Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 666 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1674, 2202 |
| Acc16I | TGCGCA | 2 cut(s) | 1872, 2370 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 269, 1955 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 425, 1502 |
| AccBSI | CCGCTC | 3 cut(s) | 215, 442, 2357 |
| AccIII | TCCGGA | 1 cut(s) | 1511 |
| AclWI | GGATC | 4 cut(s) | 905, 907, 920, 2009 |
| AcoI | YGGCCR | 6 cut(s) | 183, 302, 499, 1504, 1899, 2358 |
| AcsI | RAATTY | 1 cut(s) | 722 |
| AcyI | GRCGYC | 2 cut(s) | 189, 1224 |
| AdeI | CACNNNGTG | 1 cut(s) | 425 |
| AfaI | GTAC | 7 cut(s) | 710, 848, 1010, 1049, 1083, 2151, 2258 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AflII | CTTAAG | 1 cut(s) | 1604 |
| AgsI | TTSAA | 6 cut(s) | 259, 904, 1112, 1415, 1550, 2045 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 909, 941 |
| AluBI | AGCT | 8 cut(s) | 328, 968, 1103, 1360, 1540, 1707, 2087, 2144 |
| AluI | AGCT | 8 cut(s) | 328, 968, 1103, 1360, 1540, 1707, 2087, 2144 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| Alw26I | GTCTC | 2 cut(s) | 101, 866 |
| AlwI | GGATC | 4 cut(s) | 905, 907, 920, 2009 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1502 |
| Ama87I | CYCGRG | 1 cut(s) | 1860 |
| Aor13HI | TCCGGA | 1 cut(s) | 1511 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| ApoI | RAATTY | 1 cut(s) | 722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1292, 1324 |
| AseI | ATTAAT | 1 cut(s) | 2346 |
| AsiSI | GCGATCGC | 1 cut(s) | 1150 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2061, 2300 |
| AsuC2I | CCSGG | 3 cut(s) | 1848, 2049, 2169 |
| AsuHPI | GGTGA | 7 cut(s) | 429, 505, 583, 589, 1733, 1991, 2296 |
| AvaI | CYCGRG | 1 cut(s) | 1860 |
| AvaII | GGWCC | 1 cut(s) | 1683 |
| BaeGI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BalI | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| BamHI | GGATCC | 1 cut(s) | 912 |
| BanI | GGYRCC | 3 cut(s) | 83, 269, 1955 |
| BanII | GRGCYC | 4 cut(s) | 832, 1429, 1467, 2251 |
| BauI | CACGAG | 2 cut(s) | 354, 1889 |
| BbsI | GAAGAC | 2 cut(s) | 200, 1529 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BccI | CCATC | 9 cut(s) | 150, 200, 313, 542, 548, 1226, 1325, 2186, 2294 |
| BceAI | ACGGC | 2 cut(s) | 795, 1211 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 1346, 1380, 1783, 1817 |
| BciVI | GTATCC | 1 cut(s) | 1241 |
| BclI | TGATCA | 1 cut(s) | 970 |
| BcnI | CCSGG | 3 cut(s) | 1848, 2049, 2169 |
| BcoDI | GTCTC | 2 cut(s) | 101, 866 |
| BfaI | CTAG | 2 cut(s) | 2127, 2386 |
| BfmI | CTRYAG | 2 cut(s) | 1141, 2324 |
| BfoI | RGCGCY | 2 cut(s) | 630, 1754 |
| BfrI | CTTAAG | 1 cut(s) | 1604 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BfuI | GTATCC | 1 cut(s) | 1241 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BlpI | GCTNAGC | 1 cut(s) | 992 |
| BmcAI | AGTACT | 3 cut(s) | 710, 1083, 2258 |
| Bme18I | GGWCC | 1 cut(s) | 1683 |
| BmeT110I | CYCGRG | 1 cut(s) | 1860 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmrI | ACTGGG | 2 cut(s) | 1094, 1814 |
| BmsI | GCATC | 7 cut(s) | 87, 871, 888, 1053, 1375, 1797, 2246 |
