Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1530 |
| AbsI | CCTCGAGG | 1 cut(s) | 2087 |
| Acc16I | TGCGCA | 1 cut(s) | 2304 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 713, 1886 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 311, 864, 1382, 1415 |
| AccBSI | CCGCTC | 3 cut(s) | 215, 328, 2291 |
| AclWI | GGATC | 4 cut(s) | 1484, 1619, 2819, 2832 |
| AcoI | YGGCCR | 7 cut(s) | 385, 460, 666, 1417, 1443, 1848, 2292 |
| AcsI | RAATTY | 2 cut(s) | 608, 803 |
| AcuI | CTGAAG | 4 cut(s) | 207, 1305, 1725, 2799 |
| AcyI | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| AdeI | CACNNNGTG | 1 cut(s) | 311 |
| AfaI | GTAC | 7 cut(s) | 280, 596, 622, 734, 1080, 1881, 2192 |
| Alw21I | GWGCWC | 2 cut(s) | 517, 564 |
| Alw26I | GTCTC | 3 cut(s) | 751, 1234, 2608 |
| AlwI | GGATC | 4 cut(s) | 1484, 1619, 2819, 2832 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1415, 1997 |
| Ama87I | CYCGRG | 1 cut(s) | 2087 |
| ApaI | GGGCCC | 2 cut(s) | 161, 1059 |
| ApoI | RAATTY | 2 cut(s) | 608, 803 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1199, 1231 |
| AseI | ATTAAT | 1 cut(s) | 2280 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1992, 2234 |
| AsuC2I | CCSGG | 4 cut(s) | 182, 557, 1426, 2416 |
| AsuHPI | GGTGA | 4 cut(s) | 315, 1589, 2104, 2126 |
| AsuNHI | GCTAGC | 1 cut(s) | 1649 |
| AvaI | CYCGRG | 1 cut(s) | 2087 |
| AvaII | GGWCC | 1 cut(s) | 1539 |
| BaeGI | GKGCMC | 3 cut(s) | 88, 161, 1059 |
| BalI | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| BamHI | GGATCC | 1 cut(s) | 2824 |
| BanI | GGYRCC | 3 cut(s) | 83, 713, 1886 |
| BanII | GRGCYC | 5 cut(s) | 161, 517, 1059, 1342, 2185 |
| BauI | CACGAG | 1 cut(s) | 2361 |
| BbsI | GAAGAC | 3 cut(s) | 89, 293, 2667 |
| Bbv12I | GWGCWC | 2 cut(s) | 517, 564 |
| BbvCI | CCTCAGC | 1 cut(s) | 1567 |
| BceAI | ACGGC | 3 cut(s) | 681, 694, 2427 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 38, 72, 1253, 1287, 1660, 1694, 1770, 1804 |
| BciVI | GTATCC | 1 cut(s) | 1148 |
| BcnI | CCSGG | 4 cut(s) | 182, 557, 1426, 2416 |
| BcoDI | GTCTC | 3 cut(s) | 751, 1234, 2608 |
| BfaI | CTAG | 7 cut(s) | 695, 761, 1650, 2075, 2372, 2453, 2483 |
| BfmI | CTRYAG | 1 cut(s) | 682 |
| BfoI | RGCGCY | 4 cut(s) | 717, 1610, 1890, 2795 |
| BfuI | GTATCC | 1 cut(s) | 1148 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 984 |
| BmcAI | AGTACT | 3 cut(s) | 596, 1881, 2192 |
| Bme18I | GGWCC | 1 cut(s) | 1539 |
| BmeT110I | CYCGRG | 1 cut(s) | 2087 |
| BmrI | ACTGGG | 2 cut(s) | 164, 1563 |
| BmsI | GCATC | 6 cut(s) | 773, 1009, 1279, 1723, 1942, 2521 |
| BmtI | GCTAGC | 1 cut(s) | 1653 |
| BmuI | ACTGGG | 2 cut(s) | 164, 1563 |
| BpiI | GAAGAC | 3 cut(s) | 89, 293, 2667 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1708, 1740 |
