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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 242 |
| AccB1I | GGYRCC | 1 cut(s) | 440 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AccII | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| AccIII | TCCGGA | 1 cut(s) | 729 |
| AciI | CCGC | 9 cut(s) | 74, 109, 283, 387, 502, 520, 553, 566, 616 |
| AclWI | GGATC | 6 cut(s) | 196, 518, 601, 614, 727, 740 |
| AcoI | YGGCCR | 1 cut(s) | 106 |
| AcyI | GRCGYC | 1 cut(s) | 230 |
| AfaI | GTAC | 1 cut(s) | 213 |
| AfeI | AGCGCT | 1 cut(s) | 657 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 273, 274, 337, 338, 487, 626 |
| AflII | CTTAAG | 1 cut(s) | 548 |
| AgsI | TTSAA | 2 cut(s) | 430, 590 |
| AjiI | CACGTC | 1 cut(s) | 541 |
| AluBI | AGCT | 3 cut(s) | 150, 411, 747 |
| AluI | AGCT | 3 cut(s) | 150, 411, 747 |
| Alw21I | GWGCWC | 3 cut(s) | 152, 413, 495 |
| Alw26I | GTCTC | 2 cut(s) | 547, 624 |
| AlwI | GGATC | 6 cut(s) | 196, 518, 601, 614, 727, 740 |
| Aor13HI | TCCGGA | 1 cut(s) | 729 |
| Aor51HI | AGCGCT | 1 cut(s) | 657 |
| AoxI | GGCC | 4 cut(s) | 106, 195, 264, 592 |
| ApeKI | GCWGC | 1 cut(s) | 668 |
| AspLEI | GCGC | 6 cut(s) | 92, 94, 96, 257, 658, 797 |
| AspS9I | GGNCC | 3 cut(s) | 265, 721, 727 |
| AsuC2I | CCSGG | 4 cut(s) | 66, 234, 313, 725 |
| AsuHPI | GGTGA | 1 cut(s) | 30 |
| AsuII | TTCGAA | 1 cut(s) | 644 |
| AvaII | GGWCC | 2 cut(s) | 721, 727 |
| BamHI | GGATCC | 2 cut(s) | 606, 732 |
| BanI | GGYRCC | 1 cut(s) | 440 |
| BanII | GRGCYC | 4 cut(s) | 152, 413, 537, 574 |
| BauI | CACGAG | 1 cut(s) | 752 |
| BbsI | GAAGAC | 1 cut(s) | 578 |
| Bbv12I | GWGCWC | 3 cut(s) | 152, 413, 495 |
| BbvI | GCAGC | 1 cut(s) | 680 |
| BccI | CCATC | 3 cut(s) | 279, 331, 481 |
| BcnI | CCSGG | 4 cut(s) | 66, 234, 313, 725 |
| BcoDI | GTCTC | 2 cut(s) | 547, 624 |
| BfaI | CTAG | 2 cut(s) | 47, 737 |
| BfoI | RGCGCY | 2 cut(s) | 659, 798 |
| BfrI | CTTAAG | 1 cut(s) | 548 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| BisI | GCNGC | 2 cut(s) | 109, 669 |
| BlsI | GCNGC | 2 cut(s) | 110, 670 |
| Bme1390I | CCNGG | 4 cut(s) | 66, 234, 313, 725 |
| Bme18I | GGWCC | 2 cut(s) | 721, 727 |
| BmgBI | CACGTC | 1 cut(s) | 541 |
| BmgT120I | GGNCC | 3 cut(s) | 265, 721, 727 |
| BmiI | GGNNCC | 4 cut(s) | 442, 608, 723, 734 |
| BmrFI | CCNGG | 4 cut(s) | 66, 234, 313, 725 |
| BmsI | GCATC | 3 cut(s) | 440, 772, 794 |
| BpiI | GAAGAC | 1 cut(s) | 578 |
| Bpu14I | TTCGAA | 1 cut(s) | 644 |
| BpuEI | CTTGAG | 1 cut(s) | 562 |
| BpuMI | CCSGG | 4 cut(s) | 66, 234, 313, 725 |
| BsaHI | GRCGYC | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 332, 436 |
| BsaWI | WCCGGW | 2 cut(s) | 729, 778 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 618, 648 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 273, 274, 337, 338, 487, 626 |
| Bse118I | RCCGGY | 3 cut(s) | 285, 594, 712 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| Bse3DI | GCAATG | 1 cut(s) | 367 |
| BseAI | TCCGGA | 1 cut(s) | 729 |
