 2 cut(s) | 224, 343 |
| TatI | WGTACW | 1 cut(s) | 507 |
| TauI | GCSGC | 2 cut(s) | 264, 428 |
| Tru1I | TTAA | 2 cut(s) | 354, 390 |
| Tru9I | TTAA | 2 cut(s) | 354, 390 |
| TseI | GCWGC | 2 cut(s) | 25, 69 |
| TspDTI | ATGAA | 3 cut(s) | 17, 329, 543 |
| TspGWI | ACGGA | 1 cut(s) | 339 |
| Tth111I | GACNNNGTC | 1 cut(s) | 13 |
| XhoI | CTCGAG | 1 cut(s) | 191 |
| ZrmI | AGTACT | 1 cut(s) | 509 |