| BpmI | CTGGAG | 4 cut(s) | 113, 1213, 2207, 2462 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1567 |
| BpuEI | CTTGAG | 5 cut(s) | 1334, 1528, 2215, 2441, 2472 |
| BpuMI | CCSGG | 4 cut(s) | 182, 557, 1426, 2416 |
| Bsa29I | ATCGAT | 1 cut(s) | 319 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1829, 2843 |
| BsaHI | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| BsaJI | CCNNGG | 9 cut(s) | 248, 492, 533, 1134, 1353, 1493, 2121, 2270, 2319 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 108, 138, 509, 539, 2250, 2280 |
| Bse118I | RCCGGY | 3 cut(s) | 849, 1075, 1640 |
| Bse3DI | GCAATG | 1 cut(s) | 1329 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1829, 2843 |
| BseCI | ATCGAT | 1 cut(s) | 319 |
| BseDI | CCNNGG | 9 cut(s) | 248, 492, 533, 1134, 1353, 1493, 2121, 2270, 2319 |
| BseGI | GGATG | 7 cut(s) | 747, 1144, 1210, 1243, 1738, 2171, 2554 |
| BseJI | GATNNNNATC | 2 cut(s) | 1829, 2843 |
| BseMI | GCAATG | 1 cut(s) | 1329 |
| BseMII | CTCAG | 9 cut(s) | 1137, 1229, 1581, 2217, 2489, 2603, 2694, 2810, 2849 |
| BseRI | GAGGAG | 7 cut(s) | 116, 893, 1299, 2088, 2347, 2528, 2823 |
| BseSI | GKGCMC | 3 cut(s) | 88, 161, 1059 |
| BseX3I | CGGCCG | 2 cut(s) | 1848, 2292 |
| BseYI | CCCAGC | 2 cut(s) | 1408, 1903 |
| BsgI | GTGCAG | 2 cut(s) | 1278, 1700 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1851, 2295 |
| BshNI | GGYRCC | 3 cut(s) | 83, 713, 1886 |
| BshVI | ATCGAT | 1 cut(s) | 319 |
| BsiEI | CGRYCG | 2 cut(s) | 1851, 2295 |
| BsiHKAI | GWGCWC | 2 cut(s) | 517, 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2087 |
| BsiSI | CCGG | 8 cut(s) | 182, 556, 850, 1076, 1425, 1641, 1847, 2416 |
| BslFI | GGGAC | 4 cut(s) | 266, 1156, 2133, 2138 |
| BsmAI | GTCTC | 3 cut(s) | 751, 1234, 2608 |
| BsmFI | GGGAC | 4 cut(s) | 266, 1156, 2133, 2138 |
| BsmI | GAATGC | 2 cut(s) | 90, 1725 |
| BsoBI | CYCGRG | 1 cut(s) | 2087 |
| Bsp120I | GGGCCC | 2 cut(s) | 157, 1055 |
| Bsp1286I | GDGCHC | 7 cut(s) | 88, 161, 517, 564, 1059, 1342, 2185 |
| Bsp143I | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| Bsp19I | CCATGG | 3 cut(s) | 492, 1134, 1493 |
| Bsp68I | TCGCGA | 3 cut(s) | 827, 1220, 2211 |
| BspCNI | CTCAG | 9 cut(s) | 1138, 1230, 1580, 2218, 2488, 2604, 2695, 2811, 2848 |
| BspDI | ATCGAT | 1 cut(s) | 319 |
| BspHI | TCATGA | 1 cut(s) | 1741 |
| BspMAI | CTGCAG | 1 cut(s) | 686 |
| BspOI | GCTAGC | 1 cut(s) | 1653 |
| BspPI | GGATC | 4 cut(s) | 1484, 1619, 2819, 2832 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 713, 1886 |
| BsrBI | CCGCTC | 3 cut(s) | 215, 328, 2291 |
| BsrDI | GCAATG | 1 cut(s) | 1329 |
| BsrFI | RCCGGY | 3 cut(s) | 849, 1075, 1640 |