| BseDI | CCNNGG | 3 cut(s) | 64, 332, 436 |
| BseGI | GGATG | 6 cut(s) | 342, 408, 455, 682, 763, 787 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 273, 274, 337, 338, 487, 626 |
| BseMI | GCAATG | 1 cut(s) | 367 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BsePI | GCGCGC | 2 cut(s) | 90, 92 |
| BseRI | GAGGAG | 1 cut(s) | 642 |
| BseXI | GCAGC | 1 cut(s) | 680 |
| Bsh1236I | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| BshFI | GGCC | 4 cut(s) | 108, 197, 266, 594 |
| BshNI | GGYRCC | 1 cut(s) | 440 |
| BsiHKAI | GWGCWC | 3 cut(s) | 152, 413, 495 |
| BslFI | GGGAC | 2 cut(s) | 290, 707 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 273, 274, 337, 338, 487, 626 |
| BsmAI | GTCTC | 2 cut(s) | 547, 624 |
| BsmBI | CGTCTC | 2 cut(s) | 547, 624 |
| BsmFI | GGGAC | 2 cut(s) | 290, 707 |
| BsnI | GGCC | 4 cut(s) | 108, 197, 266, 594 |
| Bsp119I | TTCGAA | 1 cut(s) | 644 |
| Bsp1286I | GDGCHC | 5 cut(s) | 152, 413, 495, 537, 574 |
| Bsp13I | TCCGGA | 1 cut(s) | 729 |
| Bsp143I | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| BspACI | CCGC | 9 cut(s) | 74, 109, 283, 387, 502, 520, 553, 566, 616 |
| BspANI | GGCC | 4 cut(s) | 108, 197, 266, 594 |
| BspEI | TCCGGA | 1 cut(s) | 729 |
| BspFNI | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| BspLI | GGNNCC | 4 cut(s) | 442, 608, 723, 734 |
| BspPI | GGATC | 6 cut(s) | 196, 518, 601, 614, 727, 740 |
| BspT104I | TTCGAA | 1 cut(s) | 644 |
| BspT107I | GGYRCC | 1 cut(s) | 440 |
| BspTI | CTTAAG | 1 cut(s) | 548 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 367 |
| BsrFI | RCCGGY | 3 cut(s) | 285, 594, 712 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssAI | RCCGGY | 3 cut(s) | 285, 594, 712 |
| BssECI | CCNNGG | 3 cut(s) | 64, 332, 436 |
| BssHII | GCGCGC | 2 cut(s) | 90, 92 |
| BssMI | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| BssNI | GRCGYC | 1 cut(s) | 230 |
| BssSI | CACGAG | 1 cut(s) | 752 |
| Bst2BI | CACGAG | 1 cut(s) | 752 |
| BstACI | GRCGYC | 1 cut(s) | 230 |
| BstAFI | CTTAAG | 1 cut(s) | 548 |
| BstBI | TTCGAA | 1 cut(s) | 644 |
| BstDEI | CTNAG | 1 cut(s) | 143 |
| BstDSI | CCRYGG | 1 cut(s) | 332 |
| BstF5I | GGATG | 6 cut(s) | 342, 408, 455, 682, 763, 787 |
| BstFNI | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| BstH2I | RGCGCY | 2 cut(s) | 659, 798 |
| BstHHI | GCGC | 6 cut(s) | 92, 94, 96, 257, 658, 797 |
| BstKTI | GATC | 5 cut(s) | 88, 204, 526, 609, 735 |
| BstMAI | GTCTC | 2 cut(s) | 547, 624 |
| BstMBI | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 98, 194, 263, 528 |
| BstSCI | CCNGG | 4 cut(s) | 64, 232, 311, 723 |
| BstUI | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| BstV1I | GCAGC | 1 cut(s) | 680 |
| BstV2I | GAAGAC | 1 cut(s) | 578 |
| BstX2I | RGATCY | 2 cut(s) | 606, 732 |
| BstYI | RGATCY | 2 cut(s) | 606, 732 |
| BsuRI | GGCC | 4 cut(s) | 108, 197, 266, 594 |
| BtgI | CCRYGG | 1 cut(s) | 332 |
| BtrI | CACGTC | 1 cut(s) | 541 |
| BtsCI | GGATG | 6 cut(s) | 342, 408, 455, 682, 763, 787 |
