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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 516 |
| AccII | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| AclWI | GGATC | 3 cut(s) | 305, 352, 583 |
| AcoI | YGGCCR | 1 cut(s) | 593 |
| AcyI | GRCGYC | 1 cut(s) | 517 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 28, 122, 123, 172, 198, 361, 455 |
| AgeI | ACCGGT | 1 cut(s) | 154 |
| AgsI | TTSAA | 1 cut(s) | 398 |
| AluBI | AGCT | 2 cut(s) | 384, 441 |
| AluI | AGCT | 2 cut(s) | 384, 441 |
| AlwI | GGATC | 3 cut(s) | 305, 352, 583 |
| Ama87I | CYCGRG | 2 cut(s) | 122, 389 |
| AoxI | GGCC | 6 cut(s) | 47, 113, 125, 247, 351, 593 |
| ApaI | GGGCCC | 1 cut(s) | 117 |
| AsiGI | ACCGGT | 1 cut(s) | 154 |
| AspS9I | GGNCC | 8 cut(s) | 113, 114, 125, 201, 225, 248, 352, 551 |
| AsuC2I | CCSGG | 2 cut(s) | 14, 362 |
| AvaI | CYCGRG | 2 cut(s) | 122, 389 |
| AvaII | GGWCC | 3 cut(s) | 201, 225, 551 |
| BaeGI | GKGCMC | 1 cut(s) | 117 |
| BanI | GGYRCC | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BauI | CACGAG | 1 cut(s) | 505 |
| BccI | CCATC | 1 cut(s) | 28 |
| BceAI | ACGGC | 5 cut(s) | 45, 176, 521, 530, 559 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 346, 380 |
| BcnI | CCSGG | 2 cut(s) | 14, 362 |
| BfaI | CTAG | 1 cut(s) | 240 |
| BfoI | RGCGCY | 5 cut(s) | 20, 296, 471, 520, 572 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 592 |
| BisI | GCNGC | 5 cut(s) | 57, 89, 135, 493, 572 |
| BlsI | GCNGC | 5 cut(s) | 58, 90, 136, 494, 573 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 362 |
| Bme18I | GGWCC | 3 cut(s) | 201, 225, 551 |
| BmeT110I | CYCGRG | 2 cut(s) | 122, 389 |
| BmgT120I | GGNCC | 8 cut(s) | 113, 114, 125, 201, 225, 248, 352, 551 |
| BmiI | GGNNCC | 7 cut(s) | 115, 116, 202, 250, 354, 435, 518 |
| BmrFI | CCNGG | 2 cut(s) | 14, 362 |
| BmsI | GCATC | 3 cut(s) | 178, 409, 479 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 2 cut(s) | 214, 481 |
| BpuMI | CCSGG | 2 cut(s) | 14, 362 |
| Bsa29I | ATCGAT | 1 cut(s) | 186 |
| BsaHI | GRCGYC | 1 cut(s) | 517 |
| BsaJI | CCNNGG | 4 cut(s) | 12, 92, 192, 390 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 262, 292 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 28, 122, 123, 172, 198, 361, 455 |
| Bse118I | RCCGGY | 4 cut(s) | 154, 260, 325, 595 |
| BseCI | ATCGAT | 1 cut(s) | 186 |
| BseDI | CCNNGG | 4 cut(s) | 12, 92, 192, 390 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 28, 122, 123, 172, 198, 361, 455 |
| BsePI | GCGCGC | 2 cut(s) | 38, 40 |
| BseRI | GAGGAG | 2 cut(s) | 11, 57 |
| BseSI | GKGCMC | 1 cut(s) | 117 |
| BseX3I | CGGCCG | 1 cut(s) | 593 |
| BsgI | GTGCAG | 1 cut(s) | 386 |
| Bsh1236I | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| Bsh1285I | CGRYCG | 1 cut(s) | 596 |