| BmuI | ACTGGG | 2 cut(s) | 1094, 1814 |
| BpiI | GAAGAC | 2 cut(s) | 200, 1529 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1416, 1448 |
| BpmI | CTGGAG | 5 cut(s) | 1306, 1418, 1455, 1479, 2273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2115 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 992 |
| BpuEI | CTTGAG | 3 cut(s) | 1672, 2174, 2281 |
| BpuMI | CCSGG | 3 cut(s) | 1848, 2049, 2169 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsaBI | GATNNNNATC | 3 cut(s) | 23, 1572, 1880 |
| BsaHI | GRCGYC | 2 cut(s) | 189, 1224 |
| BsaWI | WCCGGW | 1 cut(s) | 1511 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 623, 653 |
| Bse118I | RCCGGY | 3 cut(s) | 686, 1680, 1976 |
| Bse8I | GATNNNNATC | 3 cut(s) | 23, 1572, 1880 |
| BseAI | TCCGGA | 1 cut(s) | 1511 |
| BseCI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BseJI | GATNNNNATC | 3 cut(s) | 23, 1572, 1880 |
| BseMII | CTCAG | 5 cut(s) | 1006, 1230, 1368, 2106, 2283 |
| BsePI | GCGCGC | 2 cut(s) | 1152, 1154 |
| BseRI | GAGGAG | 6 cut(s) | 116, 730, 1008, 1125, 1392, 1699 |
| BseSI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 2358 |
| BseYI | CCCAGC | 3 cut(s) | 160, 1099, 1972 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1285I | CGRYCG | 5 cut(s) | 186, 687, 1150, 1716, 2361 |
| BshNI | GGYRCC | 3 cut(s) | 83, 269, 1955 |
| BshVI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsiEI | CGRYCG | 5 cut(s) | 186, 687, 1150, 1716, 2361 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1860 |
| BsiSI | CCGG | 9 cut(s) | 182, 687, 1406, 1512, 1681, 1848, 1977, 2048, 2169 |
| BslFI | GGGAC | 3 cut(s) | 266, 1249, 2199 |
| BsmAI | GTCTC | 2 cut(s) | 101, 866 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 3 cut(s) | 266, 1249, 2199 |
| BsmI | GAATGC | 2 cut(s) | 90, 1037 |
| BsoBI | CYCGRG | 1 cut(s) | 1860 |
| Bsp1286I | GDGCHC | 8 cut(s) | 88, 274, 300, 678, 832, 1429, 1467, 2251 |
| Bsp13I | TCCGGA | 1 cut(s) | 1511 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 992 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 6 cut(s) | 342, 942, 1313, 1461, 1793, 2277 |
| BspCNI | CTCAG | 5 cut(s) | 1005, 1231, 1369, 2107, 2284 |
| BspDI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BspEI | TCCGGA | 1 cut(s) | 1511 |
| BspHI | TCATGA | 1 cut(s) | 2080 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 4 cut(s) | 905, 907, 920, 2009 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 269, 1955 |
| BspTI | CTTAAG | 1 cut(s) | 1604 |
| BsrBI | CCGCTC | 3 cut(s) | 215, 442, 2357 |
| BsrFI | RCCGGY | 3 cut(s) | 686, 1680, 1976 |
| BssAI | RCCGGY | 3 cut(s) | 686, 1680, 1976 |
| BssHII | GCGCGC | 2 cut(s) | 1152, 1154 |
| BssNI | GRCGYC | 2 cut(s) | 189, 1224 |
| BssSI | CACGAG | 2 cut(s) | 354, 1889 |
| BssT1I | CCWWGG | 2 cut(s) | 606, 1596 |
| Bst2BI | CACGAG | 2 cut(s) | 354, 1889 |
| Bst4CI | ACNGT | 6 cut(s) | 206, 425, 635, 651, 794, 1528 |
| Bst6I | CTCTTC | 2 cut(s) | 1313, 1564 |
| BstACI | GRCGYC | 2 cut(s) | 189, 1224 |
| BstAFI | CTTAAG | 1 cut(s) | 1604 |
| BstDEI | CTNAG | 6 cut(s) | 992, 1213, 1239, 1377, 2115, 2292 |
