Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 83 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 784 |
| AccBSI | CCGCTC | 1 cut(s) | 322 |
| AccII | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| AclWI | GGATC | 1 cut(s) | 1008 |
| AcoI | YGGCCR | 2 cut(s) | 183, 771 |
| AcsI | RAATTY | 1 cut(s) | 602 |
| AfaI | GTAC | 5 cut(s) | 85, 590, 640, 815, 854 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 305, 434, 704, 784, 920 |
| AjnI | CCWGG | 3 cut(s) | 247, 582, 858 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 715, 747 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 1 cut(s) | 1008 |
| Ama87I | CYCGRG | 1 cut(s) | 689 |
| AoxI | GGCC | 7 cut(s) | 116, 158, 183, 205, 221, 489, 771 |
| ApeKI | GCWGC | 5 cut(s) | 326, 504, 675, 694, 1005 |
| ApoI | RAATTY | 1 cut(s) | 602 |
| AseI | ATTAAT | 1 cut(s) | 432 |
| Asp718I | GGTACC | 1 cut(s) | 83 |
| AspLEI | GCGC | 5 cut(s) | 509, 938, 959, 961, 978 |
| AspS9I | GGNCC | 4 cut(s) | 117, 158, 222, 490 |
| AsuC2I | CCSGG | 3 cut(s) | 182, 551, 933 |
| AsuHPI | GGTGA | 1 cut(s) | 469 |
| AvaI | CYCGRG | 1 cut(s) | 689 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 690 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 5 cut(s) | 313, 516, 687, 706, 992 |
| BccI | CCATC | 6 cut(s) | 120, 300, 422, 525, 743, 947 |
| BceAI | ACGGC | 2 cut(s) | 220, 937 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 664, 698 |
| BciT130I | CCWGG | 3 cut(s) | 249, 584, 860 |
| BcnI | CCSGG | 3 cut(s) | 182, 551, 933 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 1 cut(s) | 704 |
| BfmI | CTRYAG | 1 cut(s) | 946 |
| BfoI | RGCGCY | 2 cut(s) | 510, 939 |
| BmcAI | AGTACT | 1 cut(s) | 590 |
| Bme1390I | CCNGG | 6 cut(s) | 182, 249, 551, 584, 860, 933 |
| BmeT110I | CYCGRG | 1 cut(s) | 689 |
| BmgT120I | GGNCC | 4 cut(s) | 117, 158, 222, 490 |
| BmiI | GGNNCC | 5 cut(s) | 73, 85, 159, 520, 709 |
| BmrFI | CCNGG | 6 cut(s) | 182, 249, 551, 584, 860, 933 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 933 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 2 cut(s) | 270, 605 |
| BpuMI | CCSGG | 3 cut(s) | 182, 551, 933 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 279 |
| BsaJI | CCNNGG | 1 cut(s) | 486 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 503, 533 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 305, 434, 704, 784, 920 |
| Bse118I | RCCGGY | 2 cut(s) | 697, 769 |
| Bse1I | ACTGG | 5 cut(s) | 159, 230, 424, 596, 640 |
| Bse3DI | GCAATG | 1 cut(s) | 685 |
| BseBI | CCWGG | 3 cut(s) | 249, 584, 860 |
| BseCI | ATCGAT | 2 cut(s) | 27, 279 |
| BseDI | CCNNGG | 1 cut(s) | 486 |
| BseGI | GGATG | 3 cut(s) | 718, 868, 924 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 305, 434, 704, 784, 920 |
| BseMI | GCAATG | 1 cut(s) | 685 |
| BseNI | ACTGG | 5 cut(s) | 159, 230, 424, 596, 640 |
| BsePI | GCGCGC | 1 cut(s) | 957 |
| BseRI | GAGGAG | 2 cut(s) | 808, 930 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 771 |
| BseXI | GCAGC | 5 cut(s) | 313, 516, 687, 706, 992 |
| BsgI | GTGCAG | 1 cut(s) | 598 |
