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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 348 |
| Acc36I | ACCTGC | 1 cut(s) | 348 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 457 |
| AccII | CGCG | 3 cut(s) | 95, 215, 221 |
| AciI | CCGC | 7 cut(s) | 93, 209, 219, 404, 432, 489, 501 |
| AclWI | GGATC | 3 cut(s) | 189, 324, 366 |
| AcuI | CTGAAG | 1 cut(s) | 347 |
| AfaI | GTAC | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 21, 22, 355, 457 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AjnI | CCWGG | 3 cut(s) | 227, 354, 456 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 2 cut(s) | 497, 513 |
| AluI | AGCT | 2 cut(s) | 497, 513 |
| Alw26I | GTCTC | 2 cut(s) | 59, 434 |
| AlwI | GGATC | 3 cut(s) | 189, 324, 366 |
| Ama87I | CYCGRG | 1 cut(s) | 326 |
| AoxI | GGCC | 7 cut(s) | 46, 64, 366, 459, 486, 553, 568 |
| ApeKI | GCWGC | 4 cut(s) | 175, 421, 476, 497 |
| AspLEI | GCGC | 2 cut(s) | 89, 223 |
| AspS9I | GGNCC | 3 cut(s) | 65, 367, 460 |
| AsuC2I | CCSGG | 1 cut(s) | 557 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| AsuNHI | GCTAGC | 1 cut(s) | 509 |
| AvaI | CYCGRG | 1 cut(s) | 326 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BbvI | GCAGC | 4 cut(s) | 162, 433, 484, 488 |
| BceAI | ACGGC | 1 cut(s) | 402 |
| BciT130I | CCWGG | 3 cut(s) | 229, 356, 458 |
| BcnI | CCSGG | 1 cut(s) | 557 |
| BcoDI | GTCTC | 2 cut(s) | 59, 434 |
| BfaI | CTAG | 4 cut(s) | 62, 390, 510, 521 |
| BfmI | CTRYAG | 2 cut(s) | 176, 341 |
| BfuAI | ACCTGC | 1 cut(s) | 348 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 485 |
| BisI | GCNGC | 7 cut(s) | 176, 422, 432, 477, 489, 498, 501 |
| BlsI | GCNGC | 7 cut(s) | 177, 423, 433, 478, 490, 499, 502 |
| Bme1390I | CCNGG | 4 cut(s) | 229, 356, 458, 557 |
| BmeT110I | CYCGRG | 1 cut(s) | 326 |
| BmgT120I | GGNCC | 3 cut(s) | 65, 367, 460 |
| BmiI | GGNNCC | 1 cut(s) | 408 |
| BmrFI | CCNGG | 4 cut(s) | 229, 356, 458, 557 |
| BmsI | GCATC | 2 cut(s) | 25, 496 |
| BmtI | GCTAGC | 1 cut(s) | 513 |
| BpuMI | CCSGG | 1 cut(s) | 557 |
| BsaJI | CCNNGG | 2 cut(s) | 190, 556 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 519, 549 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 21, 22, 355, 457 |
| BseBI | CCWGG | 3 cut(s) | 229, 356, 458 |
| BseDI | CCNNGG | 2 cut(s) | 190, 556 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 21, 22, 355, 457 |
| BseMII | CTCAG | 1 cut(s) | 104 |
| BseXI | GCAGC | 4 cut(s) | 162, 433, 484, 488 |
| Bsh1236I | CGCG | 3 cut(s) | 95, 215, 221 |
