Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 230 |
| AccB1I | GGYRCC | 2 cut(s) | 32, 617 |
| AccBSI | CCGCTC | 1 cut(s) | 301 |
| AccII | CGCG | 1 cut(s) | 282 |
| AciI | CCGC | 7 cut(s) | 128, 222, 282, 299, 330, 495, 642 |
| AcoI | YGGCCR | 2 cut(s) | 468, 639 |
| AcyI | GRCGYC | 1 cut(s) | 150 |
| AfaI | GTAC | 1 cut(s) | 694 |
| AfeI | AGCGCT | 1 cut(s) | 487 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 284, 413, 670 |
| AgsI | TTSAA | 1 cut(s) | 271 |
| AjnI | CCWGG | 2 cut(s) | 208, 620 |
| Alw26I | GTCTC | 1 cut(s) | 207 |
| Ama87I | CYCGRG | 1 cut(s) | 505 |
| Aor51HI | AGCGCT | 1 cut(s) | 487 |
| AoxI | GGCC | 6 cut(s) | 118, 182, 400, 468, 639, 674 |
| ApaI | GGGCCC | 2 cut(s) | 122, 678 |
| ApeKI | GCWGC | 4 cut(s) | 17, 236, 305, 483 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 338, 370 |
| AspLEI | GCGC | 1 cut(s) | 488 |
| AspS9I | GGNCC | 6 cut(s) | 118, 119, 183, 624, 674, 675 |
| AsuC2I | CCSGG | 3 cut(s) | 112, 143, 530 |
| AsuHPI | GGTGA | 1 cut(s) | 238 |
| AvaI | CYCGRG | 1 cut(s) | 505 |
| AvaII | GGWCC | 1 cut(s) | 624 |
| BaeGI | GKGCMC | 3 cut(s) | 35, 122, 678 |
| BalI | TGGCCA | 1 cut(s) | 470 |
| BanI | GGYRCC | 2 cut(s) | 32, 617 |
| BanII | GRGCYC | 3 cut(s) | 122, 656, 678 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BbvI | GCAGC | 4 cut(s) | 4, 223, 292, 495 |
| BccI | CCATC | 4 cut(s) | 111, 401, 416, 504 |
| BceAI | ACGGC | 2 cut(s) | 30, 654 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 22, 33, 56 |
| BciT130I | CCWGG | 2 cut(s) | 210, 622 |
| BcnI | CCSGG | 3 cut(s) | 112, 143, 530 |
| BcoDI | GTCTC | 1 cut(s) | 207 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BfoI | RGCGCY | 1 cut(s) | 489 |
| BfuAI | ACCTGC | 1 cut(s) | 230 |
| BisI | GCNGC | 6 cut(s) | 18, 237, 299, 306, 484, 642 |
| BlsI | GCNGC | 6 cut(s) | 19, 238, 300, 307, 485, 643 |
| Bme1390I | CCNGG | 5 cut(s) | 112, 143, 210, 530, 622 |
| Bme18I | GGWCC | 1 cut(s) | 624 |
| BmeT110I | CYCGRG | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 6 cut(s) | 118, 119, 183, 624, 674, 675 |
| BmiI | GGNNCC | 5 cut(s) | 34, 120, 619, 675, 676 |
| BmrFI | CCNGG | 5 cut(s) | 112, 143, 210, 530, 622 |
| BmsI | GCATC | 2 cut(s) | 48, 378 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 358, 390 |
| BpmI | CTGGAG | 1 cut(s) | 231 |
| Bpu10I | CCTNAGC | 1 cut(s) | 631 |
| BpuEI | CTTGAG | 1 cut(s) | 584 |
| BpuMI | CCSGG | 3 cut(s) | 112, 143, 530 |
| BsaHI | GRCGYC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 1 cut(s) | 465 |
| BsaWI | WCCGGW | 1 cut(s) | 545 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 69, 99 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 284, 413, 670 |
| Bse118I | RCCGGY | 1 cut(s) | 180 |
| Bse1I | ACTGG | 3 cut(s) | 191, 403, 619 |
| BseBI | CCWGG | 2 cut(s) | 210, 622 |
| BseDI | CCNNGG | 1 cut(s) | 465 |
| BseGI | GGATG | 2 cut(s) | 384, 525 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 284, 413, 670 |