| BssAI | RCCGGY | 3 cut(s) | 849, 1075, 1640 |
| BssECI | CCNNGG | 9 cut(s) | 248, 492, 533, 1134, 1353, 1493, 2121, 2270, 2319 |
| BssMI | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| BssNI | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| BssSI | CACGAG | 1 cut(s) | 2361 |
| BssT1I | CCWWGG | 3 cut(s) | 492, 1134, 1493 |
| Bst2BI | CACGAG | 1 cut(s) | 2361 |
| Bst4CI | ACNGT | 5 cut(s) | 537, 1993, 2256, 2619, 2893 |
| Bst6I | CTCTTC | 3 cut(s) | 660, 1220, 1707 |
| BstACI | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1333, 1400 |
| BstDSI | CCRYGG | 4 cut(s) | 492, 533, 1134, 1493 |
| BstEII | GGTNACC | 1 cut(s) | 2648 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1346, 1953 |
| BstF5I | GGATG | 7 cut(s) | 747, 1144, 1210, 1243, 1738, 2171, 2554 |
| BstH2I | RGCGCY | 4 cut(s) | 717, 1610, 1890, 2795 |
| BstKTI | GATC | 9 cut(s) | 289, 323, 1105, 1301, 1492, 1522, 1627, 2709, 2827 |
| BstMAI | GTCTC | 3 cut(s) | 751, 1234, 2608 |
| BstMBI | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| BstMCI | CGRYCG | 2 cut(s) | 1851, 2295 |
| BstNSI | RCATGY | 1 cut(s) | 1090 |
| BstPI | GGTNACC | 1 cut(s) | 2648 |
| BstSFI | CTRYAG | 1 cut(s) | 682 |
| BstSLI | GKGCMC | 3 cut(s) | 88, 161, 1059 |
| BstV2I | GAAGAC | 3 cut(s) | 89, 293, 2667 |
| BstX2I | RGATCY | 1 cut(s) | 2824 |
| BstYI | RGATCY | 1 cut(s) | 2824 |
| BstZI | CGGCCG | 2 cut(s) | 1848, 2292 |
| Bsu15I | ATCGAT | 1 cut(s) | 319 |
| BsuI | GTATCC | 1 cut(s) | 1148 |
| BsuTUI | ATCGAT | 1 cut(s) | 319 |
| BtgI | CCRYGG | 4 cut(s) | 492, 533, 1134, 1493 |
| BtgZI | GCGATG | 3 cut(s) | 178, 842, 2753 |
| BtsCI | GGATG | 7 cut(s) | 747, 1144, 1210, 1243, 1738, 2171, 2554 |
| BtsI | GCAGTG | 1 cut(s) | 691 |
| BtsIMutI | CAGTG | 9 cut(s) | 639, 691, 1094, 1413, 1611, 1683, 1896, 2223, 2889 |
| BtuMI | TCGCGA | 3 cut(s) | 827, 1220, 2211 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1415, 1997 |
| CciI | TCATGA | 1 cut(s) | 1741 |
| CciNI | GCGGCCGC | 1 cut(s) | 2292 |
| Cfr10I | RCCGGY | 3 cut(s) | 849, 1075, 1640 |
| ClaI | ATCGAT | 1 cut(s) | 319 |
| CseI | GACGC | 2 cut(s) | 1139, 2071 |
| Csp6I | GTAC | 7 cut(s) | 279, 595, 621, 733, 1079, 1880, 2191 |
| CviQI | GTAC | 7 cut(s) | 279, 595, 621, 733, 1079, 1880, 2191 |
| DinI | GGCGCC | 2 cut(s) | 715, 1888 |
| DpnI | GATC | 9 cut(s) | 288, 322, 1104, 1300, 1491, 1521, 1626, 2708, 2826 |
| DpnII | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| DraI | TTTAAA | 1 cut(s) | 2638 |
| DraIII | CACNNNGTG | 1 cut(s) | 311 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1530 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1530 |
| EaeI | YGGCCR | 7 cut(s) | 385, 460, 666, 1417, 1443, 1848, 2292 |
| EagI | CGGCCG | 2 cut(s) | 1848, 2292 |