| Bsh1285I | CGRYCG | 2 cut(s) | 213, 219 |
| BshFI | GGCC | 7 cut(s) | 48, 66, 368, 461, 488, 555, 570 |
| BsiEI | CGRYCG | 2 cut(s) | 213, 219 |
| BsiHKCI | CYCGRG | 1 cut(s) | 326 |
| BsiSI | CCGG | 1 cut(s) | 556 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 21, 22, 355, 457 |
| BsmAI | GTCTC | 2 cut(s) | 59, 434 |
| BsmBI | CGTCTC | 1 cut(s) | 434 |
| BsnI | GGCC | 7 cut(s) | 48, 66, 368, 461, 488, 555, 570 |
| BsoBI | CYCGRG | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp143I | GATC | 4 cut(s) | 181, 295, 316, 358 |
| Bsp68I | TCGCGA | 1 cut(s) | 215 |
| BspACI | CCGC | 7 cut(s) | 93, 209, 219, 404, 432, 489, 501 |
| BspANI | GGCC | 7 cut(s) | 48, 66, 368, 461, 488, 555, 570 |
| BspCNI | CTCAG | 1 cut(s) | 105 |
| BspFNI | CGCG | 3 cut(s) | 95, 215, 221 |
| BspLI | GGNNCC | 1 cut(s) | 408 |
| BspMAI | CTGCAG | 2 cut(s) | 180, 345 |
| BspMI | ACCTGC | 1 cut(s) | 348 |
| BspOI | GCTAGC | 1 cut(s) | 513 |
| BspPI | GGATC | 3 cut(s) | 189, 324, 366 |
| BssECI | CCNNGG | 2 cut(s) | 190, 556 |
| BssMI | GATC | 4 cut(s) | 181, 295, 316, 358 |
| BssT1I | CCWWGG | 1 cut(s) | 190 |
| Bst2UI | CCWGG | 3 cut(s) | 229, 356, 458 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 3 cut(s) | 225, 396, 511 |
| BstDEI | CTNAG | 1 cut(s) | 113 |
| BstFNI | CGCG | 3 cut(s) | 95, 215, 221 |
| BstHHI | GCGC | 2 cut(s) | 89, 223 |
| BstKTI | GATC | 4 cut(s) | 184, 298, 319, 361 |
| BstMAI | GTCTC | 2 cut(s) | 59, 434 |
| BstMBI | GATC | 4 cut(s) | 181, 295, 316, 358 |
| BstMCI | CGRYCG | 2 cut(s) | 213, 219 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 229, 395, 485, 494, 497, 506 |
| BstNI | CCWGG | 3 cut(s) | 229, 356, 458 |
| BstSCI | CCNGG | 4 cut(s) | 227, 354, 456, 555 |
| BstSFI | CTRYAG | 2 cut(s) | 176, 341 |
| BstUI | CGCG | 3 cut(s) | 95, 215, 221 |
| BstV1I | GCAGC | 4 cut(s) | 162, 433, 484, 488 |
| BstX2I | RGATCY | 3 cut(s) | 181, 316, 358 |
| BstYI | RGATCY | 3 cut(s) | 181, 316, 358 |
| BsuRI | GGCC | 7 cut(s) | 48, 66, 368, 461, 488, 555, 570 |
| BtuMI | TCGCGA | 1 cut(s) | 215 |
| BveI | ACCTGC | 1 cut(s) | 348 |
| Cac8I | GCNNGC | 3 cut(s) | 225, 396, 511 |
| CfoI | GCGC | 2 cut(s) | 89, 223 |
| Cfr13I | GGNCC | 3 cut(s) | 65, 367, 460 |
| CseI | GACGC | 1 cut(s) | 451 |
| Csp6I | GTAC | 1 cut(s) | 119 |
| CviAII | CATG | 3 cut(s) | 401, 452, 548 |
| CviQI | GTAC | 1 cut(s) | 119 |
| DdeI | CTNAG | 1 cut(s) | 113 |
| DpnI | GATC | 4 cut(s) | 183, 297, 318, 360 |
| DpnII | GATC | 4 cut(s) | 181, 295, 316, 358 |
| Eco130I | CCWWGG | 1 cut(s) | 190 |
