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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 785 |
| AatII | GACGTC | 1 cut(s) | 512 |
| AccI | GTMKAC | 2 cut(s) | 164, 535 |
| AccII | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| AccIII | TCCGGA | 1 cut(s) | 378 |
| AclWI | GGATC | 4 cut(s) | 392, 405, 609, 622 |
| AcoI | YGGCCR | 1 cut(s) | 218 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 2 cut(s) | 134, 509 |
| AfaI | GTAC | 3 cut(s) | 274, 488, 841 |
| AfeI | AGCGCT | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 159, 200, 249, 394, 519, 823 |
| AgsI | TTSAA | 2 cut(s) | 110, 157 |
| AluBI | AGCT | 4 cut(s) | 82, 177, 285, 822 |
| AluI | AGCT | 4 cut(s) | 82, 177, 285, 822 |
| Alw21I | GWGCWC | 3 cut(s) | 84, 117, 179 |
| Alw26I | GTCTC | 1 cut(s) | 27 |
| AlwI | GGATC | 4 cut(s) | 392, 405, 609, 622 |
| Ama87I | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| Aor13HI | TCCGGA | 1 cut(s) | 378 |
| Aor51HI | AGCGCT | 1 cut(s) | 481 |
| AoxI | GGCC | 3 cut(s) | 142, 218, 637 |
| ApeKI | GCWGC | 2 cut(s) | 503, 819 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 44, 76 |
| AspLEI | GCGC | 7 cut(s) | 210, 215, 412, 424, 473, 482, 811 |
| AspS9I | GGNCC | 3 cut(s) | 494, 638, 787 |
| AsuC2I | CCSGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 269, 423 |
| AsuII | TTCGAA | 1 cut(s) | 128 |
| AvaI | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| AvaII | GGWCC | 2 cut(s) | 494, 787 |
| BamHI | GGATCC | 2 cut(s) | 397, 614 |
| BanII | GRGCYC | 3 cut(s) | 84, 179, 551 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 3 cut(s) | 84, 117, 179 |
| BbvI | GCAGC | 2 cut(s) | 515, 831 |
| BccI | CCATC | 2 cut(s) | 341, 830 |
| BceAI | ACGGC | 1 cut(s) | 629 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 465, 499 |
| BcnI | CCSGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| BcoDI | GTCTC | 1 cut(s) | 27 |
| BfaI | CTAG | 2 cut(s) | 554, 707 |
| BfmI | CTRYAG | 1 cut(s) | 772 |
| BfoI | RGCGCY | 2 cut(s) | 425, 483 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| Bme1390I | CCNGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| Bme18I | GGWCC | 2 cut(s) | 494, 787 |
| BmeT110I | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| BmgT120I | GGNCC | 3 cut(s) | 494, 638, 787 |
| BmiI | GGNNCC | 8 cut(s) | 399, 495, 496, 616, 640, 738, 788, 789 |
| BmrFI | CCNGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| BmsI | GCATC | 3 cut(s) | 206, 379, 649 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| Bpu14I | TTCGAA | 1 cut(s) | 128 |
| BpuEI | CTTGAG | 1 cut(s) | 445 |
| BpuMI | CCSGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| BsaBI | GATNNNNATC | 1 cut(s) | 442 |
| BsaHI | GRCGYC | 2 cut(s) | 134, 509 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 5 cut(s) | 291, 518, 630, 743, 783 |
