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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 431, 500 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 652 |
| AccBSI | CCGCTC | 2 cut(s) | 776, 781 |
| AclWI | GGATC | 4 cut(s) | 145, 566, 579, 800 |
| AcoI | YGGCCR | 3 cut(s) | 163, 182, 300 |
| AcsI | RAATTY | 3 cut(s) | 252, 395, 767 |
| AcyI | GRCGYC | 1 cut(s) | 188 |
| AfaI | GTAC | 2 cut(s) | 337, 722 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 65, 134, 218, 496, 652, 815 |
| AgsI | TTSAA | 1 cut(s) | 590 |
| Alw26I | GTCTC | 4 cut(s) | 98, 107, 164, 539 |
| AlwI | GGATC | 4 cut(s) | 145, 566, 579, 800 |
| Ama87I | CYCGRG | 2 cut(s) | 331, 481 |
| AoxI | GGCC | 8 cut(s) | 155, 163, 182, 204, 220, 300, 452, 667 |
| ApaI | GGGCCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 1 cut(s) | 55 |
| ApoI | RAATTY | 3 cut(s) | 252, 395, 767 |
| AsiSI | GCGATCGC | 1 cut(s) | 823 |
| AspLEI | GCGC | 7 cut(s) | 83, 348, 515, 827, 829, 831, 847 |
| AspS9I | GGNCC | 7 cut(s) | 155, 156, 221, 437, 453, 561, 668 |
| AsuC2I | CCSGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| AvaI | CYCGRG | 2 cut(s) | 331, 481 |
| AvaII | GGWCC | 2 cut(s) | 437, 561 |
| BaeGI | GKGCMC | 3 cut(s) | 159, 273, 505 |
| BalI | TGGCCA | 1 cut(s) | 302 |
| BamHI | GGATCC | 1 cut(s) | 571 |
| BanI | GGYRCC | 2 cut(s) | 431, 500 |
| BanII | GRGCYC | 2 cut(s) | 159, 482 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 442, 474 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| BbvI | GCAGC | 1 cut(s) | 42 |
| BccI | CCATC | 3 cut(s) | 199, 286, 311 |
| BceAI | ACGGC | 2 cut(s) | 219, 832 |
| BcnI | CCSGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| BcoDI | GTCTC | 4 cut(s) | 98, 107, 164, 539 |
| BfoI | RGCGCY | 1 cut(s) | 84 |
| BisI | GCNGC | 6 cut(s) | 56, 163, 377, 471, 629, 843 |
| BlsI | GCNGC | 6 cut(s) | 57, 164, 378, 472, 630, 844 |
| Bme1390I | CCNGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| Bme18I | GGWCC | 2 cut(s) | 437, 561 |
| BmeT110I | CYCGRG | 2 cut(s) | 331, 481 |
| BmgT120I | GGNCC | 7 cut(s) | 155, 156, 221, 437, 453, 561, 668 |
| BmiI | GGNNCC | 6 cut(s) | 6, 157, 433, 439, 502, 573 |
| BmrFI | CCNGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| BmsI | GCATC | 4 cut(s) | 96, 363, 417, 726 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 102, 134 |
| BpuMI | CCSGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 686 |
| BsaHI | GRCGYC | 1 cut(s) | 188 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaWI | WCCGGW | 1 cut(s) | 434 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 65, 134, 218, 496, 652, 815 |
| Bse118I | RCCGGY | 1 cut(s) | 428 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 686 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseGI | GGATG | 5 cut(s) | 87, 303, 378, 621, 736 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 686 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 65, 134, 218, 496, 652, 815 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BsePI | GCGCGC | 2 cut(s) | 825, 827 |