| BstDSI | CCRYGG | 5 cut(s) | 606, 647, 1227, 1637, 1755 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 822, 2022 |
| BstH2I | RGCGCY | 2 cut(s) | 630, 1754 |
| BstMAI | GTCTC | 2 cut(s) | 101, 866 |
| BstMCI | CGRYCG | 5 cut(s) | 186, 687, 1150, 1716, 2361 |
| BstSFI | CTRYAG | 2 cut(s) | 1141, 2324 |
| BstSLI | GKGCMC | 3 cut(s) | 88, 274, 300 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 1529 |
| BstX2I | RGATCY | 3 cut(s) | 358, 897, 912 |
| BstYI | RGATCY | 3 cut(s) | 358, 897, 912 |
| BstZI | CGGCCG | 2 cut(s) | 183, 2358 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsuI | GTATCC | 1 cut(s) | 1241 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BtgI | CCRYGG | 5 cut(s) | 606, 647, 1227, 1637, 1755 |
| BtgZI | GCGATG | 3 cut(s) | 178, 957, 1774 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsI | GCAGTG | 1 cut(s) | 1935 |
| BtuMI | TCGCGA | 6 cut(s) | 342, 942, 1313, 1461, 1793, 2277 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1502 |
| CciI | TCATGA | 1 cut(s) | 2080 |
| CciNI | GCGGCCGC | 1 cut(s) | 2358 |
| Cfr10I | RCCGGY | 3 cut(s) | 686, 1680, 1976 |
| ClaI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| CseI | GACGC | 3 cut(s) | 197, 1232, 1821 |
| Csp6I | GTAC | 7 cut(s) | 709, 847, 1009, 1048, 1082, 2150, 2257 |
| CviAII | CATG | 5 cut(s) | 572, 607, 617, 2012, 2081 |
| CviQI | GTAC | 7 cut(s) | 709, 847, 1009, 1048, 1082, 2150, 2257 |
| DdeI | CTNAG | 6 cut(s) | 992, 1213, 1239, 1377, 2115, 2292 |
| DraIII | CACNNNGTG | 1 cut(s) | 425 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1674, 2202 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1674, 2202 |
| EaeI | YGGCCR | 6 cut(s) | 183, 302, 499, 1504, 1899, 2358 |
| EagI | CGGCCG | 2 cut(s) | 183, 2358 |
| Eam1104I | CTCTTC | 2 cut(s) | 1313, 1564 |
| EarI | CTCTTC | 2 cut(s) | 1313, 1564 |
| EciI | GGCGGA | 1 cut(s) | 705 |
| EclXI | CGGCCG | 2 cut(s) | 183, 2358 |
| Eco130I | CCWWGG | 2 cut(s) | 606, 1596 |
| Eco24I | GRGCYC | 4 cut(s) | 832, 1429, 1467, 2251 |
| Eco32I | GATATC | 2 cut(s) | 1178, 2221 |
| Eco47I | GGWCC | 1 cut(s) | 1683 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 2358 |
| Eco88I | CYCGRG | 1 cut(s) | 1860 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 822, 2022 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRV | GATATC | 2 cut(s) | 1178, 2221 |
| EcoT14I | CCWWGG | 2 cut(s) | 606, 1596 |
| EcoT22I | ATGCAT | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 4 cut(s) | 832, 1429, 1467, 2251 |
| ErhI | CCWWGG | 2 cut(s) | 606, 1596 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 5 cut(s) | 575, 610, 620, 2015, 2084 |
| FaqI | GGGAC | 3 cut(s) | 266, 1249, 2199 |
| FatI | CATG | 5 cut(s) | 571, 606, 616, 2011, 2080 |
| FauI | CCCGC | 4 cut(s) | 95, 174, 220, 960 |
| FbaI | TGATCA | 1 cut(s) | 970 |
| FriOI | GRGCYC | 4 cut(s) | 832, 1429, 1467, 2251 |
| FspBI | CTAG | 2 cut(s) | 2127, 2386 |
| FspI | TGCGCA | 2 cut(s) | 1872, 2370 |
| GsaI | CCCAGC | 3 cut(s) | 164, 1103, 1976 |
| GsuI | CTGGAG | 5 cut(s) | 1306, 1418, 1455, 1479, 2273 |
| HaeII | RGCGCY | 2 cut(s) | 630, 1754 |
| HapII | CCGG | 9 cut(s) | 182, 687, 1406, 1512, 1681, 1848, 1977, 2048, 2169 |
