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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 156, 728 |
| AccII | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| AccIII | TCCGGA | 1 cut(s) | 275 |
| AclWI | GGATC | 4 cut(s) | 605, 669, 682, 990 |
| AcoI | YGGCCR | 2 cut(s) | 189, 269 |
| AfaI | GTAC | 1 cut(s) | 328 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 181, 182, 267, 446, 538, 670, 775 |
| AgeI | ACCGGT | 1 cut(s) | 385 |
| AgsI | TTSAA | 1 cut(s) | 581 |
| AluBI | AGCT | 1 cut(s) | 468 |
| AluI | AGCT | 1 cut(s) | 468 |
| Alw21I | GWGCWC | 1 cut(s) | 961 |
| Alw26I | GTCTC | 1 cut(s) | 25 |
| AlwI | GGATC | 4 cut(s) | 605, 669, 682, 990 |
| Ama87I | CYCGRG | 2 cut(s) | 148, 215 |
| Aor13HI | TCCGGA | 1 cut(s) | 275 |
| AoxI | GGCC | 6 cut(s) | 184, 189, 269, 436, 723, 733 |
| ApaI | GGGCCC | 1 cut(s) | 188 |
| ApeKI | GCWGC | 1 cut(s) | 127 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 35, 35, 67 |
| AseI | ATTAAT | 1 cut(s) | 251 |
| AsiGI | ACCGGT | 1 cut(s) | 385 |
| AsiSI | GCGATCGC | 1 cut(s) | 243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 665 |
| AspLEI | GCGC | 6 cut(s) | 247, 381, 527, 553, 646, 821 |
| AspS9I | GGNCC | 5 cut(s) | 184, 185, 334, 437, 766 |
| AsuC2I | CCSGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| AsuNHI | GCTAGC | 1 cut(s) | 170 |
| AvaI | CYCGRG | 2 cut(s) | 148, 215 |
| AvaII | GGWCC | 2 cut(s) | 334, 766 |
| BaeGI | GKGCMC | 1 cut(s) | 188 |
| BamHI | GGATCC | 1 cut(s) | 674 |
| BanII | GRGCYC | 1 cut(s) | 188 |
| BauI | CACGAG | 1 cut(s) | 960 |
| BbsI | GAAGAC | 2 cut(s) | 128, 836 |
| Bbv12I | GWGCWC | 1 cut(s) | 961 |
| BbvI | GCAGC | 1 cut(s) | 114 |
| BccI | CCATC | 5 cut(s) | 284, 325, 626, 842, 848 |
| BceAI | ACGGC | 2 cut(s) | 256, 612 |
| BcgI | CGANNNNNNTGC | 7 cut(s) | 32, 109, 143, 410, 431, 444, 465 |
| BcnI | CCSGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| BcoDI | GTCTC | 1 cut(s) | 25 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BfoI | RGCGCY | 4 cut(s) | 382, 528, 554, 647 |
| BisI | GCNGC | 7 cut(s) | 128, 154, 413, 642, 656, 726, 733 |
| BlsI | GCNGC | 7 cut(s) | 129, 155, 414, 643, 657, 727, 734 |
| Bme1390I | CCNGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| Bme18I | GGWCC | 2 cut(s) | 334, 766 |
| BmeT110I | CYCGRG | 2 cut(s) | 148, 215 |
| BmgT120I | GGNCC | 5 cut(s) | 184, 185, 334, 437, 766 |
| BmiI | GGNNCC | 7 cut(s) | 72, 186, 301, 390, 439, 519, 676 |
| BmrFI | CCNGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| BmsI | GCATC | 3 cut(s) | 69, 493, 562 |
| BmtI | GCTAGC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 2 cut(s) | 128, 836 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 478, 510, 805, 837 |