| BseRI | GAGGAG | 2 cut(s) | 403, 682 |
| BseSI | GKGCMC | 3 cut(s) | 159, 273, 505 |
| BseX3I | CGGCCG | 2 cut(s) | 163, 182 |
| BseXI | GCAGC | 1 cut(s) | 42 |
| Bsh1285I | CGRYCG | 4 cut(s) | 166, 185, 468, 823 |
| BshFI | GGCC | 8 cut(s) | 157, 165, 184, 206, 222, 302, 454, 669 |
| BshNI | GGYRCC | 2 cut(s) | 431, 500 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 4 cut(s) | 166, 185, 468, 823 |
| BsiHKCI | CYCGRG | 2 cut(s) | 331, 481 |
| BsiSI | CCGG | 8 cut(s) | 135, 148, 159, 181, 429, 435, 523, 801 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 65, 134, 218, 496, 652, 815 |
| BsmAI | GTCTC | 4 cut(s) | 98, 107, 164, 539 |
| BsmBI | CGTCTC | 1 cut(s) | 98 |
| BsnI | GGCC | 8 cut(s) | 157, 165, 184, 206, 222, 302, 454, 669 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| BsoBI | CYCGRG | 2 cut(s) | 331, 481 |
| Bsp120I | GGGCCC | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 4 cut(s) | 159, 273, 482, 505 |
| Bsp143I | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| Bsp68I | TCGCGA | 1 cut(s) | 615 |
| BspANI | GGCC | 8 cut(s) | 157, 165, 184, 206, 222, 302, 454, 669 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspLI | GGNNCC | 6 cut(s) | 6, 157, 433, 439, 502, 573 |
| BspPI | GGATC | 4 cut(s) | 145, 566, 579, 800 |
| BspT107I | GGYRCC | 2 cut(s) | 431, 500 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 2 cut(s) | 776, 781 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BsrFI | RCCGGY | 1 cut(s) | 428 |
| BssAI | RCCGGY | 1 cut(s) | 428 |
| BssHII | GCGCGC | 2 cut(s) | 825, 827 |
| BssMI | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| BssNI | GRCGYC | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 1 cut(s) | 466 |
| BstACI | GRCGYC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 6 cut(s) | 85, 208, 350, 671, 827, 829 |
| BstF5I | GGATG | 5 cut(s) | 87, 303, 378, 621, 736 |
| BstH2I | RGCGCY | 1 cut(s) | 84 |
| BstHHI | GCGC | 7 cut(s) | 83, 348, 515, 827, 829, 831, 847 |
| BstKTI | GATC | 7 cut(s) | 31, 43, 140, 574, 808, 823, 851 |
| BstMAI | GTCTC | 4 cut(s) | 98, 107, 164, 539 |
| BstMBI | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| BstMCI | CGRYCG | 4 cut(s) | 166, 185, 468, 823 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 670, 810, 833, 842, 853 |
| BstSCI | CCNGG | 5 cut(s) | 133, 157, 179, 522, 799 |
| BstSLI | GKGCMC | 3 cut(s) | 159, 273, 505 |
| BstV1I | GCAGC | 1 cut(s) | 42 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| BstZI | CGGCCG | 2 cut(s) | 163, 182 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 8 cut(s) | 157, 165, 184, 206, 222, 302, 454, 669 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgZI | GCGATG | 2 cut(s) | 177, 630 |
| BtsCI | GGATG | 5 cut(s) | 87, 303, 378, 621, 736 |
| BtuMI | TCGCGA | 1 cut(s) | 615 |
| Cac8I | GCNNGC | 6 cut(s) | 85, 208, 350, 671, 827, 829 |