| BseNI | ACTGG | 3 cut(s) | 191, 403, 619 |
| BseRI | GAGGAG | 1 cut(s) | 589 |
| BseSI | GKGCMC | 3 cut(s) | 35, 122, 678 |
| BseX3I | CGGCCG | 1 cut(s) | 639 |
| BseXI | GCAGC | 4 cut(s) | 4, 223, 292, 495 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| BsgI | GTGCAG | 1 cut(s) | 577 |
| Bsh1236I | CGCG | 1 cut(s) | 282 |
| Bsh1285I | CGRYCG | 3 cut(s) | 226, 546, 642 |
| BshFI | GGCC | 6 cut(s) | 120, 184, 402, 470, 641, 676 |
| BshNI | GGYRCC | 2 cut(s) | 32, 617 |
| BsiEI | CGRYCG | 3 cut(s) | 226, 546, 642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 505 |
| BsiSI | CCGG | 5 cut(s) | 111, 143, 181, 529, 546 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 284, 413, 670 |
| BsmAI | GTCTC | 1 cut(s) | 207 |
| BsmI | GAATGC | 2 cut(s) | 51, 238 |
| BsnI | GGCC | 6 cut(s) | 120, 184, 402, 470, 641, 676 |
| BsoBI | CYCGRG | 1 cut(s) | 505 |
| Bsp120I | GGGCCC | 2 cut(s) | 118, 674 |
| Bsp1286I | GDGCHC | 4 cut(s) | 35, 122, 656, 678 |
| Bsp19I | CCATGG | 1 cut(s) | 465 |
| BspACI | CCGC | 7 cut(s) | 128, 222, 282, 299, 330, 495, 642 |
| BspANI | GGCC | 6 cut(s) | 120, 184, 402, 470, 641, 676 |
| BspFNI | CGCG | 1 cut(s) | 282 |
| BspLI | GGNNCC | 5 cut(s) | 34, 120, 619, 675, 676 |
| BspMAI | CTGCAG | 1 cut(s) | 241 |
| BspMI | ACCTGC | 1 cut(s) | 230 |
| BspT107I | GGYRCC | 2 cut(s) | 32, 617 |
| BsrBI | CCGCTC | 1 cut(s) | 301 |
| BsrFI | RCCGGY | 1 cut(s) | 180 |
| BsrI | ACTGG | 3 cut(s) | 191, 403, 619 |
| BssAI | RCCGGY | 1 cut(s) | 180 |
| BssECI | CCNNGG | 1 cut(s) | 465 |
| BssNI | GRCGYC | 1 cut(s) | 150 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst2UI | CCWGG | 2 cut(s) | 210, 622 |
| BstACI | GRCGYC | 1 cut(s) | 150 |
| BstC8I | GCNNGC | 4 cut(s) | 182, 303, 404, 419 |
| BstDEI | CTNAG | 1 cut(s) | 631 |
| BstDSI | CCRYGG | 1 cut(s) | 465 |
| BstF5I | GGATG | 2 cut(s) | 384, 525 |
| BstFNI | CGCG | 1 cut(s) | 282 |
| BstH2I | RGCGCY | 1 cut(s) | 489 |
| BstHHI | GCGC | 1 cut(s) | 488 |
| BstMAI | GTCTC | 1 cut(s) | 207 |
| BstMCI | CGRYCG | 3 cut(s) | 226, 546, 642 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 427, 492, 641 |
| BstNI | CCWGG | 2 cut(s) | 210, 622 |
| BstNSI | RCATGY | 1 cut(s) | 690 |
| BstSCI | CCNGG | 5 cut(s) | 110, 141, 208, 528, 620 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstSLI | GKGCMC | 3 cut(s) | 35, 122, 678 |
| BstUI | CGCG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 4 cut(s) | 4, 223, 292, 495 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BstZI | CGGCCG | 1 cut(s) | 639 |
| BsuRI | GGCC | 6 cut(s) | 120, 184, 402, 470, 641, 676 |
| BtgI | CCRYGG | 1 cut(s) | 465 |
| BtsCI | GGATG | 2 cut(s) | 384, 525 |
| BtsIMutI | CAGTG | 2 cut(s) | 396, 612 |
| BveI | ACCTGC | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 4 cut(s) | 182, 303, 404, 419 |
| CfoI | GCGC | 1 cut(s) | 488 |