| Bsh1236I | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 502, 774 |
| BshFI | GGCC | 7 cut(s) | 118, 160, 185, 207, 223, 491, 773 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshVI | ATCGAT | 2 cut(s) | 27, 279 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 502, 774 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 1 cut(s) | 689 |
| BsiSI | CCGG | 7 cut(s) | 150, 182, 217, 550, 698, 770, 933 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 156, 219, 305, 434, 704, 784, 920 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmI | GAATGC | 2 cut(s) | 90, 842 |
| BsnI | GGCC | 7 cut(s) | 118, 160, 185, 207, 223, 491, 773 |
| BsoBI | CYCGRG | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 558, 690 |
| Bsp143I | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| Bsp19I | CCATGG | 1 cut(s) | 486 |
| BspANI | GGCC | 7 cut(s) | 118, 160, 185, 207, 223, 491, 773 |
| BspDI | ATCGAT | 2 cut(s) | 27, 279 |
| BspFNI | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| BspLI | GGNNCC | 5 cut(s) | 73, 85, 159, 520, 709 |
| BspPI | GGATC | 1 cut(s) | 1008 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrBI | CCGCTC | 1 cut(s) | 322 |
| BsrDI | GCAATG | 1 cut(s) | 685 |
| BsrFI | RCCGGY | 2 cut(s) | 697, 769 |
| BsrI | ACTGG | 5 cut(s) | 159, 230, 424, 596, 640 |
| BssAI | RCCGGY | 2 cut(s) | 697, 769 |
| BssECI | CCNNGG | 1 cut(s) | 486 |
| BssHII | GCGCGC | 1 cut(s) | 957 |
| BssMI | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 3 cut(s) | 249, 584, 860 |
| Bst4CI | ACNGT | 3 cut(s) | 500, 515, 950 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 654 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 700 |
| BstC8I | GCNNGC | 5 cut(s) | 324, 425, 629, 771, 959 |
| BstDEI | CTNAG | 1 cut(s) | 1017 |
| BstDSI | CCRYGG | 1 cut(s) | 486 |
| BstF5I | GGATG | 3 cut(s) | 718, 868, 924 |
| BstFNI | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| BstH2I | RGCGCY | 2 cut(s) | 510, 939 |
| BstHHI | GCGC | 5 cut(s) | 509, 938, 959, 961, 978 |
| BstKTI | GATC | 4 cut(s) | 31, 283, 982, 1003 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 502, 774 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 694, 700, 942, 963 |
| BstNI | CCWGG | 3 cut(s) | 249, 584, 860 |
| BstSCI | CCNGG | 6 cut(s) | 180, 247, 549, 582, 858, 931 |
| BstSFI | CTRYAG | 1 cut(s) | 946 |
| BstUI | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| BstV1I | GCAGC | 5 cut(s) | 313, 516, 687, 706, 992 |
| BstZI | CGGCCG | 2 cut(s) | 183, 771 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 279 |
| BsuRI | GGCC | 7 cut(s) | 118, 160, 185, 207, 223, 491, 773 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 279 |
| BtgI | CCRYGG | 1 cut(s) | 486 |
| BtsCI | GGATG | 3 cut(s) | 718, 868, 924 |
| BtsI | GCAGTG | 1 cut(s) | 808 |
| BtsIMutI | CAGTG | 5 cut(s) | 417, 520, 633, 808, 955 |
| Cac8I | GCNNGC | 5 cut(s) | 324, 425, 629, 771, 959 |
| CfoI | GCGC | 5 cut(s) | 509, 938, 959, 961, 978 |
| Cfr10I | RCCGGY | 2 cut(s) | 697, 769 |
| Cfr13I | GGNCC | 4 cut(s) | 117, 158, 222, 490 |
