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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 22 |
| AccB1I | GGYRCC | 1 cut(s) | 416 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AccII | CGCG | 1 cut(s) | 294 |
| AciI | CCGC | 2 cut(s) | 95, 104 |
| AclWI | GGATC | 4 cut(s) | 49, 62, 269, 347 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcyI | GRCGYC | 1 cut(s) | 436 |
| AfaI | GTAC | 3 cut(s) | 152, 191, 432 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 121 |
| AgsI | TTSAA | 1 cut(s) | 254 |
| AhlI | ACTAGT | 1 cut(s) | 17 |
| AjnI | CCWGG | 2 cut(s) | 195, 268 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 2 cut(s) | 355, 360 |
| AluI | AGCT | 2 cut(s) | 355, 360 |
| Alw21I | GWGCWC | 1 cut(s) | 357 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 4 cut(s) | 49, 62, 269, 347 |
| AoxI | GGCC | 3 cut(s) | 28, 108, 400 |
| ApeKI | GCWGC | 2 cut(s) | 97, 344 |
| AspLEI | GCGC | 1 cut(s) | 296 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 416 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 357 |
| BbvI | GCAGC | 2 cut(s) | 84, 331 |
| BccI | CCATC | 1 cut(s) | 326 |
| BceAI | ACGGC | 1 cut(s) | 123 |
| BciT130I | CCWGG | 2 cut(s) | 197, 270 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BcuI | ACTAGT | 1 cut(s) | 17 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 399 |
| BisI | GCNGC | 2 cut(s) | 98, 345 |
| BlpI | GCTNAGC | 1 cut(s) | 356 |
| BlsI | GCNGC | 2 cut(s) | 99, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 197, 270 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmiI | GGNNCC | 3 cut(s) | 31, 56, 418 |
| BmrFI | CCNGG | 2 cut(s) | 197, 270 |
| BmsI | GCATC | 2 cut(s) | 13, 195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 356 |
| BsaHI | GRCGYC | 1 cut(s) | 436 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 121 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| BseBI | CCWGG | 2 cut(s) | 197, 270 |
| BseGI | GGATG | 4 cut(s) | 4, 90, 155, 205 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BseMII | CTCAG | 2 cut(s) | 342, 370 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BseXI | GCAGC | 2 cut(s) | 84, 331 |
| Bsh1236I | CGCG | 1 cut(s) | 294 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 30, 110, 402 |
| BshNI | GGYRCC | 1 cut(s) | 416 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiHKAI | GWGCWC | 1 cut(s) | 357 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BslFI | GGGAC | 1 cut(s) | 138 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsmFI | GGGAC | 1 cut(s) | 138 |
| BsnI | GGCC | 3 cut(s) | 30, 110, 402 |
| Bsp1286I | GDGCHC | 1 cut(s) | 357 |
| Bsp143I | GATC | 4 cut(s) | 54, 274, 289, 339 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 356 |
| BspACI | CCGC | 2 cut(s) | 95, 104 |
| BspANI | GGCC | 3 cut(s) | 30, 110, 402 |
| BspCNI | CTCAG | 2 cut(s) | 341, 369 |
| BspFNI | CGCG | 1 cut(s) | 294 |
| BspLI | GGNNCC | 3 cut(s) | 31, 56, 418 |
| BspPI | GGATC | 4 cut(s) | 49, 62, 269, 347 |
| BspQI | GCTCTTC | 1 cut(s) | 345 |
| BspT107I | GGYRCC | 1 cut(s) | 416 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssMI | GATC | 4 cut(s) | 54, 274, 289, 339 |
| BssNI | GRCGYC | 1 cut(s) | 436 |
| Bst2UI | CCWGG | 2 cut(s) | 197, 270 |
| Bst4CI | ACNGT | 2 cut(s) | 129, 287 |
| Bst6I | CTCTTC | 1 cut(s) | 345 |
| BstACI | GRCGYC | 1 cut(s) | 436 |
| BstC8I | GCNNGC | 3 cut(s) | 108, 298, 391 |
| BstDEI | CTNAG | 2 cut(s) | 328, 356 |
| BstF5I | GGATG | 4 cut(s) | 4, 90, 155, 205 |
| BstFNI | CGCG | 1 cut(s) | 294 |
| BstHHI | GCGC | 1 cut(s) | 296 |
| BstKTI | GATC | 4 cut(s) | 57, 277, 292, 342 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 4 cut(s) | 54, 274, 289, 339 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 103, 279, 302, 399 |
| BstNI | CCWGG | 2 cut(s) | 197, 270 |
| BstSCI | CCNGG | 2 cut(s) | 195, 268 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstUI | CGCG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 2 cut(s) | 84, 331 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 30, 110, 402 |
| BtsCI | GGATG | 4 cut(s) | 4, 90, 155, 205 |
| BtsIMutI | CAGTG | 2 cut(s) | 134, 292 |
| Cac8I | GCNNGC | 3 cut(s) | 108, 298, 391 |
| CfoI | GCGC | 1 cut(s) | 296 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| CseI | GACGC | 1 cut(s) | 444 |
| Csp6I | GTAC | 3 cut(s) | 151, 190, 431 |
| CviJI | RGCY | 8 cut(s) | 30, 110, 138, 261, 305, 355, 360, 402 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 110, 138, 261, 305, 355, 360, 402 |
| CviQI | GTAC | 3 cut(s) | 151, 190, 431 |