| Cfr10I | RCCGGY | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 6 cut(s) | 118, 119, 183, 624, 674, 675 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 1 cut(s) | 693 |
| CviAII | CATG | 4 cut(s) | 431, 466, 472, 687 |
| CviQI | GTAC | 1 cut(s) | 693 |
| DdeI | CTNAG | 1 cut(s) | 631 |
| EaeI | YGGCCR | 2 cut(s) | 468, 639 |
| EagI | CGGCCG | 1 cut(s) | 639 |
| EclXI | CGGCCG | 1 cut(s) | 639 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco24I | GRGCYC | 3 cut(s) | 122, 656, 678 |
| Eco47I | GGWCC | 1 cut(s) | 624 |
| Eco47III | AGCGCT | 1 cut(s) | 487 |
| Eco52I | CGGCCG | 1 cut(s) | 639 |
| Eco88I | CYCGRG | 1 cut(s) | 505 |
| EcoO109I | RGGNCCY | 2 cut(s) | 674, 675 |
| EcoRII | CCWGG | 2 cut(s) | 208, 620 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EcoT38I | GRGCYC | 3 cut(s) | 122, 656, 678 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| FaeI | CATG | 4 cut(s) | 434, 469, 475, 690 |
| FatI | CATG | 4 cut(s) | 430, 465, 471, 686 |
| Fnu4HI | GCNGC | 6 cut(s) | 18, 237, 299, 306, 484, 642 |
| FokI | GGATG | 2 cut(s) | 371, 512 |
| FriOI | GRGCYC | 3 cut(s) | 122, 656, 678 |
| Fsp4HI | GCNGC | 6 cut(s) | 18, 237, 299, 306, 484, 642 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GlaI | GCGC | 1 cut(s) | 487 |
| GluI | GCNGC | 6 cut(s) | 18, 237, 299, 306, 484, 642 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| GsuI | CTGGAG | 1 cut(s) | 231 |
| HaeII | RGCGCY | 1 cut(s) | 489 |
| HaeIII | GGCC | 6 cut(s) | 120, 184, 402, 470, 641, 676 |
| HapII | CCGG | 5 cut(s) | 111, 143, 181, 529, 546 |
| HgaI | GACGC | 1 cut(s) | 158 |
| HhaI | GCGC | 1 cut(s) | 488 |
| Hin1I | GRCGYC | 1 cut(s) | 150 |
| Hin1II | CATG | 4 cut(s) | 434, 469, 475, 690 |
| Hin6I | GCGC | 1 cut(s) | 486 |
| HinP1I | GCGC | 1 cut(s) | 486 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HinfI | GANTC | 3 cut(s) | 205, 443, 552 |
| HpaII | CCGG | 5 cut(s) | 111, 143, 181, 529, 546 |
| HphI | GGTGA | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 451 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 100, 200, 658 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 322 |
| Hpy8I | GTNNAC | 1 cut(s) | 451 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 2 cut(s) | 98, 195 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 430, 475, 594 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 427, 492, 641 |
| HpyF3I | CTNAG | 1 cut(s) | 631 |
| Hsp92I | GRCGYC | 1 cut(s) | 150 |
| Hsp92II | CATG | 4 cut(s) | 434, 469, 475, 690 |
| HspAI | GCGC | 1 cut(s) | 486 |
| KroI | GCCGGC | 1 cut(s) | 180 |
| KroNI | GCCGGC | 1 cut(s) | 182 |
| Lsp1109I | GCAGC | 4 cut(s) | 4, 223, 292, 495 |
| LweI | GCATC | 2 cut(s) | 48, 378 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MbiI | CCGCTC | 1 cut(s) | 301 |
| MboII | GAAGA | 2 cut(s) | 161, 266 |
| MhlI | GDGCHC | 4 cut(s) | 35, 122, 656, 678 |
| MlsI | TGGCCA | 1 cut(s) | 470 |
| MluCI | AATT | 2 cut(s) | 2, 437 |
| MluNI | TGGCCA | 1 cut(s) | 470 |
| MlyI | GAGTC | 1 cut(s) | 199 |