| Eam1104I | CTCTTC | 3 cut(s) | 660, 1220, 1707 |
| EarI | CTCTTC | 3 cut(s) | 660, 1220, 1707 |
| EciI | GGCGGA | 4 cut(s) | 591, 1187, 2821, 2884 |
| Ecl136II | GAGCTC | 1 cut(s) | 515 |
| EclXI | CGGCCG | 2 cut(s) | 1848, 2292 |
| Eco130I | CCWWGG | 3 cut(s) | 492, 1134, 1493 |
| Eco24I | GRGCYC | 5 cut(s) | 161, 517, 1059, 1342, 2185 |
| Eco32I | GATATC | 2 cut(s) | 834, 2155 |
| Eco47I | GGWCC | 1 cut(s) | 1539 |
| Eco52I | CGGCCG | 2 cut(s) | 1848, 2292 |
| Eco53kI | GAGCTC | 1 cut(s) | 515 |
| Eco57I | CTGAAG | 4 cut(s) | 207, 1305, 1725, 2799 |
| Eco88I | CYCGRG | 1 cut(s) | 2087 |
| Eco91I | GGTNACC | 1 cut(s) | 2648 |
| EcoICRI | GAGCTC | 1 cut(s) | 515 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1346, 1953 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1056, 1539, 1562, 2335 |
| EcoO65I | GGTNACC | 1 cut(s) | 2648 |
| EcoRI | GAATTC | 1 cut(s) | 608 |
| EcoRV | GATATC | 2 cut(s) | 834, 2155 |
| EcoT14I | CCWWGG | 3 cut(s) | 492, 1134, 1493 |
| EcoT38I | GRGCYC | 5 cut(s) | 161, 517, 1059, 1342, 2185 |
| EgeI | GGCGCC | 2 cut(s) | 715, 1888 |
| EheI | GGCGCC | 2 cut(s) | 715, 1888 |
| ErhI | CCWWGG | 3 cut(s) | 492, 1134, 1493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2618, 2650 |
| FaqI | GGGAC | 4 cut(s) | 266, 1156, 2133, 2138 |
| FauI | CCCGC | 5 cut(s) | 95, 220, 845, 1825, 2677 |
| FokI | GGATG | 7 cut(s) | 734, 1151, 1217, 1230, 1745, 2158, 2561 |
| FriOI | GRGCYC | 5 cut(s) | 161, 517, 1059, 1342, 2185 |
| FspBI | CTAG | 7 cut(s) | 695, 761, 1650, 2075, 2372, 2453, 2483 |
| FspI | TGCGCA | 1 cut(s) | 2304 |
| GsaI | CCCAGC | 2 cut(s) | 1412, 1907 |
| GsuI | CTGGAG | 4 cut(s) | 113, 1213, 2207, 2462 |
| HaeII | RGCGCY | 4 cut(s) | 717, 1610, 1890, 2795 |
| HapII | CCGG | 8 cut(s) | 182, 556, 850, 1076, 1425, 1641, 1847, 2416 |
| HgaI | GACGC | 2 cut(s) | 1139, 2071 |
| Hin1I | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| HincII | GTYRAC | 1 cut(s) | 1924 |
| HindII | GTYRAC | 1 cut(s) | 1924 |
| HpaI | GTTAAC | 1 cut(s) | 1924 |
| HpaII | CCGG | 8 cut(s) | 182, 556, 850, 1076, 1425, 1641, 1847, 2416 |
| HphI | GGTGA | 4 cut(s) | 315, 1589, 2104, 2126 |
| Hpy166II | GTNNAC | 1 cut(s) | 1924 |
| Hpy8I | GTNNAC | 1 cut(s) | 1924 |
| Hpy99I | CGWCG | 4 cut(s) | 827, 1133, 1976, 2211 |
| HpyCH4III | ACNGT | 5 cut(s) | 537, 1993, 2256, 2619, 2893 |
| HpyCH4IV | ACGT | 1 cut(s) | 1971 |
| HpySE526I | ACGT | 1 cut(s) | 1971 |
| Hsp92I | GRCGYC | 3 cut(s) | 714, 1131, 1887 |
| KasI | GGCGCC | 2 cut(s) | 713, 1886 |
| KspAI | GTTAAC | 1 cut(s) | 1924 |
| Kzo9I | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| LweI | GCATC | 6 cut(s) | 773, 1009, 1279, 1723, 1942, 2521 |
| MaeI | CTAG | 7 cut(s) | 695, 761, 1650, 2075, 2372, 2453, 2483 |