| CfoI | GCGC | 6 cut(s) | 92, 94, 96, 257, 658, 797 |
| Cfr10I | RCCGGY | 3 cut(s) | 285, 594, 712 |
| Cfr13I | GGNCC | 3 cut(s) | 265, 721, 727 |
| CpoI | CGGWCCG | 1 cut(s) | 727 |
| CseI | GACGC | 1 cut(s) | 238 |
| Csp6I | GTAC | 1 cut(s) | 212 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 578, 613 |
| CspI | CGGWCCG | 1 cut(s) | 727 |
| CviQI | GTAC | 1 cut(s) | 212 |
| DdeI | CTNAG | 1 cut(s) | 143 |
| DpnI | GATC | 5 cut(s) | 87, 203, 525, 608, 734 |
| DpnII | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| EaeI | YGGCCR | 1 cut(s) | 106 |
| EciI | GGCGGA | 3 cut(s) | 272, 491, 605 |
| Ecl136II | GAGCTC | 2 cut(s) | 150, 411 |
| Eco24I | GRGCYC | 4 cut(s) | 152, 413, 537, 574 |
| Eco47I | GGWCC | 2 cut(s) | 721, 727 |
| Eco47III | AGCGCT | 1 cut(s) | 657 |
| Eco53kI | GAGCTC | 2 cut(s) | 150, 411 |
| EcoICRI | GAGCTC | 2 cut(s) | 150, 411 |
| EcoT22I | ATGCAT | 1 cut(s) | 787 |
| EcoT38I | GRGCYC | 4 cut(s) | 152, 413, 537, 574 |
| Esp3I | CGTCTC | 2 cut(s) | 547, 624 |
| FaiI | YATR | 4 cut(s) | 81, 158, 242, 356 |
| FaqI | GGGAC | 2 cut(s) | 290, 707 |
| FauI | CCCGC | 1 cut(s) | 81 |
| Fnu4HI | GCNGC | 2 cut(s) | 109, 669 |
| FokI | GGATG | 6 cut(s) | 349, 415, 462, 669, 770, 794 |
| FriOI | GRGCYC | 4 cut(s) | 152, 413, 537, 574 |
| Fsp4HI | GCNGC | 2 cut(s) | 109, 669 |
| FspBI | CTAG | 2 cut(s) | 47, 737 |
| GlaI | GCGC | 6 cut(s) | 91, 93, 95, 256, 657, 796 |
| GluI | GCNGC | 2 cut(s) | 109, 669 |
| HaeII | RGCGCY | 2 cut(s) | 659, 798 |
| HaeIII | GGCC | 4 cut(s) | 108, 197, 266, 594 |
| HgaI | GACGC | 1 cut(s) | 238 |
| HhaI | GCGC | 6 cut(s) | 92, 94, 96, 257, 658, 797 |
| Hin1I | GRCGYC | 1 cut(s) | 230 |
| Hin6I | GCGC | 6 cut(s) | 90, 92, 94, 255, 656, 795 |
| HinP1I | GCGC | 6 cut(s) | 90, 92, 94, 255, 656, 795 |
| HincII | GTYRAC | 1 cut(s) | 384 |
| HindII | GTYRAC | 1 cut(s) | 384 |
| HinfI | GANTC | 1 cut(s) | 33 |
| HphI | GGTGA | 1 cut(s) | 30 |
| Hpy166II | GTNNAC | 2 cut(s) | 368, 384 |
| Hpy188I | TCNGA | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 5 cut(s) | 275, 430, 481, 579, 730 |
| Hpy8I | GTNNAC | 2 cut(s) | 368, 384 |
| Hpy99I | CGWCG | 1 cut(s) | 232 |
| HpyAV | CCTTC | 2 cut(s) | 597, 620 |
| HpyCH4IV | ACGT | 2 cut(s) | 540, 633 |
| HpyCH4V | TGCA | 2 cut(s) | 668, 785 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 98, 194, 263, 528 |
| HpyF3I | CTNAG | 1 cut(s) | 143 |
| HpySE526I | ACGT | 2 cut(s) | 540, 633 |
| Hsp92I | GRCGYC | 1 cut(s) | 230 |
| HspAI | GCGC | 6 cut(s) | 90, 92, 94, 255, 656, 795 |
| Kpn2I | TCCGGA | 1 cut(s) | 729 |
| KroI | GCCGGC | 1 cut(s) | 285 |
| KroNI | GCCGGC | 1 cut(s) | 287 |
| Kzo9I | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| LmnI | GCTCC | 2 cut(s) | 147, 490 |
| Lsp1109I | GCAGC | 1 cut(s) | 680 |
| LweI | GCATC | 3 cut(s) | 440, 772, 794 |
| MaeI | CTAG | 2 cut(s) | 47, 737 |
| MaeII | ACGT | 2 cut(s) | 540, 633 |
| MalI | GATC | 5 cut(s) | 87, 203, 525, 608, 734 |