| BshFI | GGCC | 6 cut(s) | 49, 115, 127, 249, 353, 595 |
| BshNI | GGYRCC | 1 cut(s) | 516 |
| BshTI | ACCGGT | 1 cut(s) | 154 |
| BshVI | ATCGAT | 1 cut(s) | 186 |
| BsiEI | CGRYCG | 1 cut(s) | 596 |
| BsiHKCI | CYCGRG | 2 cut(s) | 122, 389 |
| BsiSI | CCGG | 7 cut(s) | 14, 155, 261, 326, 362, 592, 596 |
| BslFI | GGGAC | 1 cut(s) | 214 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 28, 122, 123, 172, 198, 361, 455 |
| BsmFI | GGGAC | 1 cut(s) | 214 |
| BsmI | GAATGC | 1 cut(s) | 411 |
| BsnI | GGCC | 6 cut(s) | 49, 115, 127, 249, 353, 595 |
| BsoBI | CYCGRG | 2 cut(s) | 122, 389 |
| Bsp120I | GGGCCC | 1 cut(s) | 113 |
| Bsp1286I | GDGCHC | 1 cut(s) | 117 |
| Bsp143I | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| Bsp68I | TCGCGA | 1 cut(s) | 526 |
| BspANI | GGCC | 6 cut(s) | 49, 115, 127, 249, 353, 595 |
| BspDI | ATCGAT | 1 cut(s) | 186 |
| BspFNI | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| BspLI | GGNNCC | 7 cut(s) | 115, 116, 202, 250, 354, 435, 518 |
| BspPI | GGATC | 3 cut(s) | 305, 352, 583 |
| BspT107I | GGYRCC | 1 cut(s) | 516 |
| BsrFI | RCCGGY | 4 cut(s) | 154, 260, 325, 595 |
| BssAI | RCCGGY | 4 cut(s) | 154, 260, 325, 595 |
| BssECI | CCNNGG | 4 cut(s) | 12, 92, 192, 390 |
| BssHII | GCGCGC | 2 cut(s) | 38, 40 |
| BssMI | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| BssNI | GRCGYC | 1 cut(s) | 517 |
| BssSI | CACGAG | 1 cut(s) | 505 |
| Bst2BI | CACGAG | 1 cut(s) | 505 |
| Bst6I | CTCTTC | 2 cut(s) | 393, 418 |
| BstACI | GRCGYC | 1 cut(s) | 517 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 100, 177 |
| BstDSI | CCRYGG | 1 cut(s) | 192 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstFNI | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| BstH2I | RGCGCY | 5 cut(s) | 20, 296, 471, 520, 572 |
| BstKTI | GATC | 5 cut(s) | 65, 313, 360, 372, 591 |
| BstMBI | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| BstMCI | CGRYCG | 1 cut(s) | 596 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 46, 145, 284, 331, 335, 465, 516, 523, 592 |
| BstNSI | RCATGY | 1 cut(s) | 148 |
| BstSCI | CCNGG | 2 cut(s) | 12, 360 |
| BstSLI | GKGCMC | 1 cut(s) | 117 |
| BstUI | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| BstZI | CGGCCG | 1 cut(s) | 593 |
| Bsu15I | ATCGAT | 1 cut(s) | 186 |
| BsuRI | GGCC | 6 cut(s) | 49, 115, 127, 249, 353, 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 186 |
| BtgI | CCRYGG | 1 cut(s) | 192 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtuMI | TCGCGA | 1 cut(s) | 526 |
| Cfr10I | RCCGGY | 4 cut(s) | 154, 260, 325, 595 |
| Cfr13I | GGNCC | 8 cut(s) | 113, 114, 125, 201, 225, 248, 352, 551 |
| ClaI | ATCGAT | 1 cut(s) | 186 |
| CspAI | ACCGGT | 1 cut(s) | 154 |
| CviAII | CATG | 1 cut(s) | 145 |
| DdeI | CTNAG | 2 cut(s) | 100, 177 |