| CfoI | GCGC | 7 cut(s) | 83, 348, 515, 827, 829, 831, 847 |
| Cfr10I | RCCGGY | 1 cut(s) | 428 |
| Cfr13I | GGNCC | 7 cut(s) | 155, 156, 221, 437, 453, 561, 668 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 196 |
| Csp6I | GTAC | 2 cut(s) | 336, 721 |
| CviAII | CATG | 1 cut(s) | 144 |
| CviQI | GTAC | 2 cut(s) | 336, 721 |
| DpnI | GATC | 7 cut(s) | 30, 42, 139, 573, 807, 822, 850 |
| DpnII | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| EaeI | YGGCCR | 3 cut(s) | 163, 182, 300 |
| EagI | CGGCCG | 2 cut(s) | 163, 182 |
| EclXI | CGGCCG | 2 cut(s) | 163, 182 |
| Eco24I | GRGCYC | 2 cut(s) | 159, 482 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco47I | GGWCC | 2 cut(s) | 437, 561 |
| Eco52I | CGGCCG | 2 cut(s) | 163, 182 |
| Eco88I | CYCGRG | 2 cut(s) | 331, 481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 453 |
| EcoT38I | GRGCYC | 2 cut(s) | 159, 482 |
| Esp3I | CGTCTC | 1 cut(s) | 98 |
| FaeI | CATG | 1 cut(s) | 147 |
| FaiI | YATR | 9 cut(s) | 107, 145, 361, 493, 520, 533, 595, 698, 715 |
| FatI | CATG | 1 cut(s) | 143 |
| FauI | CCCGC | 5 cut(s) | 362, 633, 678, 781, 818 |
| Fnu4HI | GCNGC | 6 cut(s) | 56, 163, 377, 471, 629, 843 |
| FokI | GGATG | 5 cut(s) | 74, 290, 385, 608, 743 |
| FriOI | GRGCYC | 2 cut(s) | 159, 482 |
| Fsp4HI | GCNGC | 6 cut(s) | 56, 163, 377, 471, 629, 843 |
| GlaI | GCGC | 7 cut(s) | 82, 347, 514, 826, 828, 830, 846 |
| GluI | GCNGC | 6 cut(s) | 56, 163, 377, 471, 629, 843 |
| HaeII | RGCGCY | 1 cut(s) | 84 |
| HaeIII | GGCC | 8 cut(s) | 157, 165, 184, 206, 222, 302, 454, 669 |
| HapII | CCGG | 8 cut(s) | 135, 148, 159, 181, 429, 435, 523, 801 |
| HgaI | GACGC | 1 cut(s) | 196 |
| HhaI | GCGC | 7 cut(s) | 83, 348, 515, 827, 829, 831, 847 |
| Hin1I | GRCGYC | 1 cut(s) | 188 |
| Hin1II | CATG | 1 cut(s) | 147 |
| Hin6I | GCGC | 7 cut(s) | 81, 346, 513, 825, 827, 829, 845 |
| HinP1I | GCGC | 7 cut(s) | 81, 346, 513, 825, 827, 829, 845 |
| HinfI | GANTC | 3 cut(s) | 243, 586, 792 |
| HpaII | CCGG | 8 cut(s) | 135, 148, 159, 181, 429, 435, 523, 801 |
| Hpy188I | TCNGA | 2 cut(s) | 238, 585 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 331, 544, 614 |
| Hpy99I | CGWCG | 3 cut(s) | 190, 221, 615 |
| HpyAV | CCTTC | 4 cut(s) | 233, 444, 550, 806 |
| HpyCH4III | ACNGT | 1 cut(s) | 466 |
| HpyCH4V | TGCA | 2 cut(s) | 408, 535 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 670, 810, 833, 842, 853 |
| Hsp92I | GRCGYC | 1 cut(s) | 188 |
| Hsp92II | CATG | 1 cut(s) | 147 |
| HspAI | GCGC | 7 cut(s) | 81, 346, 513, 825, 827, 829, 845 |
| Kzo9I | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| LmnI | GCTCC | 2 cut(s) | 10, 781 |
| Lsp1109I | GCAGC | 1 cut(s) | 42 |
| LweI | GCATC | 4 cut(s) | 96, 363, 417, 726 |
| MaeIII | GTNAC | 1 cut(s) | 526 |
| MalI | GATC | 7 cut(s) | 30, 42, 139, 573, 807, 822, 850 |
| MauBI | CGCGCGCG | 1 cut(s) | 825 |
| MbiI | CCGCTC | 2 cut(s) | 776, 781 |