| ClaI | ATCGAT | 2 cut(s) | 27, 279 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 5 cut(s) | 84, 589, 639, 814, 853 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 516, 551 |
| CviAII | CATG | 1 cut(s) | 487 |
| CviQI | GTAC | 5 cut(s) | 84, 589, 639, 814, 853 |
| DdeI | CTNAG | 1 cut(s) | 1017 |
| DpnI | GATC | 4 cut(s) | 30, 282, 981, 1002 |
| DpnII | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| EaeI | YGGCCR | 2 cut(s) | 183, 771 |
| EagI | CGGCCG | 2 cut(s) | 183, 771 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 654 |
| EarI | CTCTTC | 2 cut(s) | 33, 654 |
| EciI | GGCGGA | 3 cut(s) | 585, 731, 756 |
| EclXI | CGGCCG | 2 cut(s) | 183, 771 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco24I | GRGCYC | 1 cut(s) | 690 |
| Eco32I | GATATC | 1 cut(s) | 754 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 771 |
| Eco88I | CYCGRG | 1 cut(s) | 689 |
| EcoRII | CCWGG | 3 cut(s) | 247, 582, 858 |
| EcoRV | GATATC | 1 cut(s) | 754 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 690 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaeI | CATG | 1 cut(s) | 490 |
| FaiI | YATR | 7 cut(s) | 63, 286, 453, 488, 600, 874, 884 |
| FatI | CATG | 1 cut(s) | 486 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FokI | GGATG | 3 cut(s) | 705, 875, 911 |
| FriOI | GRGCYC | 1 cut(s) | 690 |
| FspBI | CTAG | 1 cut(s) | 704 |
| GlaI | GCGC | 5 cut(s) | 508, 937, 958, 960, 977 |
| GsuI | CTGGAG | 2 cut(s) | 270, 605 |
| HaeII | RGCGCY | 2 cut(s) | 510, 939 |
| HaeIII | GGCC | 7 cut(s) | 118, 160, 185, 207, 223, 491, 773 |
| HapII | CCGG | 7 cut(s) | 150, 182, 217, 550, 698, 770, 933 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 5 cut(s) | 509, 938, 959, 961, 978 |
| Hin1II | CATG | 1 cut(s) | 490 |
| Hin6I | GCGC | 5 cut(s) | 507, 936, 957, 959, 976 |
| HinP1I | GCGC | 5 cut(s) | 507, 936, 957, 959, 976 |
| HinfI | GANTC | 5 cut(s) | 132, 244, 573, 646, 900 |
| HpaII | CCGG | 7 cut(s) | 150, 182, 217, 550, 698, 770, 933 |
| HphI | GGTGA | 1 cut(s) | 469 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 239, 835 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 343, 998 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 137, 234, 938 |
| HpyCH4III | ACNGT | 3 cut(s) | 500, 515, 950 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 451, 615, 627 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 694, 700, 942, 963 |
| HpyF3I | CTNAG | 1 cut(s) | 1017 |
| Hsp92II | CATG | 1 cut(s) | 490 |
| HspAI | GCGC | 5 cut(s) | 507, 936, 957, 959, 976 |
| KpnI | GGTACC | 1 cut(s) | 87 |
| KroI | GCCGGC | 1 cut(s) | 769 |
| KroNI | GCCGGC | 1 cut(s) | 771 |
| Kzo9I | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| LmnI | GCTCC | 4 cut(s) | 524, 553, 707, 943 |
| Lsp1109I | GCAGC | 5 cut(s) | 313, 516, 687, 706, 992 |
| LweI | GCATC | 1 cut(s) | 933 |
| MaeI | CTAG | 1 cut(s) | 704 |
| MaeIII | GTNAC | 1 cut(s) | 878 |
| MalI | GATC | 4 cut(s) | 30, 282, 981, 1002 |
| MbiI | CCGCTC | 1 cut(s) | 322 |
| MboI | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| MboII | GAAGA | 7 cut(s) | 25, 50, 287, 601, 641, 730, 909 |
| MhlI | GDGCHC | 2 cut(s) | 558, 690 |
