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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 45, 54, 107 |
| AccIII | TCCGGA | 1 cut(s) | 397 |
| AciI | CCGC | 3 cut(s) | 17, 80, 235 |
| AclWI | GGATC | 4 cut(s) | 119, 128, 382, 408 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 235, 290, 397, 404 |
| AgeI | ACCGGT | 1 cut(s) | 259 |
| AgsI | TTSAA | 2 cut(s) | 255, 366 |
| AjnI | CCWGG | 1 cut(s) | 159 |
| AluBI | AGCT | 2 cut(s) | 67, 302 |
| AluI | AGCT | 2 cut(s) | 67, 302 |
| Alw26I | GTCTC | 1 cut(s) | 29 |
| AlwI | GGATC | 4 cut(s) | 119, 128, 382, 408 |
| Ama87I | CYCGRG | 1 cut(s) | 391 |
| Aor13HI | TCCGGA | 1 cut(s) | 397 |
| AsiGI | ACCGGT | 1 cut(s) | 259 |
| AspLEI | GCGC | 2 cut(s) | 45, 324 |
| AsuC2I | CCSGG | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 1 cut(s) | 375 |
| AvaI | CYCGRG | 1 cut(s) | 391 |
| BbsI | GAAGAC | 1 cut(s) | 243 |
| BceAI | ACGGC | 1 cut(s) | 104 |
| BciT130I | CCWGG | 1 cut(s) | 161 |
| BciVI | GTATCC | 1 cut(s) | 330 |
| BcnI | CCSGG | 1 cut(s) | 284 |
| BcoDI | GTCTC | 1 cut(s) | 29 |
| BfoI | RGCGCY | 1 cut(s) | 325 |
| BfuI | GTATCC | 1 cut(s) | 330 |
| BisI | GCNGC | 1 cut(s) | 80 |
| BlsI | GCNGC | 1 cut(s) | 81 |
| Bme1390I | CCNGG | 2 cut(s) | 161, 284 |
| BmeT110I | CYCGRG | 1 cut(s) | 391 |
| BmrFI | CCNGG | 2 cut(s) | 161, 284 |
| BpiI | GAAGAC | 1 cut(s) | 243 |
| BpuMI | CCSGG | 1 cut(s) | 284 |
| Bsa29I | ATCGAT | 1 cut(s) | 123 |
| BsaI | GGTCTC | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 2 cut(s) | 116, 128 |
| BsaWI | WCCGGW | 2 cut(s) | 259, 397 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 235, 290, 397, 404 |
| Bse118I | RCCGGY | 1 cut(s) | 259 |
| BseAI | TCCGGA | 1 cut(s) | 397 |
| BseBI | CCWGG | 1 cut(s) | 161 |
| BseCI | ATCGAT | 1 cut(s) | 123 |
| BseDI | CCNNGG | 2 cut(s) | 116, 128 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 235, 290, 397, 404 |
| BseYI | CCCAGC | 1 cut(s) | 318 |
| Bsh1236I | CGCG | 3 cut(s) | 45, 54, 107 |
| Bsh1285I | CGRYCG | 1 cut(s) | 264 |
| BshTI | ACCGGT | 1 cut(s) | 259 |
| BshVI | ATCGAT | 1 cut(s) | 123 |
| BsiEI | CGRYCG | 1 cut(s) | 264 |
| BsiHKCI | CYCGRG | 1 cut(s) | 391 |
| BsiSI | CCGG | 3 cut(s) | 260, 284, 398 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 235, 290, 397, 404 |
| BsmAI | GTCTC | 1 cut(s) | 29 |
| Bso31I | GGTCTC | 1 cut(s) | 29 |
| BsoBI | CYCGRG | 1 cut(s) | 391 |
| Bsp13I | TCCGGA | 1 cut(s) | 397 |
| Bsp143I | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| Bsp19I | CCATGG | 1 cut(s) | 128 |
| BspACI | CCGC | 3 cut(s) | 17, 80, 235 |
| BspDI | ATCGAT | 1 cut(s) | 123 |
| BspEI | TCCGGA | 1 cut(s) | 397 |
| BspFNI | CGCG | 3 cut(s) | 45, 54, 107 |
| BspPI | GGATC | 4 cut(s) | 119, 128, 382, 408 |
| BspTNI | GGTCTC | 1 cut(s) | 29 |
| BsrFI | RCCGGY | 1 cut(s) | 259 |
| BssAI | RCCGGY | 1 cut(s) | 259 |
| BssECI | CCNNGG | 2 cut(s) | 116, 128 |
| BssMI | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| BssT1I | CCWWGG | 1 cut(s) | 128 |
| Bst2UI | CCWGG | 1 cut(s) | 161 |
| Bst6I | CTCTTC | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 47 |
| BstDSI | CCRYGG | 1 cut(s) | 128 |
| BstFNI | CGCG | 3 cut(s) | 45, 54, 107 |
| BstH2I | RGCGCY | 1 cut(s) | 325 |
| BstHHI | GCGC | 2 cut(s) | 45, 324 |
| BstKTI | GATC | 5 cut(s) | 123, 127, 157, 390, 403 |
| BstMAI | GTCTC | 1 cut(s) | 29 |
| BstMBI | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| BstMCI | CGRYCG | 1 cut(s) | 264 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 51, 88, 232 |
| BstNI | CCWGG | 1 cut(s) | 161 |
| BstSCI | CCNGG | 2 cut(s) | 159, 282 |
| BstUI | CGCG | 3 cut(s) | 45, 54, 107 |
| BstV2I | GAAGAC | 1 cut(s) | 243 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 287 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| Bsu15I | ATCGAT | 1 cut(s) | 123 |
| BsuI | GTATCC | 1 cut(s) | 330 |
| BsuTUI | ATCGAT | 1 cut(s) | 123 |
| BtgI | CCRYGG | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 1 cut(s) | 47 |
| CfoI | GCGC | 2 cut(s) | 45, 324 |
| Cfr10I | RCCGGY | 1 cut(s) | 259 |