| Eco147I | AGGCCT | 2 cut(s) | 48, 570 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 1 cut(s) | 326 |
| EcoO109I | RGGNCCY | 1 cut(s) | 65 |
| EcoRII | CCWGG | 3 cut(s) | 227, 354, 456 |
| EcoT14I | CCWWGG | 1 cut(s) | 190 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 190 |
| Esp3I | CGTCTC | 1 cut(s) | 434 |
| FaeI | CATG | 3 cut(s) | 404, 455, 551 |
| FaiI | YATR | 4 cut(s) | 146, 402, 453, 549 |
| FatI | CATG | 3 cut(s) | 400, 451, 547 |
| FauI | CCCGC | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 7 cut(s) | 176, 422, 432, 477, 489, 498, 501 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 7 cut(s) | 176, 422, 432, 477, 489, 498, 501 |
| FspBI | CTAG | 4 cut(s) | 62, 390, 510, 521 |
| GlaI | GCGC | 2 cut(s) | 88, 222 |
| GluI | GCNGC | 7 cut(s) | 176, 422, 432, 477, 489, 498, 501 |
| HaeIII | GGCC | 7 cut(s) | 48, 66, 368, 461, 488, 555, 570 |
| HapII | CCGG | 1 cut(s) | 556 |
| HgaI | GACGC | 1 cut(s) | 451 |
| HhaI | GCGC | 2 cut(s) | 89, 223 |
| Hin1II | CATG | 3 cut(s) | 404, 455, 551 |
| Hin6I | GCGC | 2 cut(s) | 87, 221 |
| HinP1I | GCGC | 2 cut(s) | 87, 221 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HinfI | GANTC | 2 cut(s) | 253, 322 |
| HpaII | CCGG | 1 cut(s) | 556 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 321 |
| Hpy188III | TCNNGA | 5 cut(s) | 158, 214, 326, 328, 439 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyAV | CCTTC | 2 cut(s) | 38, 68 |
| HpyCH4V | TGCA | 2 cut(s) | 178, 343 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 229, 395, 485, 494, 497, 506 |
| HpyF3I | CTNAG | 1 cut(s) | 113 |
| Hsp92II | CATG | 3 cut(s) | 404, 455, 551 |
| HspAI | GCGC | 2 cut(s) | 87, 221 |
| Kzo9I | GATC | 4 cut(s) | 181, 295, 316, 358 |
| LmnI | GCTCC | 1 cut(s) | 418 |
| Lsp1109I | GCAGC | 4 cut(s) | 162, 433, 484, 488 |
| LweI | GCATC | 2 cut(s) | 25, 496 |
| MaeI | CTAG | 4 cut(s) | 62, 390, 510, 521 |
| MaeIII | GTNAC | 2 cut(s) | 10, 382 |
| MalI | GATC | 4 cut(s) | 183, 297, 318, 360 |
| MboI | GATC | 4 cut(s) | 181, 295, 316, 358 |
| MboII | GAAGA | 2 cut(s) | 176, 353 |
| MfeI | CAATTG | 1 cut(s) | 413 |
| MflI | RGATCY | 3 cut(s) | 181, 316, 358 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MluCI | AATT | 4 cut(s) | 78, 152, 371, 413 |
| MlyI | GAGTC | 2 cut(s) | 247, 316 |
| MnlI | CCTC | 7 cut(s) | 27, 108, 124, 154, 420, 435, 545 |
| MseI | TTAA | 2 cut(s) | 374, 542 |
| MspA1I | CMGCKG | 1 cut(s) | 503 |
| MspI | CCGG | 1 cut(s) | 556 |
| MspR9I | CCNGG | 4 cut(s) | 229, 356, 458, 557 |
| MunI | CAATTG | 1 cut(s) | 413 |