| MluCI | AATT | 2 cut(s) | 458, 602 |
| MlyI | GAGTC | 2 cut(s) | 238, 640 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MroNI | GCCGGC | 1 cut(s) | 769 |
| MseI | TTAA | 1 cut(s) | 432 |
| MspI | CCGG | 7 cut(s) | 150, 182, 217, 550, 698, 770, 933 |
| MspR9I | CCNGG | 6 cut(s) | 182, 249, 551, 584, 860, 933 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 842 |
| MvaI | CCWGG | 3 cut(s) | 249, 584, 860 |
| MvnI | CGCG | 4 cut(s) | 303, 959, 976, 978 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 694, 700, 942, 963 |
| NaeI | GCCGGC | 1 cut(s) | 771 |
| NciI | CCSGG | 3 cut(s) | 182, 551, 933 |
| NcoI | CCATGG | 1 cut(s) | 486 |
| NdeII | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| NgoMIV | GCCGGC | 1 cut(s) | 769 |
| NlaIII | CATG | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 5 cut(s) | 73, 85, 159, 520, 709 |
| NmuCI | GTSAC | 1 cut(s) | 878 |
| PauI | GCGCGC | 1 cut(s) | 957 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PctI | GAATGC | 2 cut(s) | 90, 842 |
| PdiI | GCCGGC | 1 cut(s) | 771 |
| PfeI | GAWTC | 3 cut(s) | 132, 573, 900 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 784 |
| PfoI | TCCNGGA | 3 cut(s) | 247, 582, 858 |
| PleI | GAGTC | 2 cut(s) | 238, 640 |
| PpsI | GAGTC | 2 cut(s) | 238, 640 |
| PshBI | ATTAAT | 1 cut(s) | 432 |
| Psp6I | CCWGG | 3 cut(s) | 247, 582, 858 |
| PspGI | CCWGG | 3 cut(s) | 247, 582, 858 |
| PspN4I | GGNNCC | 5 cut(s) | 73, 85, 159, 520, 709 |
| PspPI | GGNCC | 4 cut(s) | 117, 158, 222, 490 |
| PteI | GCGCGC | 1 cut(s) | 957 |
| RsaI | GTAC | 5 cut(s) | 85, 590, 640, 815, 854 |
| RsaNI | GTAC | 5 cut(s) | 84, 589, 639, 814, 853 |
| SaqAI | TTAA | 1 cut(s) | 432 |
| Sau3AI | GATC | 4 cut(s) | 28, 280, 979, 1000 |
| Sau96I | GGNCC | 4 cut(s) | 117, 158, 222, 490 |
| ScaI | AGTACT | 1 cut(s) | 590 |
| SchI | GAGTC | 2 cut(s) | 238, 640 |
| ScrFI | CCNGG | 6 cut(s) | 182, 249, 551, 584, 860, 933 |
| SduI | GDGCHC | 2 cut(s) | 558, 690 |
| SetI | ASST | 8 cut(s) | 107, 265, 482, 815, 848, 858, 910, 916 |
| SfaNI | GCATC | 1 cut(s) | 933 |
| SfcI | CTRYAG | 1 cut(s) | 946 |
| Sse9I | AATT | 2 cut(s) | 458, 602 |
| SspI | AATATT | 1 cut(s) | 888 |
| SspMI | CTAG | 1 cut(s) | 704 |
| StyD4I | CCNGG | 6 cut(s) | 180, 247, 549, 582, 858, 931 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 3 cut(s) | 500, 515, 950 |
| TaqI | TCGA | 5 cut(s) | 27, 130, 279, 462, 482 |
| TasI | AATT | 2 cut(s) | 458, 602 |
| TatI | WGTACW | 1 cut(s) | 588 |
| TauI | GCSGC | 5 cut(s) | 223, 306, 309, 322, 976 |
| TfiI | GAWTC | 3 cut(s) | 132, 573, 900 |
| Tru1I | TTAA | 1 cut(s) | 432 |
| Tru9I | TTAA | 1 cut(s) | 432 |
| TscAI | CASTG | 5 cut(s) | 424, 520, 640, 808, 955 |
| TseFI | GTSAC | 1 cut(s) | 878 |
| TseI | GCWGC | 5 cut(s) | 326, 504, 675, 694, 1005 |
| Tsp45I | GTSAC | 1 cut(s) | 878 |
| TspDTI | ATGAA | 1 cut(s) | 83 |
| TspRI | CASTG | 5 cut(s) | 424, 520, 640, 808, 955 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 784 |
| VspI | ATTAAT | 1 cut(s) | 432 |
| XapI | RAATTY | 1 cut(s) | 602 |
| XspI | CTAG | 1 cut(s) | 704 |
| ZrmI | AGTACT | 1 cut(s) | 590 |