| ClaI | ATCGAT | 1 cut(s) | 123 |
| CseI | GACGC | 1 cut(s) | 43 |
| CspAI | ACCGGT | 1 cut(s) | 259 |
| CviAII | CATG | 1 cut(s) | 129 |
| CviJI | RGCY | 4 cut(s) | 49, 67, 91, 302 |
| CviKI_1 | RGCY | 4 cut(s) | 49, 67, 91, 302 |
| DpnI | GATC | 5 cut(s) | 122, 126, 156, 389, 402 |
| DpnII | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| Eam1104I | CTCTTC | 1 cut(s) | 281 |
| EarI | CTCTTC | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 1 cut(s) | 128 |
| Eco31I | GGTCTC | 1 cut(s) | 29 |
| Eco88I | CYCGRG | 1 cut(s) | 391 |
| EcoRII | CCWGG | 1 cut(s) | 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 128 |
| ErhI | CCWWGG | 1 cut(s) | 128 |
| FaeI | CATG | 1 cut(s) | 132 |
| FaiI | YATR | 6 cut(s) | 9, 130, 169, 182, 209, 221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 260, 292 |
| FatI | CATG | 1 cut(s) | 128 |
| FauI | CCCGC | 2 cut(s) | 24, 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 1 cut(s) | 80 |
| GlaI | GCGC | 2 cut(s) | 44, 323 |
| GluI | GCNGC | 1 cut(s) | 80 |
| GsaI | CCCAGC | 1 cut(s) | 322 |
| HaeII | RGCGCY | 1 cut(s) | 325 |
| HapII | CCGG | 3 cut(s) | 260, 284, 398 |
| HgaI | GACGC | 1 cut(s) | 43 |
| HhaI | GCGC | 2 cut(s) | 45, 324 |
| Hin1II | CATG | 1 cut(s) | 132 |
| Hin6I | GCGC | 2 cut(s) | 43, 322 |
| HinP1I | GCGC | 2 cut(s) | 43, 322 |
| HincII | GTYRAC | 1 cut(s) | 111 |
| HindII | GTYRAC | 1 cut(s) | 111 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HinfI | GANTC | 1 cut(s) | 394 |
| HpaII | CCGG | 3 cut(s) | 260, 284, 398 |
| HphI | GGTGA | 1 cut(s) | 375 |
| Hpy166II | GTNNAC | 2 cut(s) | 97, 111 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 120, 336 |
| Hpy188III | TCNNGA | 4 cut(s) | 255, 265, 391, 398 |
| Hpy8I | GTNNAC | 2 cut(s) | 97, 111 |
| Hpy99I | CGWCG | 1 cut(s) | 246 |
| HpyAV | CCTTC | 1 cut(s) | 262 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 51, 88, 232 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Hsp92II | CATG | 1 cut(s) | 132 |
| HspAI | GCGC | 2 cut(s) | 43, 322 |
| Kpn2I | TCCGGA | 1 cut(s) | 397 |
| Kzo9I | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| LmnI | GCTCC | 2 cut(s) | 4, 231 |
| LpnPI | CCDG | 8 cut(s) | 53, 146, 173, 245, 273, 297, 332, 366 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MaeIII | GTNAC | 2 cut(s) | 163, 212 |
| MalI | GATC | 5 cut(s) | 122, 126, 156, 389, 402 |
| MboI | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| MboII | GAAGA | 4 cut(s) | 146, 149, 243, 268 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MluCI | AATT | 1 cut(s) | 71 |
| MlyI | GAGTC | 1 cut(s) | 403 |
| MnlI | CCTC | 3 cut(s) | 60, 126, 227 |
| MroI | TCCGGA | 1 cut(s) | 397 |
| MspI | CCGG | 3 cut(s) | 260, 284, 398 |
| MspR9I | CCNGG | 2 cut(s) | 161, 284 |
| MvaI | CCWGG | 1 cut(s) | 161 |
| MvnI | CGCG | 3 cut(s) | 45, 54, 107 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 51, 88, 232 |
| NciI | CCSGG | 1 cut(s) | 284 |
| NcoI | CCATGG | 1 cut(s) | 128 |
| NdeII | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| NlaIII | CATG | 1 cut(s) | 132 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 184 |
| PinAI | ACCGGT | 1 cut(s) | 259 |
| PkrI | GCNGC | 1 cut(s) | 81 |
| PleI | GAGTC | 1 cut(s) | 402 |
| PpsI | GAGTC | 1 cut(s) | 402 |
| Psp6I | CCWGG | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 318 |
| PspGI | CCWGG | 1 cut(s) | 159 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| SatI | GCNGC | 1 cut(s) | 80 |
| Sau3AI | GATC | 5 cut(s) | 120, 124, 154, 387, 400 |
| SchI | GAGTC | 1 cut(s) | 403 |
| ScrFI | CCNGG | 2 cut(s) | 161, 284 |
| SetI | ASST | 6 cut(s) | 69, 102, 219, 251, 273, 304 |
| Sse9I | AATT | 1 cut(s) | 71 |
| SsiI | CCGC | 3 cut(s) | 17, 80, 235 |
| StyD4I | CCNGG | 2 cut(s) | 159, 282 |
| StyI | CCWWGG | 1 cut(s) | 128 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TaqI | TCGA | 1 cut(s) | 123 |
| TaqII | GACCGA | 1 cut(s) | 53 |
| TasI | AATT | 1 cut(s) | 71 |
| TauI | GCSGC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 1 cut(s) | 156 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 287 |