| DinI | GGCGCC | 1 cut(s) | 518 |
| DpnI | GATC | 5 cut(s) | 64, 312, 359, 371, 590 |
| DpnII | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| EaeI | YGGCCR | 1 cut(s) | 593 |
| EagI | CGGCCG | 1 cut(s) | 593 |
| Eam1104I | CTCTTC | 2 cut(s) | 393, 418 |
| EarI | CTCTTC | 2 cut(s) | 393, 418 |
| EciI | GGCGGA | 3 cut(s) | 43, 312, 523 |
| EclXI | CGGCCG | 1 cut(s) | 593 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco32I | GATATC | 1 cut(s) | 79 |
| Eco47I | GGWCC | 3 cut(s) | 201, 225, 551 |
| Eco52I | CGGCCG | 1 cut(s) | 593 |
| Eco88I | CYCGRG | 2 cut(s) | 122, 389 |
| EcoO109I | RGGNCCY | 2 cut(s) | 114, 248 |
| EcoRV | GATATC | 1 cut(s) | 79 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| EgeI | GGCGCC | 1 cut(s) | 518 |
| EheI | GGCGCC | 1 cut(s) | 518 |
| FaeI | CATG | 1 cut(s) | 148 |
| FaiI | YATR | 5 cut(s) | 107, 146, 216, 374, 429 |
| FaqI | GGGAC | 1 cut(s) | 214 |
| FatI | CATG | 1 cut(s) | 144 |
| FauI | CCCGC | 1 cut(s) | 304 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 89, 135, 493, 572 |
| FokI | GGATG | 1 cut(s) | 431 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 89, 135, 493, 572 |
| FspBI | CTAG | 1 cut(s) | 240 |
| GluI | GCNGC | 5 cut(s) | 57, 89, 135, 493, 572 |
| HaeII | RGCGCY | 5 cut(s) | 20, 296, 471, 520, 572 |
| HaeIII | GGCC | 6 cut(s) | 49, 115, 127, 249, 353, 595 |
| HapII | CCGG | 7 cut(s) | 14, 155, 261, 326, 362, 592, 596 |
| Hin1I | GRCGYC | 1 cut(s) | 517 |
| Hin1II | CATG | 1 cut(s) | 148 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HinfI | GANTC | 4 cut(s) | 5, 302, 474, 544 |
| HpaII | CCGG | 7 cut(s) | 14, 155, 261, 326, 362, 592, 596 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 196 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 307, 418 |
| Hpy188III | TCNNGA | 3 cut(s) | 483, 498, 525 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 196 |
| Hpy99I | CGWCG | 1 cut(s) | 489 |
| HpyAV | CCTTC | 6 cut(s) | 60, 128, 203, 239, 260, 531 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 367 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 46, 145, 284, 331, 335, 465, 516, 523, 592 |
| HpyF3I | CTNAG | 2 cut(s) | 100, 177 |
| Hsp92I | GRCGYC | 1 cut(s) | 517 |
| Hsp92II | CATG | 1 cut(s) | 148 |
| KasI | GGCGCC | 1 cut(s) | 516 |
| KroI | GCCGGC | 3 cut(s) | 260, 325, 595 |
| KroNI | GCCGGC | 3 cut(s) | 262, 327, 597 |
| Kzo9I | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| LmnI | GCTCC | 5 cut(s) | 24, 77, 283, 427, 446 |
| LpnPI | CCDG | 7 cut(s) | 27, 168, 274, 339, 375, 567, 605 |
| LweI | GCATC | 3 cut(s) | 178, 409, 479 |
| MaeI | CTAG | 1 cut(s) | 240 |
| MalI | GATC | 5 cut(s) | 64, 312, 359, 371, 590 |
| MboI | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| MboII | GAAGA | 4 cut(s) | 218, 405, 410, 575 |