| MaeII | ACGT | 1 cut(s) | 1971 |
| MaeIII | GTNAC | 5 cut(s) | 2092, 2256, 2363, 2407, 2648 |
| MalI | GATC | 9 cut(s) | 288, 322, 1104, 1300, 1491, 1521, 1626, 2708, 2826 |
| MbiI | CCGCTC | 3 cut(s) | 215, 328, 2291 |
| MboI | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| MfeI | CAATTG | 3 cut(s) | 1186, 1661, 2396 |
| MflI | RGATCY | 1 cut(s) | 2824 |
| MhlI | GDGCHC | 7 cut(s) | 88, 161, 517, 564, 1059, 1342, 2185 |
| MlsI | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| MluNI | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| Mly113I | GGCGCC | 2 cut(s) | 714, 1887 |
| MlyI | GAGTC | 7 cut(s) | 167, 238, 464, 646, 1781, 2089, 2348 |
| MmeI | TCCRAC | 2 cut(s) | 130, 2530 |
| Mox20I | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1992, 2234 |
| MscI | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| MseI | TTAA | 8 cut(s) | 372, 1398, 1923, 2144, 2280, 2567, 2592, 2637 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1248 |
| Msp20I | TGGCCA | 3 cut(s) | 387, 462, 1419 |
| MspA1I | CMGCKG | 6 cut(s) | 522, 840, 1571, 1907, 2027, 2525 |
| MspI | CCGG | 8 cut(s) | 182, 556, 850, 1076, 1425, 1641, 1847, 2416 |
| MunI | CAATTG | 3 cut(s) | 1186, 1661, 2396 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 1725 |
| NarI | GGCGCC | 2 cut(s) | 714, 1887 |
| NciI | CCSGG | 4 cut(s) | 182, 557, 1426, 2416 |
| NcoI | CCATGG | 3 cut(s) | 492, 1134, 1493 |
| NdeII | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| NheI | GCTAGC | 1 cut(s) | 1649 |
| NmuCI | GTSAC | 3 cut(s) | 2092, 2363, 2407 |
| NotI | GCGGCCGC | 1 cut(s) | 2292 |
| NruI | TCGCGA | 3 cut(s) | 827, 1220, 2211 |
| NsbI | TGCGCA | 1 cut(s) | 2304 |
| NspI | RCATGY | 1 cut(s) | 1090 |
| PaeI | GCATGC | 1 cut(s) | 1090 |
| PaeR7I | CTCGAG | 1 cut(s) | 2087 |
| PagI | TCATGA | 1 cut(s) | 1741 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1528, 2212 |
| PctI | GAATGC | 2 cut(s) | 90, 1725 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1992, 2234 |
| PfeI | GAWTC | 5 cut(s) | 798, 1672, 1792, 2263, 2815 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 311, 864, 1382, 1415 |
| PfoI | TCCNGGA | 1 cut(s) | 1424 |
| PleI | GAGTC | 7 cut(s) | 167, 238, 464, 646, 1781, 2089, 2348 |
| PluTI | GGCGCC | 2 cut(s) | 717, 1890 |
| PpsI | GAGTC | 7 cut(s) | 167, 238, 464, 646, 1781, 2089, 2348 |
| PpuMI | RGGWCCY | 1 cut(s) | 1539 |
| PshBI | ATTAAT | 1 cut(s) | 2280 |
| Psp124BI | GAGCTC | 1 cut(s) | 517 |
| Psp5II | RGGWCCY | 1 cut(s) | 1539 |
| PspEI | GGTNACC | 1 cut(s) | 2648 |
| PspFI | CCCAGC | 2 cut(s) | 1408, 1903 |
| PspOMI | GGGCCC | 2 cut(s) | 157, 1055 |
| PspPPI | RGGWCCY | 1 cut(s) | 1539 |
| PspXI | VCTCGAGB | 1 cut(s) | 2087 |