| MmeI | TCCRAC | 2 cut(s) | 123, 360 |
| Mox20I | TGGCCA | 1 cut(s) | 470 |
| MroNI | GCCGGC | 1 cut(s) | 180 |
| MscI | TGGCCA | 1 cut(s) | 470 |
| MseI | TTAA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 1 cut(s) | 470 |
| Msp20I | TGGCCA | 1 cut(s) | 470 |
| MspI | CCGG | 5 cut(s) | 111, 143, 181, 529, 546 |
| MspR9I | CCNGG | 5 cut(s) | 112, 143, 210, 530, 622 |
| Mva1269I | GAATGC | 2 cut(s) | 51, 238 |
| MvaI | CCWGG | 2 cut(s) | 210, 622 |
| MvnI | CGCG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 427, 492, 641 |
| NaeI | GCCGGC | 1 cut(s) | 182 |
| NciI | CCSGG | 3 cut(s) | 112, 143, 530 |
| NcoI | CCATGG | 1 cut(s) | 465 |
| NgoMIV | GCCGGC | 1 cut(s) | 180 |
| NlaIII | CATG | 4 cut(s) | 434, 469, 475, 690 |
| NlaIV | GGNNCC | 5 cut(s) | 34, 120, 619, 675, 676 |
| NspI | RCATGY | 1 cut(s) | 690 |
| PctI | GAATGC | 2 cut(s) | 51, 238 |
| PdiI | GCCGGC | 1 cut(s) | 182 |
| PfeI | GAWTC | 2 cut(s) | 443, 552 |
| PfoI | TCCNGGA | 3 cut(s) | 141, 208, 528 |
| PkrI | GCNGC | 6 cut(s) | 19, 238, 300, 307, 485, 643 |
| PleI | GAGTC | 1 cut(s) | 199 |
| PpsI | GAGTC | 1 cut(s) | 199 |
| Psp6I | CCWGG | 2 cut(s) | 208, 620 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 2 cut(s) | 208, 620 |
| PspN4I | GGNNCC | 5 cut(s) | 34, 120, 619, 675, 676 |
| PspOMI | GGGCCC | 2 cut(s) | 118, 674 |
| PspPI | GGNCC | 6 cut(s) | 118, 119, 183, 624, 674, 675 |
| PstI | CTGCAG | 1 cut(s) | 241 |
| RsaI | GTAC | 1 cut(s) | 694 |
| RsaNI | GTAC | 1 cut(s) | 693 |
| RseI | CAYNNNNRTG | 1 cut(s) | 470 |
| SaqAI | TTAA | 1 cut(s) | 5 |
| SatI | GCNGC | 6 cut(s) | 18, 237, 299, 306, 484, 642 |
| Sau96I | GGNCC | 6 cut(s) | 118, 119, 183, 624, 674, 675 |
| SchI | GAGTC | 1 cut(s) | 199 |
| ScrFI | CCNGG | 5 cut(s) | 112, 143, 210, 530, 622 |
| SduI | GDGCHC | 4 cut(s) | 35, 122, 656, 678 |
| SetI | ASST | 8 cut(s) | 136, 244, 356, 481, 599, 623, 629, 666 |
| SfaNI | GCATC | 2 cut(s) | 48, 378 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SinI | GGWCC | 1 cut(s) | 624 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 470 |
| SmlI | CTYRAG | 1 cut(s) | 563 |
| SmoI | CTYRAG | 1 cut(s) | 563 |
| Sse9I | AATT | 2 cut(s) | 2, 437 |
| SsiI | CCGC | 7 cut(s) | 128, 222, 282, 299, 330, 495, 642 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 5 cut(s) | 110, 141, 208, 528, 620 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaqI | TCGA | 1 cut(s) | 76 |
| TasI | AATT | 2 cut(s) | 2, 437 |
| TauI | GCSGC | 2 cut(s) | 301, 644 |
| TfiI | GAWTC | 2 cut(s) | 443, 552 |
| Tru1I | TTAA | 1 cut(s) | 5 |
| Tru9I | TTAA | 1 cut(s) | 5 |
| TscAI | CASTG | 2 cut(s) | 403, 619 |
| TseI | GCWGC | 4 cut(s) | 17, 236, 305, 483 |
| TspDTI | ATGAA | 3 cut(s) | 62, 489, 574 |
| TspRI | CASTG | 2 cut(s) | 403, 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 624 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XceI | RCATGY | 1 cut(s) | 690 |
| XspI | CTAG | 1 cut(s) | 59 |