| MboI | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| MboII | GAAGA | 4 cut(s) | 25, 28, 50, 225 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 4 cut(s) | 159, 273, 482, 505 |
| MlsI | TGGCCA | 1 cut(s) | 302 |
| MluCI | AATT | 3 cut(s) | 252, 395, 767 |
| MluNI | TGGCCA | 1 cut(s) | 302 |
| MlyI | GAGTC | 1 cut(s) | 237 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| Mox20I | TGGCCA | 1 cut(s) | 302 |
| MscI | TGGCCA | 1 cut(s) | 302 |
| Msp20I | TGGCCA | 1 cut(s) | 302 |
| MspA1I | CMGCKG | 1 cut(s) | 260 |
| MspI | CCGG | 8 cut(s) | 135, 148, 159, 181, 429, 435, 523, 801 |
| MspR9I | CCNGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 670, 810, 833, 842, 853 |
| NciI | CCSGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| NdeII | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| NlaIII | CATG | 1 cut(s) | 147 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 157, 433, 439, 502, 573 |
| NmeAIII | GCCGAG | 3 cut(s) | 191, 345, 645 |
| NruI | TCGCGA | 1 cut(s) | 615 |
| PauI | GCGCGC | 2 cut(s) | 825, 827 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 209, 470 |
| PfeI | GAWTC | 2 cut(s) | 586, 792 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 652 |
| PfoI | TCCNGGA | 1 cut(s) | 133 |
| PkrI | GCNGC | 6 cut(s) | 57, 164, 378, 472, 630, 844 |
| Ple19I | CGATCG | 1 cut(s) | 823 |
| PleI | GAGTC | 1 cut(s) | 237 |
| PpsI | GAGTC | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 157, 433, 439, 502, 573 |
| PspOMI | GGGCCC | 1 cut(s) | 155 |
| PspPI | GGNCC | 7 cut(s) | 155, 156, 221, 437, 453, 561, 668 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| PteI | GCGCGC | 2 cut(s) | 825, 827 |
| PvuI | CGATCG | 1 cut(s) | 823 |
| RgaI | GCGATCGC | 1 cut(s) | 823 |
| RruI | TCGCGA | 1 cut(s) | 615 |
| RsaI | GTAC | 2 cut(s) | 337, 722 |
| RsaNI | GTAC | 2 cut(s) | 336, 721 |
| SatI | GCNGC | 6 cut(s) | 56, 163, 377, 471, 629, 843 |
| Sau3AI | GATC | 7 cut(s) | 28, 40, 137, 571, 805, 820, 848 |
| Sau96I | GGNCC | 7 cut(s) | 155, 156, 221, 437, 453, 561, 668 |
| SchI | GAGTC | 1 cut(s) | 237 |
| ScrFI | CCNGG | 5 cut(s) | 135, 159, 181, 524, 801 |
| SduI | GDGCHC | 4 cut(s) | 159, 273, 482, 505 |
| SetI | ASST | 2 cut(s) | 492, 763 |
| SfaAI | GCGATCGC | 1 cut(s) | 823 |
| SfaNI | GCATC | 4 cut(s) | 96, 363, 417, 726 |
| SgfI | GCGATCGC | 1 cut(s) | 823 |
| SinI | GGWCC | 2 cut(s) | 437, 561 |
| Sse9I | AATT | 3 cut(s) | 252, 395, 767 |
| StyD4I | CCNGG | 5 cut(s) | 133, 157, 179, 522, 799 |
| TaaI | ACNGT | 1 cut(s) | 466 |
| TaqI | TCGA | 8 cut(s) | 27, 43, 281, 543, 577, 702, 783, 859 |
| TaqII | GACCGA | 1 cut(s) | 549 |
| TasI | AATT | 3 cut(s) | 252, 395, 767 |
| TauI | GCSGC | 5 cut(s) | 165, 379, 473, 631, 845 |
| TfiI | GAWTC | 2 cut(s) | 586, 792 |
| TseI | GCWGC | 1 cut(s) | 55 |
| TspDTI | ATGAA | 2 cut(s) | 62, 676 |
| TspGWI | ACGGA | 5 cut(s) | 80, 336, 599, 743, 804 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 652 |
| VpaK11BI | GGWCC | 2 cut(s) | 437, 561 |
| XapI | RAATTY | 3 cut(s) | 252, 395, 767 |