| BpmI | CTGGAG | 1 cut(s) | 49 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BpuMI | CCSGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| BsaJI | CCNNGG | 1 cut(s) | 792 |
| BsaWI | WCCGGW | 3 cut(s) | 275, 385, 446 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 181, 182, 267, 446, 538, 670, 775 |
| Bse118I | RCCGGY | 3 cut(s) | 191, 267, 385 |
| Bse1I | ACTGG | 1 cut(s) | 864 |
| Bse3DI | GCAATG | 1 cut(s) | 878 |
| BseAI | TCCGGA | 1 cut(s) | 275 |
| BseDI | CCNNGG | 1 cut(s) | 792 |
| BseGI | GGATG | 4 cut(s) | 508, 840, 856, 942 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 181, 182, 267, 446, 538, 670, 775 |
| BseMI | GCAATG | 1 cut(s) | 878 |
| BseNI | ACTGG | 1 cut(s) | 864 |
| BseRI | GAGGAG | 2 cut(s) | 134, 673 |
| BseSI | GKGCMC | 1 cut(s) | 188 |
| BseX3I | CGGCCG | 2 cut(s) | 189, 269 |
| BseXI | GCAGC | 1 cut(s) | 114 |
| BsgI | GTGCAG | 1 cut(s) | 113 |
| Bsh1236I | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| Bsh1285I | CGRYCG | 4 cut(s) | 192, 243, 272, 928 |
| BshFI | GGCC | 6 cut(s) | 186, 191, 271, 438, 725, 735 |
| BshTI | ACCGGT | 1 cut(s) | 385 |
| BsiEI | CGRYCG | 4 cut(s) | 192, 243, 272, 928 |
| BsiHKAI | GWGCWC | 1 cut(s) | 961 |
| BsiHKCI | CYCGRG | 2 cut(s) | 148, 215 |
| BsiWI | CGTACG | 1 cut(s) | 326 |
| BslFI | GGGAC | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 181, 182, 267, 446, 538, 670, 775 |
| BsmAI | GTCTC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 1 cut(s) | 521 |
| BsnI | GGCC | 6 cut(s) | 186, 191, 271, 438, 725, 735 |
| BsoBI | CYCGRG | 2 cut(s) | 148, 215 |
| Bsp120I | GGGCCC | 1 cut(s) | 184 |
| Bsp1286I | GDGCHC | 2 cut(s) | 188, 961 |
| Bsp13I | TCCGGA | 1 cut(s) | 275 |
| Bsp143I | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| Bsp68I | TCGCGA | 2 cut(s) | 56, 609 |
| BspANI | GGCC | 6 cut(s) | 186, 191, 271, 438, 725, 735 |
| BspEI | TCCGGA | 1 cut(s) | 275 |
| BspFNI | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| BspHI | TCATGA | 1 cut(s) | 511 |
| BspLI | GGNNCC | 7 cut(s) | 72, 186, 301, 390, 439, 519, 676 |
| BspOI | GCTAGC | 1 cut(s) | 174 |
| BspPI | GGATC | 4 cut(s) | 605, 669, 682, 990 |
| BspQI | GCTCTTC | 1 cut(s) | 949 |
| BsrBI | CCGCTC | 2 cut(s) | 156, 728 |
| BsrDI | GCAATG | 1 cut(s) | 878 |
| BsrFI | RCCGGY | 3 cut(s) | 191, 267, 385 |
| BsrI | ACTGG | 1 cut(s) | 864 |
| BssAI | RCCGGY | 3 cut(s) | 191, 267, 385 |
| BssECI | CCNNGG | 1 cut(s) | 792 |
| BssMI | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| BssSI | CACGAG | 1 cut(s) | 960 |
| Bst2BI | CACGAG | 1 cut(s) | 960 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 5 cut(s) | 56, 327, 897, 941, 949 |
| BstC8I | GCNNGC | 6 cut(s) | 58, 112, 172, 422, 470, 730 |
| BstDEI | CTNAG | 1 cut(s) | 1008 |
