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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1214 |
| AccI | GTMKAC | 1 cut(s) | 835 |
| AclWI | GGATC | 4 cut(s) | 175, 222, 235, 443 |
| AcoI | YGGCCR | 1 cut(s) | 939 |
| AcuI | CTGAAG | 4 cut(s) | 32, 443, 506, 560 |
| AfaI | GTAC | 4 cut(s) | 339, 651, 789, 1027 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 131, 164, 659, 682 |
| AgsI | TTSAA | 6 cut(s) | 94, 347, 443, 560, 794, 1088 |
| AjnI | CCWGG | 8 cut(s) | 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1242, 1274 |
| Alw21I | GWGCWC | 2 cut(s) | 101, 482 |
| Alw26I | GTCTC | 2 cut(s) | 45, 1176 |
| AlwI | GGATC | 4 cut(s) | 175, 222, 235, 443 |
| Ama87I | CYCGRG | 2 cut(s) | 549, 716 |
| AoxI | GGCC | 5 cut(s) | 939, 948, 1182, 1200, 1276 |
| ApeKI | GCWGC | 2 cut(s) | 311, 734 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 61, 93, 982, 1014 |
| AscI | GGCGCGCC | 1 cut(s) | 873 |
| AspLEI | GCGC | 7 cut(s) | 251, 608, 757, 875, 877, 946, 1168 |
| AspS9I | GGNCC | 6 cut(s) | 128, 204, 446, 851, 1183, 1201 |
| AsuC2I | CCSGG | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 424 |
| AsuNHI | GCTAGC | 1 cut(s) | 778 |
| AvaI | CYCGRG | 2 cut(s) | 549, 716 |
| AvaII | GGWCC | 4 cut(s) | 128, 204, 446, 851 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BamHI | GGATCC | 1 cut(s) | 227 |
| BanII | GRGCYC | 3 cut(s) | 101, 157, 482 |
| Bbv12I | GWGCWC | 2 cut(s) | 101, 482 |
| BbvCI | CCTCAGC | 1 cut(s) | 232 |
| BbvI | GCAGC | 2 cut(s) | 298, 721 |
| BccI | CCATC | 5 cut(s) | 94, 311, 596, 638, 1068 |
| BceAI | ACGGC | 2 cut(s) | 948, 954 |
| BciT130I | CCWGG | 8 cut(s) | 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| BciVI | GTATCC | 1 cut(s) | 10 |
| BcnI | CCSGG | 1 cut(s) | 126 |
| BcoDI | GTCTC | 2 cut(s) | 45, 1176 |
| BfaI | CTAG | 4 cut(s) | 219, 335, 779, 825 |
| BfoI | RGCGCY | 1 cut(s) | 1169 |
| BfuI | GTATCC | 1 cut(s) | 10 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 947, 1217 |
| BglII | AGATCT | 1 cut(s) | 1081 |
| BisI | GCNGC | 6 cut(s) | 312, 735, 749, 942, 1155, 1212 |
| BlsI | GCNGC | 6 cut(s) | 313, 736, 750, 943, 1156, 1213 |
| Bme1390I | CCNGG | 9 cut(s) | 126, 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| Bme18I | GGWCC | 4 cut(s) | 128, 204, 446, 851 |
| BmeT110I | CYCGRG | 2 cut(s) | 549, 716 |
| BmgT120I | GGNCC | 6 cut(s) | 128, 204, 446, 851, 1183, 1201 |
| BmiI | GGNNCC | 7 cut(s) | 229, 273, 699, 711, 852, 853, 1058 |
| BmrFI | CCNGG | 9 cut(s) | 126, 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| BmrI | ACTGGG | 1 cut(s) | 1087 |