| MauBI | CGCGCGCG | 1 cut(s) | 90 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| MboII | GAAGA | 7 cut(s) | 39, 42, 295, 361, 496, 578, 773 |
| MflI | RGATCY | 2 cut(s) | 606, 732 |
| MhlI | GDGCHC | 5 cut(s) | 152, 413, 495, 537, 574 |
| MluCI | AATT | 4 cut(s) | 237, 260, 461, 556 |
| MmeI | TCCRAC | 1 cut(s) | 604 |
| Mph1103I | ATGCAT | 1 cut(s) | 787 |
| MroI | TCCGGA | 1 cut(s) | 729 |
| MroNI | GCCGGC | 1 cut(s) | 285 |
| MseI | TTAA | 1 cut(s) | 549 |
| MslI | CAYNNNNRTG | 1 cut(s) | 756 |
| MspCI | CTTAAG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 4 cut(s) | 66, 234, 313, 725 |
| MvnI | CGCG | 7 cut(s) | 90, 92, 94, 257, 522, 531, 568 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 98, 194, 263, 528 |
| NaeI | GCCGGC | 1 cut(s) | 287 |
| NciI | CCSGG | 4 cut(s) | 66, 234, 313, 725 |
| NdeII | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| NgoMIV | GCCGGC | 1 cut(s) | 285 |
| NlaIV | GGNNCC | 4 cut(s) | 442, 608, 723, 734 |
| NsiI | ATGCAT | 1 cut(s) | 787 |
| NspV | TTCGAA | 1 cut(s) | 644 |
| PauI | GCGCGC | 2 cut(s) | 90, 92 |
| PdiI | GCCGGC | 1 cut(s) | 287 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PkrI | GCNGC | 2 cut(s) | 110, 670 |
| PsiI | TTATAA | 1 cut(s) | 242 |
| Psp124BI | GAGCTC | 2 cut(s) | 152, 413 |
| PspN4I | GGNNCC | 4 cut(s) | 442, 608, 723, 734 |
| PspPI | GGNCC | 3 cut(s) | 265, 721, 727 |
| PsuI | RGATCY | 2 cut(s) | 606, 732 |
| PteI | GCGCGC | 2 cut(s) | 90, 92 |
| RsaI | GTAC | 1 cut(s) | 213 |
| RsaNI | GTAC | 1 cut(s) | 212 |
| RseI | CAYNNNNRTG | 1 cut(s) | 756 |
| Rsr2I | CGGWCCG | 1 cut(s) | 727 |
| RsrII | CGGWCCG | 1 cut(s) | 727 |
| SacI | GAGCTC | 2 cut(s) | 152, 413 |
| SaqAI | TTAA | 1 cut(s) | 549 |
| SatI | GCNGC | 2 cut(s) | 109, 669 |
| Sau3AI | GATC | 5 cut(s) | 85, 201, 523, 606, 732 |
| Sau96I | GGNCC | 3 cut(s) | 265, 721, 727 |
| ScrFI | CCNGG | 4 cut(s) | 66, 234, 313, 725 |
| SduI | GDGCHC | 5 cut(s) | 152, 413, 495, 537, 574 |
| SfaNI | GCATC | 3 cut(s) | 440, 772, 794 |
| SfuI | TTCGAA | 1 cut(s) | 644 |
| SinI | GGWCC | 2 cut(s) | 721, 727 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 756 |
| SmlI | CTYRAG | 2 cut(s) | 548, 577 |
| SmoI | CTYRAG | 2 cut(s) | 548, 577 |
| Sse9I | AATT | 4 cut(s) | 237, 260, 461, 556 |
| SsiI | CCGC | 9 cut(s) | 74, 109, 283, 387, 502, 520, 553, 566, 616 |
| SspMI | CTAG | 2 cut(s) | 47, 737 |
| SstI | GAGCTC | 2 cut(s) | 152, 413 |
| StyD4I | CCNGG | 4 cut(s) | 64, 232, 311, 723 |
| TaiI | ACGT | 2 cut(s) | 543, 636 |
| TaqI | TCGA | 4 cut(s) | 113, 200, 472, 644 |
| TaqII | GACCGA | 1 cut(s) | 285 |
| TasI | AATT | 4 cut(s) | 237, 260, 461, 556 |
| TauI | GCSGC | 1 cut(s) | 111 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| Tru1I | TTAA | 1 cut(s) | 549 |
| Tru9I | TTAA | 1 cut(s) | 549 |
| TseI | GCWGC | 1 cut(s) | 668 |
| TspDTI | ATGAA | 2 cut(s) | 173, 774 |
| Vha464I | CTTAAG | 1 cut(s) | 548 |
| VpaK11BI | GGWCC | 2 cut(s) | 721, 727 |
| XspI | CTAG | 2 cut(s) | 47, 737 |
| Zsp2I | ATGCAT | 1 cut(s) | 787 |