| BstF5I | GGATG | 4 cut(s) | 508, 840, 856, 942 |
| BstFNI | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| BstH2I | RGCGCY | 4 cut(s) | 382, 528, 554, 647 |
| BstHHI | GCGC | 6 cut(s) | 247, 381, 527, 553, 646, 821 |
| BstKTI | GATC | 6 cut(s) | 243, 456, 613, 677, 928, 998 |
| BstMAI | GTCTC | 1 cut(s) | 25 |
| BstMBI | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| BstMCI | CGRYCG | 4 cut(s) | 192, 243, 272, 928 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 253, 421, 548, 652, 694 |
| BstSCI | CCNGG | 7 cut(s) | 181, 186, 348, 537, 762, 792, 843 |
| BstSLI | GKGCMC | 1 cut(s) | 188 |
| BstUI | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| BstV1I | GCAGC | 1 cut(s) | 114 |
| BstV2I | GAAGAC | 2 cut(s) | 128, 836 |
| BstX2I | RGATCY | 2 cut(s) | 674, 995 |
| BstYI | RGATCY | 2 cut(s) | 674, 995 |
| BstZI | CGGCCG | 2 cut(s) | 189, 269 |
| BsuRI | GGCC | 6 cut(s) | 186, 191, 271, 438, 725, 735 |
| BtgZI | GCGATG | 2 cut(s) | 303, 585 |
| BtsCI | GGATG | 4 cut(s) | 508, 840, 856, 942 |
| BtsI | GCAGTG | 1 cut(s) | 921 |
| BtsIMutI | CAGTG | 1 cut(s) | 921 |
| BtuMI | TCGCGA | 2 cut(s) | 56, 609 |
| Cac8I | GCNNGC | 6 cut(s) | 58, 112, 172, 422, 470, 730 |
| CciI | TCATGA | 1 cut(s) | 511 |
| CfoI | GCGC | 6 cut(s) | 247, 381, 527, 553, 646, 821 |
| Cfr10I | RCCGGY | 3 cut(s) | 191, 267, 385 |
| Cfr13I | GGNCC | 5 cut(s) | 184, 185, 334, 437, 766 |
| CpoI | CGGWCCG | 1 cut(s) | 766 |
| CseI | GACGC | 2 cut(s) | 133, 176 |
| Csp6I | GTAC | 1 cut(s) | 327 |
| CspAI | ACCGGT | 1 cut(s) | 385 |
| CspI | CGGWCCG | 1 cut(s) | 766 |
| CviAII | CATG | 1 cut(s) | 512 |
| CviQI | GTAC | 1 cut(s) | 327 |
| DdeI | CTNAG | 1 cut(s) | 1008 |
| DpnI | GATC | 6 cut(s) | 242, 455, 612, 676, 927, 997 |
| DpnII | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| EaeI | YGGCCR | 2 cut(s) | 189, 269 |
| EagI | CGGCCG | 2 cut(s) | 189, 269 |
| Eam1104I | CTCTTC | 5 cut(s) | 56, 327, 897, 941, 949 |
| EarI | CTCTTC | 5 cut(s) | 56, 327, 897, 941, 949 |
| EciI | GGCGGA | 2 cut(s) | 128, 733 |
| EclXI | CGGCCG | 2 cut(s) | 189, 269 |
| Eco24I | GRGCYC | 1 cut(s) | 188 |
| Eco32I | GATATC | 1 cut(s) | 80 |
| Eco47I | GGWCC | 2 cut(s) | 334, 766 |
| Eco52I | CGGCCG | 2 cut(s) | 189, 269 |
| Eco88I | CYCGRG | 2 cut(s) | 148, 215 |
| EcoRV | GATATC | 1 cut(s) | 80 |
| EcoT38I | GRGCYC | 1 cut(s) | 188 |
| FaeI | CATG | 1 cut(s) | 515 |
| FaiI | YATR | 7 cut(s) | 42, 361, 429, 458, 513, 971, 992 |
| FaqI | GGGAC | 1 cut(s) | 521 |
| FatI | CATG | 1 cut(s) | 511 |
| FauI | CCCGC | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 7 cut(s) | 128, 154, 413, 642, 656, 726, 733 |
| FokI | GGATG | 4 cut(s) | 515, 827, 863, 949 |
| FriOI | GRGCYC | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 7 cut(s) | 128, 154, 413, 642, 656, 726, 733 |