| BsaWI | WCCGGW | 2 cut(s) | 257, 378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 161, 191 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 159, 200, 249, 394, 519, 823 |
| Bse118I | RCCGGY | 2 cut(s) | 193, 418 |
| Bse8I | GATNNNNATC | 1 cut(s) | 442 |
| BseAI | TCCGGA | 1 cut(s) | 378 |
| BseDI | CCNNGG | 5 cut(s) | 291, 518, 630, 743, 783 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseJI | GATNNNNATC | 1 cut(s) | 442 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 159, 200, 249, 394, 519, 823 |
| BseRI | GAGGAG | 4 cut(s) | 169, 535, 675, 729 |
| BseX3I | CGGCCG | 1 cut(s) | 218 |
| BseXI | GCAGC | 2 cut(s) | 515, 831 |
| BseYI | CCCAGC | 1 cut(s) | 189 |
| Bsh1236I | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| Bsh1285I | CGRYCG | 2 cut(s) | 221, 405 |
| BshFI | GGCC | 3 cut(s) | 144, 220, 639 |
| BsiEI | CGRYCG | 2 cut(s) | 221, 405 |
| BsiHKAI | GWGCWC | 3 cut(s) | 84, 117, 179 |
| BsiHKCI | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| BsiWI | CGTACG | 1 cut(s) | 486 |
| BslFI | GGGAC | 4 cut(s) | 480, 496, 773, 778 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 159, 200, 249, 394, 519, 823 |
| BsmAI | GTCTC | 1 cut(s) | 27 |
| BsmFI | GGGAC | 4 cut(s) | 480, 496, 773, 778 |
| BsmI | GAATGC | 2 cut(s) | 372, 854 |
| BsnI | GGCC | 3 cut(s) | 144, 220, 639 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| Bsp119I | TTCGAA | 1 cut(s) | 128 |
| Bsp1286I | GDGCHC | 4 cut(s) | 84, 117, 179, 551 |
| Bsp13I | TCCGGA | 1 cut(s) | 378 |
| Bsp143I | GATC | 4 cut(s) | 397, 402, 437, 614 |
| BspANI | GGCC | 3 cut(s) | 144, 220, 639 |
| BspEI | TCCGGA | 1 cut(s) | 378 |
| BspFNI | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| BspLI | GGNNCC | 8 cut(s) | 399, 495, 496, 616, 640, 738, 788, 789 |
| BspPI | GGATC | 4 cut(s) | 392, 405, 609, 622 |
| BspT104I | TTCGAA | 1 cut(s) | 128 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrFI | RCCGGY | 2 cut(s) | 193, 418 |
| BssAI | RCCGGY | 2 cut(s) | 193, 418 |
| BssECI | CCNNGG | 5 cut(s) | 291, 518, 630, 743, 783 |
| BssMI | GATC | 4 cut(s) | 397, 402, 437, 614 |
| BssNI | GRCGYC | 2 cut(s) | 134, 509 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 356 |
| BstACI | GRCGYC | 2 cut(s) | 134, 509 |
| BstBI | TTCGAA | 1 cut(s) | 128 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstFNI | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| BstH2I | RGCGCY | 2 cut(s) | 425, 483 |
| BstHHI | GCGC | 7 cut(s) | 210, 215, 412, 424, 473, 482, 811 |
| BstKTI | GATC | 4 cut(s) | 400, 405, 440, 617 |
| BstMAI | GTCTC | 1 cut(s) | 27 |
| BstMBI | GATC | 4 cut(s) | 397, 402, 437, 614 |
| BstMCI | CGRYCG | 2 cut(s) | 221, 405 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 190, 194, 477, 479, 550, 650, 659, 668, 757 |