| HgaI | GACGC | 3 cut(s) | 197, 1232, 1821 |
| Hin1I | GRCGYC | 2 cut(s) | 189, 1224 |
| Hin1II | CATG | 5 cut(s) | 575, 610, 620, 2015, 2084 |
| HincII | GTYRAC | 2 cut(s) | 1292, 1993 |
| HindII | GTYRAC | 2 cut(s) | 1292, 1993 |
| HpaI | GTTAAC | 1 cut(s) | 1993 |
| HpaII | CCGG | 9 cut(s) | 182, 687, 1406, 1512, 1681, 1848, 1977, 2048, 2169 |
| HphI | GGTGA | 7 cut(s) | 429, 505, 583, 589, 1733, 1991, 2296 |
| Hpy166II | GTNNAC | 3 cut(s) | 1292, 1993, 2304 |
| Hpy188I | TCNGA | 7 cut(s) | 152, 239, 1188, 1378, 1564, 1621, 1837 |
| Hpy8I | GTNNAC | 3 cut(s) | 1292, 1993, 2304 |
| HpyCH4III | ACNGT | 6 cut(s) | 206, 425, 635, 651, 794, 1528 |
| HpyCH4IV | ACGT | 2 cut(s) | 147, 2203 |
| HpyCH4V | TGCA | 8 cut(s) | 571, 735, 798, 840, 862, 1388, 1804, 1825 |
| HpyF3I | CTNAG | 6 cut(s) | 992, 1213, 1239, 1377, 2115, 2292 |
| HpySE526I | ACGT | 2 cut(s) | 147, 2203 |
| Hsp92I | GRCGYC | 2 cut(s) | 189, 1224 |
| Hsp92II | CATG | 5 cut(s) | 575, 610, 620, 2015, 2084 |
| Kpn2I | TCCGGA | 1 cut(s) | 1511 |
| Ksp22I | TGATCA | 1 cut(s) | 970 |
| KspAI | GTTAAC | 1 cut(s) | 1993 |
| LmnI | GCTCC | 9 cut(s) | 10, 325, 644, 673, 827, 1108, 1537, 1712, 2074 |
| LweI | GCATC | 7 cut(s) | 87, 871, 888, 1053, 1375, 1797, 2246 |
| MaeI | CTAG | 2 cut(s) | 2127, 2386 |
| MaeII | ACGT | 2 cut(s) | 147, 2203 |
| MaeIII | GTNAC | 2 cut(s) | 589, 1933 |
| MauBI | CGCGCGCG | 1 cut(s) | 1152 |
| MbiI | CCGCTC | 3 cut(s) | 215, 442, 2357 |
| MfeI | CAATTG | 2 cut(s) | 1279, 1805 |
| MflI | RGATCY | 3 cut(s) | 358, 897, 912 |
| MhlI | GDGCHC | 8 cut(s) | 88, 274, 300, 678, 832, 1429, 1467, 2251 |
| MlsI | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| MluCI | AATT | 9 cut(s) | 131, 578, 693, 722, 1279, 1455, 1695, 1805, 2318 |
| MluNI | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| MlyI | GAGTC | 8 cut(s) | 167, 238, 578, 760, 1297, 1484, 2190, 2221 |
| MmeI | TCCRAC | 3 cut(s) | 130, 1587, 2224 |
| Mox20I | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| Mph1103I | ATGCAT | 1 cut(s) | 864 |
| MroI | TCCGGA | 1 cut(s) | 1511 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2061, 2300 |
| MscI | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| MseI | TTAA | 3 cut(s) | 1605, 1992, 2346 |
| Msp20I | TGGCCA | 3 cut(s) | 304, 501, 1506 |
| MspA1I | CMGCKG | 1 cut(s) | 968 |
| MspCI | CTTAAG | 1 cut(s) | 1604 |
| MspI | CCGG | 9 cut(s) | 182, 687, 1406, 1512, 1681, 1848, 1977, 2048, 2169 |
| MunI | CAATTG | 2 cut(s) | 1279, 1805 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 1037 |
| NciI | CCSGG | 3 cut(s) | 1848, 2049, 2169 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NlaIII | CATG | 5 cut(s) | 575, 610, 620, 2015, 2084 |
| NmuCI | GTSAC | 2 cut(s) | 589, 1933 |
| NotI | GCGGCCGC | 1 cut(s) | 2358 |
| NruI | TCGCGA | 6 cut(s) | 342, 942, 1313, 1461, 1793, 2277 |
| NsbI | TGCGCA | 2 cut(s) | 1872, 2370 |
| NsiI | ATGCAT | 1 cut(s) | 864 |
| PaeR7I | CTCGAG | 1 cut(s) | 1860 |
| PagI | TCATGA | 1 cut(s) | 2080 |
| PauI | GCGCGC | 2 cut(s) | 1152, 1154 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1672, 2304 |
| PctI | GAATGC | 2 cut(s) | 90, 1037 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2061, 2300 |