| MfeI | CAATTG | 1 cut(s) | 347 |
| MhlI | GDGCHC | 1 cut(s) | 117 |
| MluCI | AATT | 2 cut(s) | 83, 347 |
| Mly113I | GGCGCC | 1 cut(s) | 517 |
| MlyI | GAGTC | 2 cut(s) | 311, 468 |
| MreI | CGCCGGCG | 2 cut(s) | 260, 325 |
| MroNI | GCCGGC | 3 cut(s) | 260, 325, 595 |
| MspI | CCGG | 7 cut(s) | 14, 155, 261, 326, 362, 592, 596 |
| MspR9I | CCNGG | 2 cut(s) | 14, 362 |
| MunI | CAATTG | 1 cut(s) | 347 |
| Mva1269I | GAATGC | 1 cut(s) | 411 |
| MvnI | CGCG | 6 cut(s) | 40, 42, 59, 61, 137, 526 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 46, 145, 284, 331, 335, 465, 516, 523, 592 |
| NaeI | GCCGGC | 3 cut(s) | 262, 327, 597 |
| NarI | GGCGCC | 1 cut(s) | 517 |
| NciI | CCSGG | 2 cut(s) | 14, 362 |
| NdeII | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| NgoMIV | GCCGGC | 3 cut(s) | 260, 325, 595 |
| NlaIII | CATG | 1 cut(s) | 148 |
| NlaIV | GGNNCC | 7 cut(s) | 115, 116, 202, 250, 354, 435, 518 |
| NmeAIII | GCCGAG | 2 cut(s) | 117, 325 |
| NruI | TCGCGA | 1 cut(s) | 526 |
| NspI | RCATGY | 1 cut(s) | 148 |
| PaeI | GCATGC | 1 cut(s) | 148 |
| PauI | GCGCGC | 2 cut(s) | 38, 40 |
| PctI | GAATGC | 1 cut(s) | 411 |
| PdiI | GCCGGC | 3 cut(s) | 262, 327, 597 |
| PfeI | GAWTC | 2 cut(s) | 5, 544 |
| PinAI | ACCGGT | 1 cut(s) | 154 |
| PkrI | GCNGC | 5 cut(s) | 58, 90, 136, 494, 573 |
| PleI | GAGTC | 2 cut(s) | 310, 468 |
| PluTI | GGCGCC | 1 cut(s) | 520 |
| PpsI | GAGTC | 2 cut(s) | 310, 468 |
| PspN4I | GGNNCC | 7 cut(s) | 115, 116, 202, 250, 354, 435, 518 |
| PspOMI | GGGCCC | 1 cut(s) | 113 |
| PspPI | GGNCC | 8 cut(s) | 113, 114, 125, 201, 225, 248, 352, 551 |
| PteI | GCGCGC | 2 cut(s) | 38, 40 |
| RruI | TCGCGA | 1 cut(s) | 526 |
| SatI | GCNGC | 5 cut(s) | 57, 89, 135, 493, 572 |
| Sau3AI | GATC | 5 cut(s) | 62, 310, 357, 369, 588 |
| Sau96I | GGNCC | 8 cut(s) | 113, 114, 125, 201, 225, 248, 352, 551 |
| SchI | GAGTC | 2 cut(s) | 311, 468 |
| ScrFI | CCNGG | 2 cut(s) | 14, 362 |
| SduI | GDGCHC | 1 cut(s) | 117 |
| SetI | ASST | 6 cut(s) | 165, 322, 386, 396, 443, 506 |
| SfaNI | GCATC | 3 cut(s) | 178, 409, 479 |
| SfoI | GGCGCC | 1 cut(s) | 518 |
| SgrAI | CRCCGGYG | 2 cut(s) | 260, 325 |
| SinI | GGWCC | 3 cut(s) | 201, 225, 551 |
| SmlI | CTYRAG | 2 cut(s) | 229, 496 |
| SmoI | CTYRAG | 2 cut(s) | 229, 496 |
| SphI | GCATGC | 1 cut(s) | 148 |
| Sse9I | AATT | 2 cut(s) | 83, 347 |
| SspDI | GGCGCC | 1 cut(s) | 516 |
| SspMI | CTAG | 1 cut(s) | 240 |
| StyD4I | CCNGG | 2 cut(s) | 12, 360 |
| TaqI | TCGA | 2 cut(s) | 81, 186 |
| TaqII | GACCGA | 1 cut(s) | 218 |
| TasI | AATT | 2 cut(s) | 83, 347 |
| TauI | GCSGC | 5 cut(s) | 59, 91, 137, 495, 574 |
| TfiI | GAWTC | 2 cut(s) | 5, 544 |
| VpaK11BI | GGWCC | 3 cut(s) | 201, 225, 551 |
| XceI | RCATGY | 1 cut(s) | 148 |
| XspI | CTAG | 1 cut(s) | 240 |