| PstI | CTGCAG | 1 cut(s) | 686 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1415, 1997 |
| PsuI | RGATCY | 1 cut(s) | 2824 |
| PvuII | CAGCTG | 2 cut(s) | 1571, 1907 |
| RruI | TCGCGA | 3 cut(s) | 827, 1220, 2211 |
| RsaI | GTAC | 7 cut(s) | 280, 596, 622, 734, 1080, 1881, 2192 |
| RsaNI | GTAC | 7 cut(s) | 279, 595, 621, 733, 1079, 1880, 2191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1248 |
| SacI | GAGCTC | 1 cut(s) | 517 |
| SaqAI | TTAA | 8 cut(s) | 372, 1398, 1923, 2144, 2280, 2567, 2592, 2637 |
| Sau3AI | GATC | 9 cut(s) | 286, 320, 1102, 1298, 1489, 1519, 1624, 2706, 2824 |
| ScaI | AGTACT | 3 cut(s) | 596, 1881, 2192 |
| SchI | GAGTC | 7 cut(s) | 167, 238, 464, 646, 1781, 2089, 2348 |
| SduI | GDGCHC | 7 cut(s) | 88, 161, 517, 564, 1059, 1342, 2185 |
| SfaNI | GCATC | 6 cut(s) | 773, 1009, 1279, 1723, 1942, 2521 |
| SfcI | CTRYAG | 1 cut(s) | 682 |
| SfoI | GGCGCC | 2 cut(s) | 715, 1888 |
| Sfr274I | CTCGAG | 1 cut(s) | 2087 |
| SinI | GGWCC | 1 cut(s) | 1539 |
| SlaI | CTCGAG | 1 cut(s) | 2087 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1248 |
| SmlI | CTYRAG | 6 cut(s) | 1313, 1543, 2087, 2194, 2420, 2487 |
| SmoI | CTYRAG | 6 cut(s) | 1313, 1543, 2087, 2194, 2420, 2487 |
| SphI | GCATGC | 1 cut(s) | 1090 |
| SspDI | GGCGCC | 2 cut(s) | 713, 1886 |
| SspI | AATATT | 1 cut(s) | 2469 |
| SspMI | CTAG | 7 cut(s) | 695, 761, 1650, 2075, 2372, 2453, 2483 |
| SstI | GAGCTC | 1 cut(s) | 517 |
| StyI | CCWWGG | 3 cut(s) | 492, 1134, 1493 |
| TaaI | ACNGT | 5 cut(s) | 537, 1993, 2256, 2619, 2893 |
| TaiI | ACGT | 1 cut(s) | 1974 |
| TatI | WGTACW | 4 cut(s) | 594, 620, 1879, 2190 |
| TfiI | GAWTC | 5 cut(s) | 798, 1672, 1792, 2263, 2815 |
| Tru1I | TTAA | 8 cut(s) | 372, 1398, 1923, 2144, 2280, 2567, 2592, 2637 |
| Tru9I | TTAA | 8 cut(s) | 372, 1398, 1923, 2144, 2280, 2567, 2592, 2637 |
| TscAI | CASTG | 9 cut(s) | 646, 691, 1101, 1420, 1618, 1683, 1903, 2230, 2896 |
| TseFI | GTSAC | 3 cut(s) | 2092, 2363, 2407 |
| Tsp45I | GTSAC | 3 cut(s) | 2092, 2363, 2407 |
| TspGWI | ACGGA | 3 cut(s) | 1171, 2142, 2164 |
| TspRI | CASTG | 9 cut(s) | 646, 691, 1101, 1420, 1618, 1683, 1903, 2230, 2896 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 311, 864, 1382, 1415 |
| VpaK11BI | GGWCC | 1 cut(s) | 1539 |
| VspI | ATTAAT | 1 cut(s) | 2280 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1346, 1953 |
| XapI | RAATTY | 2 cut(s) | 608, 803 |
| XceI | RCATGY | 1 cut(s) | 1090 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1355, 1610, 1765, 2542 |
| XhoI | CTCGAG | 1 cut(s) | 2087 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1992, 2234 |
| XspI | CTAG | 7 cut(s) | 695, 761, 1650, 2075, 2372, 2453, 2483 |
| ZrmI | AGTACT | 3 cut(s) | 596, 1881, 2192 |