| BmsI | GCATC | 4 cut(s) | 628, 855, 1065, 1219 |
| BmtI | GCTAGC | 1 cut(s) | 782 |
| BmuI | ACTGGG | 1 cut(s) | 1087 |
| BpmI | CTGGAG | 3 cut(s) | 828, 1160, 1217 |
| Bpu10I | CCTNAGC | 3 cut(s) | 232, 678, 1215 |
| BpuEI | CTTGAG | 3 cut(s) | 145, 1049, 1158 |
| BpuMI | CCSGG | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 3 cut(s) | 267, 1021, 1279 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 654, 684, 1242, 1272 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 131, 164, 659, 682 |
| Bse118I | RCCGGY | 1 cut(s) | 682 |
| Bse1I | ACTGG | 5 cut(s) | 341, 774, 1093, 1143, 1185 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| BseBI | CCWGG | 8 cut(s) | 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| BseDI | CCNNGG | 3 cut(s) | 267, 1021, 1279 |
| BseGI | GGATG | 3 cut(s) | 303, 630, 1252 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 131, 164, 659, 682 |
| BseMII | CTCAG | 5 cut(s) | 246, 360, 669, 890, 1229 |
| BseNI | ACTGG | 5 cut(s) | 341, 774, 1093, 1143, 1185 |
| BsePI | GCGCGC | 1 cut(s) | 873 |
| BseRI | GAGGAG | 4 cut(s) | 171, 386, 490, 792 |
| BseX3I | CGGCCG | 1 cut(s) | 939 |
| BseXI | GCAGC | 2 cut(s) | 298, 721 |
| BseYI | CCCAGC | 2 cut(s) | 53, 135 |
| Bsh1285I | CGRYCG | 2 cut(s) | 511, 942 |
| BshFI | GGCC | 5 cut(s) | 941, 950, 1184, 1202, 1278 |
| BsiEI | CGRYCG | 2 cut(s) | 511, 942 |
| BsiHKAI | GWGCWC | 2 cut(s) | 101, 482 |
| BsiHKCI | CYCGRG | 2 cut(s) | 549, 716 |
| BsiSI | CCGG | 2 cut(s) | 126, 683 |
| BslFI | GGGAC | 3 cut(s) | 71, 79, 864 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 131, 164, 659, 682 |
| BsmAI | GTCTC | 2 cut(s) | 45, 1176 |
| BsmFI | GGGAC | 3 cut(s) | 71, 79, 864 |
| BsnI | GGCC | 5 cut(s) | 941, 950, 1184, 1202, 1278 |
| BsoBI | CYCGRG | 2 cut(s) | 549, 716 |
| Bsp1286I | GDGCHC | 3 cut(s) | 101, 157, 482 |
| Bsp143I | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| Bsp68I | TCGCGA | 3 cut(s) | 82, 151, 1003 |
| BspANI | GGCC | 5 cut(s) | 941, 950, 1184, 1202, 1278 |
| BspCNI | CTCAG | 5 cut(s) | 245, 361, 670, 891, 1228 |
| BspLI | GGNNCC | 7 cut(s) | 229, 273, 699, 711, 852, 853, 1058 |
| BspOI | GCTAGC | 1 cut(s) | 782 |
| BspPI | GGATC | 4 cut(s) | 175, 222, 235, 443 |
| BsrBI | CCGCTC | 1 cut(s) | 1214 |
| BsrFI | RCCGGY | 1 cut(s) | 682 |
| BsrI | ACTGG | 5 cut(s) | 341, 774, 1093, 1143, 1185 |
| BssAI | RCCGGY | 1 cut(s) | 682 |
| BssECI | CCNNGG | 3 cut(s) | 267, 1021, 1279 |
| BssHII | GCGCGC | 1 cut(s) | 873 |
| BssMI | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| BssT1I | CCWWGG | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 8 cut(s) | 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| Bst4CI | ACNGT | 1 cut(s) | 1102 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 6 cut(s) | 232, 369, 678, 899, 1012, 1215 |
| BstEII | GGTNACC | 1 cut(s) | 1016 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 657 |
| BstF5I | GGATG | 3 cut(s) | 303, 630, 1252 |
| BstH2I | RGCGCY | 1 cut(s) | 1169 |
| BstHHI | GCGC | 7 cut(s) | 251, 608, 757, 875, 877, 946, 1168 |
| BstKTI | GATC | 6 cut(s) | 170, 230, 394, 438, 511, 1084 |
| BstMAI | GTCTC | 2 cut(s) | 45, 1176 |
| BstMBI | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| BstMCI | CGRYCG | 2 cut(s) | 511, 942 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 263, 754, 874, 941, 947, 952, 1163, 1208, 1217 |
| BstNI | CCWGG | 8 cut(s) | 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| BstNSI | RCATGY | 1 cut(s) | 755 |
| BstPI | GGTNACC | 1 cut(s) | 1016 |
| BstSCI | CCNGG | 9 cut(s) | 124, 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| BstV1I | GCAGC | 2 cut(s) | 298, 721 |
| BstX2I | RGATCY | 2 cut(s) | 227, 1081 |
| BstYI | RGATCY | 2 cut(s) | 227, 1081 |
| BstZI | CGGCCG | 1 cut(s) | 939 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BsuI | GTATCC | 1 cut(s) | 10 |
| BsuRI | GGCC | 5 cut(s) | 941, 950, 1184, 1202, 1278 |
| BtsCI | GGATG | 3 cut(s) | 303, 630, 1252 |
| BtsIMutI | CAGTG | 2 cut(s) | 8, 534 |
| BtuMI | TCGCGA | 3 cut(s) | 82, 151, 1003 |
| CfoI | GCGC | 7 cut(s) | 251, 608, 757, 875, 877, 946, 1168 |
| Cfr10I | RCCGGY | 1 cut(s) | 682 |
| Cfr13I | GGNCC | 6 cut(s) | 128, 204, 446, 851, 1183, 1201 |
| CseI | GACGC | 4 cut(s) | 240, 620, 830, 1054 |
| CsiI | ACCWGGT | 1 cut(s) | 448 |
| Csp6I | GTAC | 4 cut(s) | 338, 650, 788, 1026 |
| CviAII | CATG | 3 cut(s) | 752, 1124, 1187 |
| CviQI | GTAC | 4 cut(s) | 338, 650, 788, 1026 |
| DdeI | CTNAG | 6 cut(s) | 232, 369, 678, 899, 1012, 1215 |
| DpnI | GATC | 6 cut(s) | 169, 229, 393, 437, 510, 1083 |
| DpnII | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| EaeI | YGGCCR | 1 cut(s) | 939 |
| EagI | CGGCCG | 1 cut(s) | 939 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| EciI | GGCGGA | 2 cut(s) | 735, 1250 |
| Ecl136II | GAGCTC | 2 cut(s) | 99, 480 |
| EclXI | CGGCCG | 1 cut(s) | 939 |
| Eco130I | CCWWGG | 1 cut(s) | 267 |
| Eco24I | GRGCYC | 3 cut(s) | 101, 157, 482 |
| Eco32I | GATATC | 1 cut(s) | 859 |
| Eco47I | GGWCC | 4 cut(s) | 128, 204, 446, 851 |
| Eco52I | CGGCCG | 1 cut(s) | 939 |
| Eco53kI | GAGCTC | 2 cut(s) | 99, 480 |
| Eco57I | CTGAAG | 4 cut(s) | 32, 443, 506, 560 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| Eco88I | CYCGRG | 2 cut(s) | 549, 716 |
| Eco91I | GGTNACC | 1 cut(s) | 1016 |
| EcoICRI | GAGCTC | 2 cut(s) | 99, 480 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 657 |
| EcoO109I | RGGNCCY | 2 cut(s) | 204, 851 |
| EcoO65I | GGTNACC | 1 cut(s) | 1016 |
| EcoRII | CCWGG | 8 cut(s) | 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| EcoRV | GATATC | 1 cut(s) | 859 |
| EcoT14I | CCWWGG | 1 cut(s) | 267 |
| EcoT38I | GRGCYC | 3 cut(s) | 101, 157, 482 |
| ErhI | CCWWGG | 1 cut(s) | 267 |
| FaeI | CATG | 3 cut(s) | 755, 1127, 1190 |
| FaiI | YATR | 8 cut(s) | 174, 323, 353, 753, 815, 1125, 1188, 1272 |
| FaqI | GGGAC | 3 cut(s) | 71, 79, 864 |
| FatI | CATG | 3 cut(s) | 751, 1123, 1186 |
| FauI | CCCGC | 2 cut(s) | 116, 886 |
| FblI | GTMKAC | 1 cut(s) | 835 |
| Fnu4HI | GCNGC | 6 cut(s) | 312, 735, 749, 942, 1155, 1212 |
| FokI | GGATG | 3 cut(s) | 290, 617, 1259 |
| FriOI | GRGCYC | 3 cut(s) | 101, 157, 482 |
| Fsp4HI | GCNGC | 6 cut(s) | 312, 735, 749, 942, 1155, 1212 |
| FspBI | CTAG | 4 cut(s) | 219, 335, 779, 825 |
| GlaI | GCGC | 7 cut(s) | 250, 607, 756, 874, 876, 945, 1167 |
| GluI | GCNGC | 6 cut(s) | 312, 735, 749, 942, 1155, 1212 |
| GsaI | CCCAGC | 2 cut(s) | 57, 139 |
| GsuI | CTGGAG | 3 cut(s) | 828, 1160, 1217 |
| HaeII | RGCGCY | 1 cut(s) | 1169 |
| HaeIII | GGCC | 5 cut(s) | 941, 950, 1184, 1202, 1278 |
| HapII | CCGG | 2 cut(s) | 126, 683 |
| HgaI | GACGC | 4 cut(s) | 240, 620, 830, 1054 |
| HhaI | GCGC | 7 cut(s) | 251, 608, 757, 875, 877, 946, 1168 |
| Hin1II | CATG | 3 cut(s) | 755, 1127, 1190 |
| Hin6I | GCGC | 7 cut(s) | 249, 606, 755, 873, 875, 944, 1166 |
| HinP1I | GCGC | 7 cut(s) | 249, 606, 755, 873, 875, 944, 1166 |
| HincII | GTYRAC | 1 cut(s) | 1098 |
| HindII | GTYRAC | 1 cut(s) | 1098 |
| HinfI | GANTC | 2 cut(s) | 799, 904 |
| HpaI | GTTAAC | 1 cut(s) | 1098 |
| HpaII | CCGG | 2 cut(s) | 126, 683 |
| HphI | GGTGA | 2 cut(s) | 254, 424 |
| Hpy166II | GTNNAC | 3 cut(s) | 673, 836, 1098 |
| Hpy188I | TCNGA | 4 cut(s) | 36, 435, 474, 900 |
| Hpy8I | GTNNAC | 3 cut(s) | 673, 836, 1098 |
| Hpy99I | CGWCG | 2 cut(s) | 73, 201 |
| HpyCH4III | ACNGT | 1 cut(s) | 1102 |
| HpyCH4IV | ACGT | 1 cut(s) | 838 |
| HpyCH4V | TGCA | 4 cut(s) | 314, 325, 1078, 1274 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 263, 754, 874, 941, 947, 952, 1163, 1208, 1217 |
| HpyF3I | CTNAG | 6 cut(s) | 232, 369, 678, 899, 1012, 1215 |
| HpySE526I | ACGT | 1 cut(s) | 838 |
| Hsp92II | CATG | 3 cut(s) | 755, 1127, 1190 |
| HspAI | GCGC | 7 cut(s) | 249, 606, 755, 873, 875, 944, 1166 |
| KflI | GGGWCCC | 1 cut(s) | 851 |
| KspAI | GTTAAC | 1 cut(s) | 1098 |
| Kzo9I | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| LmnI | GCTCC | 5 cut(s) | 271, 418, 477, 709, 1141 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 721 |
| LweI | GCATC | 4 cut(s) | 628, 855, 1065, 1219 |
| MabI | ACCWGGT | 1 cut(s) | 448 |
| MaeI | CTAG | 4 cut(s) | 219, 335, 779, 825 |
| MaeII | ACGT | 1 cut(s) | 838 |
| MaeIII | GTNAC | 3 cut(s) | 796, 1016, 1105 |
| MalI | GATC | 6 cut(s) | 169, 229, 393, 437, 510, 1083 |
| MbiI | CCGCTC | 1 cut(s) | 1214 |
| MboI | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| MboII | GAAGA | 2 cut(s) | 69, 1076 |
| MfeI | CAATTG | 1 cut(s) | 276 |
| MflI | RGATCY | 2 cut(s) | 227, 1081 |
| MhlI | GDGCHC | 3 cut(s) | 101, 157, 482 |
| MluCI | AATT | 2 cut(s) | 145, 276 |
| MlyI | GAGTC | 1 cut(s) | 793 |
| MmeI | TCCRAC | 3 cut(s) | 439, 452, 556 |
| MseI | TTAA | 1 cut(s) | 1097 |
| MspA1I | CMGCKG | 1 cut(s) | 236 |
| MspI | CCGG | 2 cut(s) | 126, 683 |
| MspR9I | CCNGG | 9 cut(s) | 126, 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| MunI | CAATTG | 1 cut(s) | 276 |
| MvaI | CCWGG | 8 cut(s) | 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 263, 754, 874, 941, 947, 952, 1163, 1208, 1217 |
| NciI | CCSGG | 1 cut(s) | 126 |
| NdeII | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| NheI | GCTAGC | 1 cut(s) | 778 |
| NlaIII | CATG | 3 cut(s) | 755, 1127, 1190 |
| NlaIV | GGNNCC | 7 cut(s) | 229, 273, 699, 711, 852, 853, 1058 |
| NmuCI | GTSAC | 1 cut(s) | 796 |
| NruI | TCGCGA | 3 cut(s) | 82, 151, 1003 |
| NspI | RCATGY | 1 cut(s) | 755 |
| PaeI | GCATGC | 1 cut(s) | 755 |
| PaeR7I | CTCGAG | 1 cut(s) | 716 |
| PalAI | GGCGCGCC | 1 cut(s) | 873 |
| PauI | GCGCGC | 1 cut(s) | 873 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 595 |
| PfeI | GAWTC | 1 cut(s) | 904 |
| PflFI | GACNNNGTC | 2 cut(s) | 450, 567 |
| PfoI | TCCNGGA | 1 cut(s) | 805 |
| PkrI | GCNGC | 6 cut(s) | 313, 736, 750, 943, 1156, 1213 |
| Ple19I | CGATCG | 1 cut(s) | 511 |
| PleI | GAGTC | 1 cut(s) | 793 |
| PpsI | GAGTC | 1 cut(s) | 793 |
| PpuMI | RGGWCCY | 2 cut(s) | 204, 851 |
| Psp124BI | GAGCTC | 2 cut(s) | 101, 482 |
| Psp5II | RGGWCCY | 2 cut(s) | 204, 851 |
| Psp6I | CCWGG | 8 cut(s) | 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| PspEI | GGTNACC | 1 cut(s) | 1016 |
| PspFI | CCCAGC | 2 cut(s) | 53, 135 |
| PspGI | CCWGG | 8 cut(s) | 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| PspN4I | GGNNCC | 7 cut(s) | 229, 273, 699, 711, 852, 853, 1058 |
| PspPI | GGNCC | 6 cut(s) | 128, 204, 446, 851, 1183, 1201 |
| PspPPI | RGGWCCY | 2 cut(s) | 204, 851 |
| PsuI | RGATCY | 2 cut(s) | 227, 1081 |
| PsyI | GACNNNGTC | 2 cut(s) | 450, 567 |
| PteI | GCGCGC | 1 cut(s) | 873 |
| PvuI | CGATCG | 1 cut(s) | 511 |
| PvuII | CAGCTG | 1 cut(s) | 236 |
| RruI | TCGCGA | 3 cut(s) | 82, 151, 1003 |
| RsaI | GTAC | 4 cut(s) | 339, 651, 789, 1027 |
| RsaNI | GTAC | 4 cut(s) | 338, 650, 788, 1026 |
| SacI | GAGCTC | 2 cut(s) | 101, 482 |
| SaqAI | TTAA | 1 cut(s) | 1097 |
| SatI | GCNGC | 6 cut(s) | 312, 735, 749, 942, 1155, 1212 |
| Sau3AI | GATC | 6 cut(s) | 167, 227, 391, 435, 508, 1081 |
| Sau96I | GGNCC | 6 cut(s) | 128, 204, 446, 851, 1183, 1201 |
| SchI | GAGTC | 1 cut(s) | 793 |
| ScrFI | CCNGG | 9 cut(s) | 126, 132, 450, 807, 870, 952, 1022, 1114, 1196 |
| SduI | GDGCHC | 3 cut(s) | 101, 157, 482 |
| SexAI | ACCWGGT | 1 cut(s) | 448 |
| SfaNI | GCATC | 4 cut(s) | 628, 855, 1065, 1219 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 947 |
| Sfr274I | CTCGAG | 1 cut(s) | 716 |
| SgsI | GGCGCGCC | 1 cut(s) | 873 |
| SinI | GGWCC | 4 cut(s) | 128, 204, 446, 851 |
| SlaI | CTCGAG | 1 cut(s) | 716 |
| SmlI | CTYRAG | 4 cut(s) | 160, 716, 1064, 1173 |
| SmoI | CTYRAG | 4 cut(s) | 160, 716, 1064, 1173 |
| SphI | GCATGC | 1 cut(s) | 755 |
| Sse9I | AATT | 2 cut(s) | 145, 276 |
| SspMI | CTAG | 4 cut(s) | 219, 335, 779, 825 |
| SstI | GAGCTC | 2 cut(s) | 101, 482 |
| StyD4I | CCNGG | 9 cut(s) | 124, 130, 448, 805, 868, 950, 1020, 1112, 1194 |
| StyI | CCWWGG | 1 cut(s) | 267 |
| TaaI | ACNGT | 1 cut(s) | 1102 |
| TaiI | ACGT | 1 cut(s) | 841 |
| TaqI | TCGA | 5 cut(s) | 390, 507, 511, 717, 1161 |
| TasI | AATT | 2 cut(s) | 145, 276 |
| TauI | GCSGC | 4 cut(s) | 751, 944, 1157, 1214 |
| TfiI | GAWTC | 1 cut(s) | 904 |
| Tru1I | TTAA | 1 cut(s) | 1097 |
| Tru9I | TTAA | 1 cut(s) | 1097 |
| TscAI | CASTG | 2 cut(s) | 15, 534 |
| TseFI | GTSAC | 1 cut(s) | 796 |
| TseI | GCWGC | 2 cut(s) | 311, 734 |
| Tsp45I | GTSAC | 1 cut(s) | 796 |
| TspDTI | ATGAA | 2 cut(s) | 681, 1263 |
| TspGWI | ACGGA | 2 cut(s) | 296, 1007 |
| TspRI | CASTG | 2 cut(s) | 15, 534 |
| Tth111I | GACNNNGTC | 2 cut(s) | 450, 567 |
| VpaK11BI | GGWCC | 4 cut(s) | 128, 204, 446, 851 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 657 |
| XceI | RCATGY | 1 cut(s) | 755 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1240 |
| XhoI | CTCGAG | 1 cut(s) | 716 |
| XmiI | GTMKAC | 1 cut(s) | 835 |
| XspI | CTAG | 4 cut(s) | 219, 335, 779, 825 |