| FspBI | CTAG | 1 cut(s) | 171 |
| GlaI | GCGC | 6 cut(s) | 246, 380, 526, 552, 645, 820 |
| GluI | GCNGC | 7 cut(s) | 128, 154, 413, 642, 656, 726, 733 |
| GsuI | CTGGAG | 1 cut(s) | 49 |
| HaeII | RGCGCY | 4 cut(s) | 382, 528, 554, 647 |
| HaeIII | GGCC | 6 cut(s) | 186, 191, 271, 438, 725, 735 |
| HgaI | GACGC | 2 cut(s) | 133, 176 |
| HhaI | GCGC | 6 cut(s) | 247, 381, 527, 553, 646, 821 |
| Hin1II | CATG | 1 cut(s) | 515 |
| Hin6I | GCGC | 6 cut(s) | 245, 379, 525, 551, 644, 819 |
| HinP1I | GCGC | 6 cut(s) | 245, 379, 525, 551, 644, 819 |
| HinfI | GANTC | 7 cut(s) | 316, 443, 557, 584, 666, 814, 921 |
| Hpy166II | GTNNAC | 1 cut(s) | 1003 |
| Hpy188I | TCNGA | 5 cut(s) | 120, 502, 770, 778, 930 |
| Hpy188III | TCNNGA | 8 cut(s) | 55, 148, 217, 276, 512, 581, 608, 826 |
| Hpy8I | GTNNAC | 1 cut(s) | 1003 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 598 |
| HpyAV | CCTTC | 7 cut(s) | 347, 614, 707, 715, 857, 895, 927 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 4 cut(s) | 130, 431, 506, 871 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 253, 421, 548, 652, 694 |
| HpyF3I | CTNAG | 1 cut(s) | 1008 |
| Hsp92II | CATG | 1 cut(s) | 515 |
| HspAI | GCGC | 6 cut(s) | 245, 379, 525, 551, 644, 819 |
| Kpn2I | TCCGGA | 1 cut(s) | 275 |
| Kzo9I | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| LguI | GCTCTTC | 1 cut(s) | 949 |
| LmnI | GCTCC | 4 cut(s) | 161, 299, 651, 701 |
| Lsp1109I | GCAGC | 1 cut(s) | 114 |
| LweI | GCATC | 3 cut(s) | 69, 493, 562 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MaeIII | GTNAC | 1 cut(s) | 293 |
| MalI | GATC | 6 cut(s) | 242, 455, 612, 676, 927, 997 |
| MbiI | CCGCTC | 2 cut(s) | 156, 728 |
| MboI | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| MfeI | CAATTG | 2 cut(s) | 22, 432 |
| MflI | RGATCY | 2 cut(s) | 674, 995 |
| MhlI | GDGCHC | 2 cut(s) | 188, 961 |
| MluCI | AATT | 4 cut(s) | 22, 201, 432, 561 |
| MlyI | GAGTC | 3 cut(s) | 551, 823, 915 |
| MmeI | TCCRAC | 1 cut(s) | 793 |
| MroI | TCCGGA | 1 cut(s) | 275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 665 |
| MseI | TTAA | 2 cut(s) | 251, 480 |
| MspR9I | CCNGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| MunI | CAATTG | 2 cut(s) | 22, 432 |
| MvnI | CGCG | 9 cut(s) | 56, 245, 247, 609, 641, 655, 697, 732, 819 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 253, 421, 548, 652, 694 |
| NciI | CCSGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| NdeII | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| NheI | GCTAGC | 1 cut(s) | 170 |
| NlaIII | CATG | 1 cut(s) | 515 |
| NlaIV | GGNNCC | 7 cut(s) | 72, 186, 301, 390, 439, 519, 676 |
| NmeAIII | GCCGAG | 1 cut(s) | 546 |