| DdeI | CTNAG | 2 cut(s) | 328, 356 |
| DpnI | GATC | 4 cut(s) | 56, 276, 291, 341 |
| DpnII | GATC | 4 cut(s) | 54, 274, 289, 339 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 22 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 22 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 1 cut(s) | 345 |
| EarI | CTCTTC | 1 cut(s) | 345 |
| EciI | GGCGGA | 1 cut(s) | 93 |
| Ecl136II | GAGCTC | 1 cut(s) | 355 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco53kI | GAGCTC | 1 cut(s) | 355 |
| EcoICRI | GAGCTC | 1 cut(s) | 355 |
| EcoRII | CCWGG | 2 cut(s) | 195, 268 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| FaiI | YATR | 3 cut(s) | 23, 211, 221 |
| FaqI | GGGAC | 1 cut(s) | 138 |
| FauI | CCCGC | 1 cut(s) | 102 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 345 |
| FokI | GGATG | 3 cut(s) | 77, 142, 212 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 345 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 295 |
| GluI | GCNGC | 2 cut(s) | 98, 345 |
| HaeIII | GGCC | 3 cut(s) | 30, 110, 402 |
| HapII | CCGG | 1 cut(s) | 107 |
| HgaI | GACGC | 1 cut(s) | 444 |
| HhaI | GCGC | 1 cut(s) | 296 |
| Hin1I | GRCGYC | 1 cut(s) | 436 |
| Hin6I | GCGC | 1 cut(s) | 294 |
| HinP1I | GCGC | 1 cut(s) | 294 |
| HinfI | GANTC | 1 cut(s) | 237 |
| HpaII | CCGG | 1 cut(s) | 107 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 331 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 83, 337 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 438 |
| HpyAV | CCTTC | 1 cut(s) | 275 |
| HpyCH4III | ACNGT | 2 cut(s) | 129, 287 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 103, 279, 302, 399 |
| HpyF3I | CTNAG | 2 cut(s) | 328, 356 |
| Hsp92I | GRCGYC | 1 cut(s) | 436 |
| HspAI | GCGC | 1 cut(s) | 294 |
| KroI | GCCGGC | 1 cut(s) | 106 |
| KroNI | GCCGGC | 1 cut(s) | 108 |
| Kzo9I | GATC | 4 cut(s) | 54, 274, 289, 339 |
| LguI | GCTCTTC | 1 cut(s) | 345 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 331 |
| LweI | GCATC | 2 cut(s) | 13, 195 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MalI | GATC | 4 cut(s) | 56, 276, 291, 341 |
| MboI | GATC | 4 cut(s) | 54, 274, 289, 339 |
| MboII | GAAGA | 2 cut(s) | 67, 362 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MhlI | GDGCHC | 1 cut(s) | 357 |
| MluCI | AATT | 3 cut(s) | 222, 395, 410 |
| MnlI | CCTC | 6 cut(s) | 136, 171, 203, 288, 323, 413 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 106 |
| MspA1I | CMGCKG | 1 cut(s) | 97 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 2 cut(s) | 197, 270 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MvaI | CCWGG | 2 cut(s) | 197, 270 |
| MvnI | CGCG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 103, 279, 302, 399 |
| NaeI | GCCGGC | 1 cut(s) | 108 |
| NdeII | GATC | 4 cut(s) | 54, 274, 289, 339 |
| NgoMIV | GCCGGC | 1 cut(s) | 106 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 56, 418 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PciSI | GCTCTTC | 1 cut(s) | 345 |
| PdiI | GCCGGC | 1 cut(s) | 108 |
| PfeI | GAWTC | 1 cut(s) | 237 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PfoI | TCCNGGA | 1 cut(s) | 195 |
| PkrI | GCNGC | 2 cut(s) | 99, 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 357 |
| Psp6I | CCWGG | 2 cut(s) | 195, 268 |
| PspGI | CCWGG | 2 cut(s) | 195, 268 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 56, 418 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| RsaI | GTAC | 3 cut(s) | 152, 191, 432 |
| RsaNI | GTAC | 3 cut(s) | 151, 190, 431 |
| SacI | GAGCTC | 1 cut(s) | 357 |
| SapI | GCTCTTC | 1 cut(s) | 345 |
| SatI | GCNGC | 2 cut(s) | 98, 345 |
| Sau3AI | GATC | 4 cut(s) | 54, 274, 289, 339 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 2 cut(s) | 197, 270 |
| SduI | GDGCHC | 1 cut(s) | 357 |
| SetI | ASST | 5 cut(s) | 152, 195, 247, 357, 362 |
| SfaNI | GCATC | 2 cut(s) | 13, 195 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SpeI | ACTAGT | 1 cut(s) | 17 |
| Sse9I | AATT | 3 cut(s) | 222, 395, 410 |
| SsiI | CCGC | 2 cut(s) | 95, 104 |
| SspMI | CTAG | 1 cut(s) | 18 |
| SstI | GAGCTC | 1 cut(s) | 357 |
| StyD4I | CCNGG | 2 cut(s) | 195, 268 |
| TaaI | ACNGT | 2 cut(s) | 129, 287 |
| TasI | AATT | 3 cut(s) | 222, 395, 410 |
| TfiI | GAWTC | 1 cut(s) | 237 |
| TscAI | CASTG | 2 cut(s) | 134, 292 |
| TseI | GCWGC | 2 cut(s) | 97, 344 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| TspRI | CASTG | 2 cut(s) | 134, 292 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| XspI | CTAG | 1 cut(s) | 18 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |