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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 171 |
| Acc36I | ACCTGC | 1 cut(s) | 171 |
| AccB1I | GGYRCC | 2 cut(s) | 82, 265 |
| AccI | GTMKAC | 1 cut(s) | 217 |
| AccII | CGCG | 1 cut(s) | 337 |
| AciI | CCGC | 2 cut(s) | 87, 206 |
| AclWI | GGATC | 1 cut(s) | 164 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 66, 237 |
| AgsI | TTSAA | 1 cut(s) | 256 |
| AleI | CACNNNNGTG | 1 cut(s) | 263 |
| AluBI | AGCT | 1 cut(s) | 348 |
| AluI | AGCT | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 100 |
| AlwI | GGATC | 1 cut(s) | 164 |
| Ama87I | CYCGRG | 1 cut(s) | 245 |
| AoxI | GGCC | 4 cut(s) | 156, 202, 228, 297 |
| ApaI | GGGCCC | 1 cut(s) | 160 |
| AspS9I | GGNCC | 5 cut(s) | 151, 156, 157, 203, 229 |
| AsuC2I | CCSGG | 4 cut(s) | 155, 246, 247, 262 |
| AvaI | CYCGRG | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| BaeGI | GKGCMC | 3 cut(s) | 87, 160, 270 |
| BalI | TGGCCA | 1 cut(s) | 299 |
| BanI | GGYRCC | 2 cut(s) | 82, 265 |
| BanII | GRGCYC | 1 cut(s) | 160 |
| BauI | CACGAG | 1 cut(s) | 343 |
| BccI | CCATC | 2 cut(s) | 197, 308 |
| BcnI | CCSGG | 4 cut(s) | 155, 246, 247, 262 |
| BcoDI | GTCTC | 1 cut(s) | 100 |
| BfaI | CTAG | 1 cut(s) | 349 |
| BfuAI | ACCTGC | 1 cut(s) | 171 |
| Bme1390I | CCNGG | 4 cut(s) | 155, 246, 247, 262 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmeT110I | CYCGRG | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 5 cut(s) | 151, 156, 157, 203, 229 |
| BmiI | GGNNCC | 5 cut(s) | 6, 72, 84, 158, 267 |
| BmrFI | CCNGG | 4 cut(s) | 155, 246, 247, 262 |
| BpuMI | CCSGG | 4 cut(s) | 155, 246, 247, 262 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 3 cut(s) | 245, 246, 261 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 107, 137 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 66, 237 |
| Bse3DI | GCAATG | 1 cut(s) | 300 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 3 cut(s) | 245, 246, 261 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 66, 237 |
| BseMI | GCAATG | 1 cut(s) | 300 |
| BseRI | GAGGAG | 1 cut(s) | 115 |
| BseSI | GKGCMC | 3 cut(s) | 87, 160, 270 |
| Bsh1236I | CGCG | 1 cut(s) | 337 |
| BshFI | GGCC | 4 cut(s) | 158, 204, 230, 299 |
| BshNI | GGYRCC | 2 cut(s) | 82, 265 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiHKCI | CYCGRG | 1 cut(s) | 245 |
| BsiSI | CCGG | 6 cut(s) | 149, 154, 227, 246, 261, 329 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 66, 237 |
| BsmAI | GTCTC | 1 cut(s) | 100 |
| BsmBI | CGTCTC | 1 cut(s) | 100 |
| BsmI | GAATGC | 1 cut(s) | 89 |
| BsnI | GGCC | 4 cut(s) | 158, 204, 230, 299 |
| BsoBI | CYCGRG | 1 cut(s) | 245 |
| Bsp120I | GGGCCC | 1 cut(s) | 156 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 160, 270 |
| Bsp143I | GATC | 2 cut(s) | 28, 169 |
| Bsp68I | TCGCGA | 1 cut(s) | 337 |
| BspACI | CCGC | 2 cut(s) | 87, 206 |
| BspANI | GGCC | 4 cut(s) | 158, 204, 230, 299 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 1 cut(s) | 337 |
| BspLI | GGNNCC | 5 cut(s) | 6, 72, 84, 158, 267 |
| BspMI | ACCTGC | 1 cut(s) | 171 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BspT107I | GGYRCC | 2 cut(s) | 82, 265 |
| BsrDI | GCAATG | 1 cut(s) | 300 |
| BssECI | CCNNGG | 3 cut(s) | 245, 246, 261 |
| BssMI | GATC | 2 cut(s) | 28, 169 |
| BssSI | CACGAG | 1 cut(s) | 343 |
| Bst2BI | CACGAG | 1 cut(s) | 343 |
| Bst4CI | ACNGT | 1 cut(s) | 54 |
| Bst6I | CTCTTC | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 2 cut(s) | 87, 206 |
| BstDEI | CTNAG | 1 cut(s) | 65 |
| BstFNI | CGCG | 1 cut(s) | 337 |
| BstKTI | GATC | 2 cut(s) | 31, 172 |
| BstMAI | GTCTC | 1 cut(s) | 100 |
| BstMBI | GATC | 2 cut(s) | 28, 169 |
| BstSCI | CCNGG | 4 cut(s) | 153, 244, 245, 260 |
| BstSLI | GKGCMC | 3 cut(s) | 87, 160, 270 |
| BstUI | CGCG | 1 cut(s) | 337 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 4 cut(s) | 158, 204, 230, 299 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgZI | GCGATG | 1 cut(s) | 175 |
| BtuMI | TCGCGA | 1 cut(s) | 337 |
| BveI | ACCTGC | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 2 cut(s) | 87, 206 |