| PfeI | GAWTC | 7 cut(s) | 277, 1095, 1119, 1553, 1909, 2105, 2329 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 425, 1502 |
| PfoI | TCCNGGA | 1 cut(s) | 2167 |
| Ple19I | CGATCG | 1 cut(s) | 1150 |
| PleI | GAGTC | 8 cut(s) | 167, 238, 578, 760, 1296, 1483, 2190, 2220 |
| PpsI | GAGTC | 8 cut(s) | 167, 238, 578, 760, 1296, 1483, 2190, 2220 |
| PshBI | ATTAAT | 1 cut(s) | 2346 |
| PsiI | TTATAA | 1 cut(s) | 666 |
| PspFI | CCCAGC | 3 cut(s) | 160, 1099, 1972 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1502 |
| PsuI | RGATCY | 3 cut(s) | 358, 897, 912 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| PteI | GCGCGC | 2 cut(s) | 1152, 1154 |
| PvuI | CGATCG | 1 cut(s) | 1150 |
| PvuII | CAGCTG | 1 cut(s) | 968 |
| RgaI | GCGATCGC | 1 cut(s) | 1150 |
| RruI | TCGCGA | 6 cut(s) | 342, 942, 1313, 1461, 1793, 2277 |
| RsaI | GTAC | 7 cut(s) | 710, 848, 1010, 1049, 1083, 2151, 2258 |
| RsaNI | GTAC | 7 cut(s) | 709, 847, 1009, 1048, 1082, 2150, 2257 |
| SaqAI | TTAA | 3 cut(s) | 1605, 1992, 2346 |
| ScaI | AGTACT | 3 cut(s) | 710, 1083, 2258 |
| SchI | GAGTC | 8 cut(s) | 167, 238, 578, 760, 1297, 1484, 2190, 2221 |
| SduI | GDGCHC | 8 cut(s) | 88, 274, 300, 678, 832, 1429, 1467, 2251 |
| SfaAI | GCGATCGC | 1 cut(s) | 1150 |
| SfaNI | GCATC | 7 cut(s) | 87, 871, 888, 1053, 1375, 1797, 2246 |
| SfcI | CTRYAG | 2 cut(s) | 1141, 2324 |
| Sfr274I | CTCGAG | 1 cut(s) | 1860 |
| SgfI | GCGATCGC | 1 cut(s) | 1150 |
| SinI | GGWCC | 1 cut(s) | 1683 |
| SlaI | CTCGAG | 1 cut(s) | 1860 |
| SmlI | CTYRAG | 5 cut(s) | 1604, 1687, 1860, 2153, 2260 |
| SmoI | CTYRAG | 5 cut(s) | 1604, 1687, 1860, 2153, 2260 |
| Sse9I | AATT | 9 cut(s) | 131, 578, 693, 722, 1279, 1455, 1695, 1805, 2318 |
| SspMI | CTAG | 2 cut(s) | 2127, 2386 |
| StyI | CCWWGG | 2 cut(s) | 606, 1596 |
| TaaI | ACNGT | 6 cut(s) | 206, 425, 635, 651, 794, 1528 |
| TaiI | ACGT | 2 cut(s) | 150, 2206 |
| TaqII | GACCGA | 1 cut(s) | 1702 |
| TasI | AATT | 9 cut(s) | 131, 578, 693, 722, 1279, 1455, 1695, 1805, 2318 |
| TatI | WGTACW | 3 cut(s) | 708, 1081, 2256 |
| TauI | GCSGC | 4 cut(s) | 380, 999, 2360, 2363 |
| TfiI | GAWTC | 7 cut(s) | 277, 1095, 1119, 1553, 1909, 2105, 2329 |
| Tru1I | TTAA | 3 cut(s) | 1605, 1992, 2346 |
| Tru9I | TTAA | 3 cut(s) | 1605, 1992, 2346 |
| TseFI | GTSAC | 2 cut(s) | 589, 1933 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 1933 |
| TspDTI | ATGAA | 9 cut(s) | 401, 715, 1665, 2051, 2097, 2097, 2196, 2331, 2364 |
| TspGWI | ACGGA | 7 cut(s) | 338, 926, 1131, 1157, 1550, 2230, 2356 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 425, 1502 |
| Vha464I | CTTAAG | 1 cut(s) | 1604 |
| VpaK11BI | GGWCC | 1 cut(s) | 1683 |
| VspI | ATTAAT | 1 cut(s) | 2346 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 822, 2022 |
| XapI | RAATTY | 1 cut(s) | 722 |
| XbaI | TCTAGA | 1 cut(s) | 2126 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1442 |
| XhoI | CTCGAG | 1 cut(s) | 1860 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2061, 2300 |
| XspI | CTAG | 2 cut(s) | 2127, 2386 |
| ZrmI | AGTACT | 3 cut(s) | 710, 1083, 2258 |
| Zsp2I | ATGCAT | 1 cut(s) | 864 |