| MvaI | CCWGG | 3 cut(s) | 229, 356, 458 |
| MvnI | CGCG | 3 cut(s) | 95, 215, 221 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 229, 395, 485, 494, 497, 506 |
| NciI | CCSGG | 1 cut(s) | 557 |
| NdeII | GATC | 4 cut(s) | 181, 295, 316, 358 |
| NheI | GCTAGC | 1 cut(s) | 509 |
| NlaIII | CATG | 3 cut(s) | 404, 455, 551 |
| NlaIV | GGNNCC | 1 cut(s) | 408 |
| NmuCI | GTSAC | 2 cut(s) | 10, 382 |
| NruI | TCGCGA | 1 cut(s) | 215 |
| PaeR7I | CTCGAG | 1 cut(s) | 326 |
| PaqCI | CACCTGC | 1 cut(s) | 348 |
| PceI | AGGCCT | 2 cut(s) | 48, 570 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 457 |
| PfoI | TCCNGGA | 1 cut(s) | 354 |
| PkrI | GCNGC | 7 cut(s) | 177, 423, 433, 478, 490, 499, 502 |
| PleI | GAGTC | 2 cut(s) | 247, 316 |
| PpsI | GAGTC | 2 cut(s) | 247, 316 |
| Psp6I | CCWGG | 3 cut(s) | 227, 354, 456 |
| PspGI | CCWGG | 3 cut(s) | 227, 354, 456 |
| PspN4I | GGNNCC | 1 cut(s) | 408 |
| PspPI | GGNCC | 3 cut(s) | 65, 367, 460 |
| PstI | CTGCAG | 2 cut(s) | 180, 345 |
| PsuI | RGATCY | 3 cut(s) | 181, 316, 358 |
| RruI | TCGCGA | 1 cut(s) | 215 |
| RsaI | GTAC | 1 cut(s) | 120 |
| RsaNI | GTAC | 1 cut(s) | 119 |
| SaqAI | TTAA | 2 cut(s) | 374, 542 |
| SatI | GCNGC | 7 cut(s) | 176, 422, 432, 477, 489, 498, 501 |
| Sau3AI | GATC | 4 cut(s) | 181, 295, 316, 358 |
| Sau96I | GGNCC | 3 cut(s) | 65, 367, 460 |
| SchI | GAGTC | 2 cut(s) | 247, 316 |
| ScrFI | CCNGG | 4 cut(s) | 229, 356, 458, 557 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 6 cut(s) | 165, 342, 412, 459, 499, 515 |
| SfaNI | GCATC | 2 cut(s) | 25, 496 |
| SfcI | CTRYAG | 2 cut(s) | 176, 341 |
| Sfr274I | CTCGAG | 1 cut(s) | 326 |
| SlaI | CTCGAG | 1 cut(s) | 326 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 4 cut(s) | 78, 152, 371, 413 |
| SseBI | AGGCCT | 2 cut(s) | 48, 570 |
| SsiI | CCGC | 7 cut(s) | 93, 209, 219, 404, 432, 489, 501 |
| SspMI | CTAG | 4 cut(s) | 62, 390, 510, 521 |
| StuI | AGGCCT | 2 cut(s) | 48, 570 |
| StyD4I | CCNGG | 4 cut(s) | 227, 354, 456, 555 |
| StyI | CCWWGG | 1 cut(s) | 190 |
| TaqI | TCGA | 3 cut(s) | 6, 327, 438 |
| TasI | AATT | 4 cut(s) | 78, 152, 371, 413 |
| TauI | GCSGC | 3 cut(s) | 434, 491, 503 |
| Tru1I | TTAA | 2 cut(s) | 374, 542 |
| Tru9I | TTAA | 2 cut(s) | 374, 542 |
| TseFI | GTSAC | 2 cut(s) | 10, 382 |
| TseI | GCWGC | 4 cut(s) | 175, 421, 476, 497 |
| Tsp45I | GTSAC | 2 cut(s) | 10, 382 |
| TspDTI | ATGAA | 2 cut(s) | 216, 540 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 457 |
| XhoI | CTCGAG | 1 cut(s) | 326 |
| XspI | CTAG | 4 cut(s) | 62, 390, 510, 521 |