| Cfr13I | GGNCC | 5 cut(s) | 151, 156, 157, 203, 229 |
| Cfr9I | CCCGGG | 1 cut(s) | 245 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CpoI | CGGWCCG | 1 cut(s) | 151 |
| CspI | CGGWCCG | 1 cut(s) | 151 |
| CviJI | RGCY | 6 cut(s) | 5, 158, 204, 230, 299, 348 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 158, 204, 230, 299, 348 |
| DdeI | CTNAG | 1 cut(s) | 65 |
| DpnI | GATC | 2 cut(s) | 30, 171 |
| DpnII | GATC | 2 cut(s) | 28, 169 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 312 |
| EarI | CTCTTC | 1 cut(s) | 312 |
| Eco24I | GRGCYC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| Eco88I | CYCGRG | 1 cut(s) | 245 |
| EcoT38I | GRGCYC | 1 cut(s) | 160 |
| Esp3I | CGTCTC | 1 cut(s) | 100 |
| FaiI | YATR | 1 cut(s) | 201 |
| FauI | CCCGC | 2 cut(s) | 94, 213 |
| FblI | GTMKAC | 1 cut(s) | 217 |
| FriOI | GRGCYC | 1 cut(s) | 160 |
| FspBI | CTAG | 1 cut(s) | 349 |
| HaeIII | GGCC | 4 cut(s) | 158, 204, 230, 299 |
| HapII | CCGG | 6 cut(s) | 149, 154, 227, 246, 261, 329 |
| HincII | GTYRAC | 1 cut(s) | 218 |
| HindII | GTYRAC | 1 cut(s) | 218 |
| HinfI | GANTC | 2 cut(s) | 241, 272 |
| HpaII | CCGG | 6 cut(s) | 149, 154, 227, 246, 261, 329 |
| Hpy166II | GTNNAC | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 2 cut(s) | 180, 236 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 336 |
| Hpy8I | GTNNAC | 1 cut(s) | 218 |
| Hpy99I | CGWCG | 1 cut(s) | 219 |
| HpyAV | CCTTC | 2 cut(s) | 205, 231 |
| HpyCH4III | ACNGT | 1 cut(s) | 54 |
| HpyF3I | CTNAG | 1 cut(s) | 65 |
| Kzo9I | GATC | 2 cut(s) | 28, 169 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 7 cut(s) | 162, 167, 176, 240, 259, 274, 342 |
| MaeI | CTAG | 1 cut(s) | 349 |
| MalI | GATC | 2 cut(s) | 30, 171 |
| MboI | GATC | 2 cut(s) | 28, 169 |
| MboII | GAAGA | 4 cut(s) | 28, 47, 50, 329 |
| MfeI | CAATTG | 1 cut(s) | 130 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MhlI | GDGCHC | 3 cut(s) | 87, 160, 270 |
| MlsI | TGGCCA | 1 cut(s) | 299 |
| MluCI | AATT | 1 cut(s) | 130 |
| MluNI | TGGCCA | 1 cut(s) | 299 |
| MlyI | GAGTC | 1 cut(s) | 235 |
| MnlI | CCTC | 2 cut(s) | 136, 242 |
| Mox20I | TGGCCA | 1 cut(s) | 299 |
| MscI | TGGCCA | 1 cut(s) | 299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 263 |
| Msp20I | TGGCCA | 1 cut(s) | 299 |
| MspI | CCGG | 6 cut(s) | 149, 154, 227, 246, 261, 329 |
| MspR9I | CCNGG | 4 cut(s) | 155, 246, 247, 262 |
| MunI | CAATTG | 1 cut(s) | 130 |
| Mva1269I | GAATGC | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 337 |
| NciI | CCSGG | 4 cut(s) | 155, 246, 247, 262 |
| NdeII | GATC | 2 cut(s) | 28, 169 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 72, 84, 158, 267 |
| NruI | TCGCGA | 1 cut(s) | 337 |
| OliI | CACNNNNGTG | 1 cut(s) | 263 |
| PaqCI | CACCTGC | 1 cut(s) | 171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 341 |
| PctI | GAATGC | 1 cut(s) | 89 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 72, 84, 158, 267 |
| PspOMI | GGGCCC | 1 cut(s) | 156 |
| PspPI | GGNCC | 5 cut(s) | 151, 156, 157, 203, 229 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| RruI | TCGCGA | 1 cut(s) | 337 |
| RseI | CAYNNNNRTG | 1 cut(s) | 263 |
| Rsr2I | CGGWCCG | 1 cut(s) | 151 |
| RsrII | CGGWCCG | 1 cut(s) | 151 |
| SalI | GTCGAC | 1 cut(s) | 216 |
| Sau3AI | GATC | 2 cut(s) | 28, 169 |
| Sau96I | GGNCC | 5 cut(s) | 151, 156, 157, 203, 229 |
| SchI | GAGTC | 1 cut(s) | 235 |
| ScrFI | CCNGG | 4 cut(s) | 155, 246, 247, 262 |
| SduI | GDGCHC | 3 cut(s) | 87, 160, 270 |
| SetI | ASST | 2 cut(s) | 165, 350 |
| SinI | GGWCC | 1 cut(s) | 151 |
| SmaI | CCCGGG | 1 cut(s) | 247 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 263 |
| Sse9I | AATT | 1 cut(s) | 130 |
| SsiI | CCGC | 2 cut(s) | 87, 206 |
| SspMI | CTAG | 1 cut(s) | 349 |
| StyD4I | CCNGG | 4 cut(s) | 153, 244, 245, 260 |
| TaaI | ACNGT | 1 cut(s) | 54 |
| TaqI | TCGA | 3 cut(s) | 27, 217, 278 |
| TasI | AATT | 1 cut(s) | 130 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| TspMI | CCCGGG | 1 cut(s) | 245 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |
| XmaI | CCCGGG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 217 |
| XspI | CTAG | 1 cut(s) | 349 |