| NruI | TCGCGA | 2 cut(s) | 56, 609 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PagI | TCATGA | 1 cut(s) | 511 |
| PciSI | GCTCTTC | 1 cut(s) | 949 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 174 |
| PdmI | GAANNNNTTC | 1 cut(s) | 665 |
| PfeI | GAWTC | 4 cut(s) | 316, 443, 584, 666 |
| Pfl23II | CGTACG | 1 cut(s) | 326 |
| PfoI | TCCNGGA | 1 cut(s) | 843 |
| PinAI | ACCGGT | 1 cut(s) | 385 |
| PkrI | GCNGC | 7 cut(s) | 129, 155, 414, 643, 657, 727, 734 |
| Ple19I | CGATCG | 2 cut(s) | 243, 928 |
| PleI | GAGTC | 3 cut(s) | 551, 822, 915 |
| PpsI | GAGTC | 3 cut(s) | 551, 822, 915 |
| PshBI | ATTAAT | 1 cut(s) | 251 |
| PspLI | CGTACG | 1 cut(s) | 326 |
| PspN4I | GGNNCC | 7 cut(s) | 72, 186, 301, 390, 439, 519, 676 |
| PspOMI | GGGCCC | 1 cut(s) | 184 |
| PspPI | GGNCC | 5 cut(s) | 184, 185, 334, 437, 766 |
| PsuI | RGATCY | 2 cut(s) | 674, 995 |
| PvuI | CGATCG | 2 cut(s) | 243, 928 |
| RgaI | GCGATCGC | 1 cut(s) | 243 |
| RruI | TCGCGA | 2 cut(s) | 56, 609 |
| RsaI | GTAC | 1 cut(s) | 328 |
| RsaNI | GTAC | 1 cut(s) | 327 |
| Rsr2I | CGGWCCG | 1 cut(s) | 766 |
| RsrII | CGGWCCG | 1 cut(s) | 766 |
| SapI | GCTCTTC | 1 cut(s) | 949 |
| SaqAI | TTAA | 2 cut(s) | 251, 480 |
| SatI | GCNGC | 7 cut(s) | 128, 154, 413, 642, 656, 726, 733 |
| Sau3AI | GATC | 6 cut(s) | 240, 453, 610, 674, 925, 995 |
| Sau96I | GGNCC | 5 cut(s) | 184, 185, 334, 437, 766 |
| SchI | GAGTC | 3 cut(s) | 551, 823, 915 |
| ScrFI | CCNGG | 7 cut(s) | 183, 188, 350, 539, 764, 794, 845 |
| SduI | GDGCHC | 2 cut(s) | 188, 961 |
| SetI | ASST | 6 cut(s) | 408, 470, 496, 511, 762, 801 |
| SfaAI | GCGATCGC | 1 cut(s) | 243 |
| SfaNI | GCATC | 3 cut(s) | 69, 493, 562 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SgfI | GCGATCGC | 1 cut(s) | 243 |
| SinI | GGWCC | 2 cut(s) | 334, 766 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 2 cut(s) | 215, 338 |
| SmoI | CTYRAG | 2 cut(s) | 215, 338 |
| Sse9I | AATT | 4 cut(s) | 22, 201, 432, 561 |
| SspMI | CTAG | 1 cut(s) | 171 |
| StyD4I | CCNGG | 7 cut(s) | 181, 186, 348, 537, 762, 792, 843 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaqI | TCGA | 6 cut(s) | 216, 305, 311, 669, 827, 924 |
| TasI | AATT | 4 cut(s) | 22, 201, 432, 561 |
| TauI | GCSGC | 6 cut(s) | 156, 415, 644, 658, 728, 735 |
| TfiI | GAWTC | 4 cut(s) | 316, 443, 584, 666 |
| Tru1I | TTAA | 2 cut(s) | 251, 480 |
| Tru9I | TTAA | 2 cut(s) | 251, 480 |
| TscAI | CASTG | 1 cut(s) | 921 |
| TseI | GCWGC | 1 cut(s) | 127 |
| TspGWI | ACGGA | 4 cut(s) | 312, 559, 577, 988 |
| TspRI | CASTG | 1 cut(s) | 921 |
| VpaK11BI | GGWCC | 2 cut(s) | 334, 766 |
| VspI | ATTAAT | 1 cut(s) | 251 |
| XhoI | CTCGAG | 1 cut(s) | 215 |
| XmnI | GAANNNNTTC | 1 cut(s) | 665 |
| XspI | CTAG | 1 cut(s) | 171 |