| BstSCI | CCNGG | 5 cut(s) | 215, 742, 782, 783, 804 |
| BstSFI | CTRYAG | 1 cut(s) | 772 |
| BstUI | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| BstV1I | GCAGC | 2 cut(s) | 515, 831 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| BstX2I | RGATCY | 2 cut(s) | 397, 614 |
| BstYI | RGATCY | 2 cut(s) | 397, 614 |
| BstZI | CGGCCG | 1 cut(s) | 218 |
| BsuRI | GGCC | 3 cut(s) | 144, 220, 639 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| CfoI | GCGC | 7 cut(s) | 210, 215, 412, 424, 473, 482, 811 |
| Cfr10I | RCCGGY | 2 cut(s) | 193, 418 |
| Cfr13I | GGNCC | 3 cut(s) | 494, 638, 787 |
| Cfr9I | CCCGGG | 1 cut(s) | 783 |
| CseI | GACGC | 4 cut(s) | 142, 391, 417, 521 |
| Csp6I | GTAC | 3 cut(s) | 273, 487, 840 |
| CviAII | CATG | 1 cut(s) | 564 |
| CviQI | GTAC | 3 cut(s) | 273, 487, 840 |
| DpnI | GATC | 4 cut(s) | 399, 404, 439, 616 |
| DpnII | GATC | 4 cut(s) | 397, 402, 437, 614 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 785 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 785 |
| EaeI | YGGCCR | 1 cut(s) | 218 |
| EagI | CGGCCG | 1 cut(s) | 218 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 356 |
| EarI | CTCTTC | 2 cut(s) | 65, 356 |
| Ecl136II | GAGCTC | 2 cut(s) | 82, 177 |
| EclXI | CGGCCG | 1 cut(s) | 218 |
| Eco147I | AGGCCT | 1 cut(s) | 144 |
| Eco24I | GRGCYC | 3 cut(s) | 84, 179, 551 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco47I | GGWCC | 2 cut(s) | 494, 787 |
| Eco47III | AGCGCT | 1 cut(s) | 481 |
| Eco52I | CGGCCG | 1 cut(s) | 218 |
| Eco53kI | GAGCTC | 2 cut(s) | 82, 177 |
| Eco88I | CYCGRG | 4 cut(s) | 83, 689, 783, 823 |
| EcoICRI | GAGCTC | 2 cut(s) | 82, 177 |
| EcoO109I | RGGNCCY | 3 cut(s) | 494, 638, 787 |
| EcoT22I | ATGCAT | 1 cut(s) | 372 |
| EcoT38I | GRGCYC | 3 cut(s) | 84, 179, 551 |
| FaeI | CATG | 1 cut(s) | 567 |
| FaiI | YATR | 6 cut(s) | 94, 315, 338, 565, 725, 774 |
| FaqI | GGGAC | 4 cut(s) | 480, 496, 773, 778 |
| FatI | CATG | 1 cut(s) | 563 |
| FauI | CCCGC | 7 cut(s) | 193, 333, 476, 522, 549, 558, 649 |
| FblI | GTMKAC | 2 cut(s) | 164, 535 |
| FokI | GGATG | 1 cut(s) | 357 |
| FriOI | GRGCYC | 3 cut(s) | 84, 179, 551 |
| FspBI | CTAG | 2 cut(s) | 554, 707 |
| GlaI | GCGC | 7 cut(s) | 209, 214, 411, 423, 472, 481, 810 |
| GsaI | CCCAGC | 1 cut(s) | 193 |
| HaeII | RGCGCY | 2 cut(s) | 425, 483 |
| HaeIII | GGCC | 3 cut(s) | 144, 220, 639 |
| HgaI | GACGC | 4 cut(s) | 142, 391, 417, 521 |
| HhaI | GCGC | 7 cut(s) | 210, 215, 412, 424, 473, 482, 811 |
| Hin1I | GRCGYC | 2 cut(s) | 134, 509 |
| Hin1II | CATG | 1 cut(s) | 567 |
| Hin6I | GCGC | 7 cut(s) | 208, 213, 410, 422, 471, 480, 809 |
| HinP1I | GCGC | 7 cut(s) | 208, 213, 410, 422, 471, 480, 809 |
| HincII | GTYRAC | 3 cut(s) | 31, 165, 536 |
| HindII | GTYRAC | 3 cut(s) | 31, 165, 536 |
| HinfI | GANTC | 4 cut(s) | 40, 296, 570, 779 |
| HphI | GGTGA | 3 cut(s) | 232, 269, 423 |
| Hpy166II | GTNNAC | 4 cut(s) | 31, 165, 536, 721 |
| Hpy188I | TCNGA | 3 cut(s) | 402, 596, 619 |
| Hpy188III | TCNNGA | 9 cut(s) | 85, 201, 379, 447, 462, 574, 689, 790, 825 |
| Hpy8I | GTNNAC | 4 cut(s) | 31, 165, 536, 721 |
| Hpy99I | CGWCG | 7 cut(s) | 323, 453, 503, 511, 537, 650, 671 |
| HpyAV | CCTTC | 3 cut(s) | 163, 261, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 509, 666 |
| HpyCH4V | TGCA | 1 cut(s) | 370 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 190, 194, 477, 479, 550, 650, 659, 668, 757 |
| HpySE526I | ACGT | 2 cut(s) | 509, 666 |
| Hsp92I | GRCGYC | 2 cut(s) | 134, 509 |
| Hsp92II | CATG | 1 cut(s) | 567 |
| HspAI | GCGC | 7 cut(s) | 208, 213, 410, 422, 471, 480, 809 |
| KflI | GGGWCCC | 2 cut(s) | 494, 787 |
| Kpn2I | TCCGGA | 1 cut(s) | 378 |
| KroI | GCCGGC | 1 cut(s) | 193 |
| KroNI | GCCGGC | 1 cut(s) | 195 |
| Kzo9I | GATC | 4 cut(s) | 397, 402, 437, 614 |
| LmnI | GCTCC | 2 cut(s) | 182, 742 |
| Lsp1109I | GCAGC | 2 cut(s) | 515, 831 |
| LweI | GCATC | 3 cut(s) | 206, 379, 649 |
| MaeI | CTAG | 2 cut(s) | 554, 707 |
| MaeII | ACGT | 2 cut(s) | 509, 666 |
| MaeIII | GTNAC | 1 cut(s) | 429 |
| MalI | GATC | 4 cut(s) | 399, 404, 439, 616 |
| MboI | GATC | 4 cut(s) | 397, 402, 437, 614 |
| MboII | GAAGA | 7 cut(s) | 52, 142, 291, 294, 297, 300, 373 |
| MflI | RGATCY | 2 cut(s) | 397, 614 |
| MhlI | GDGCHC | 4 cut(s) | 84, 117, 179, 551 |
| MluCI | AATT | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 34, 773 |
| Mph1103I | ATGCAT | 1 cut(s) | 372 |
| MroI | TCCGGA | 1 cut(s) | 378 |
| MroNI | GCCGGC | 1 cut(s) | 193 |
| MspR9I | CCNGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| MteI | GCGCNGCGC | 1 cut(s) | 211 |
| Mva1269I | GAATGC | 2 cut(s) | 372, 854 |
| MvnI | CGCG | 7 cut(s) | 173, 213, 410, 428, 471, 532, 850 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 190, 194, 477, 479, 550, 650, 659, 668, 757 |
| NaeI | GCCGGC | 1 cut(s) | 195 |
| NciI | CCSGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| NdeII | GATC | 4 cut(s) | 397, 402, 437, 614 |
| NgoMIV | GCCGGC | 1 cut(s) | 193 |
| NlaIII | CATG | 1 cut(s) | 567 |
| NlaIV | GGNNCC | 8 cut(s) | 399, 495, 496, 616, 640, 738, 788, 789 |
| NmeAIII | GCCGAG | 2 cut(s) | 543, 570 |
| NmuCI | GTSAC | 1 cut(s) | 429 |
| NsiI | ATGCAT | 1 cut(s) | 372 |
| NspV | TTCGAA | 1 cut(s) | 128 |
| PaeR7I | CTCGAG | 1 cut(s) | 83 |
| PceI | AGGCCT | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 170, 495, 515, 654, 672 |
| PctI | GAATGC | 2 cut(s) | 372, 854 |
| PdiI | GCCGGC | 1 cut(s) | 195 |
| PfeI | GAWTC | 2 cut(s) | 296, 570 |
| Pfl23II | CGTACG | 1 cut(s) | 486 |
| Ple19I | CGATCG | 1 cut(s) | 405 |
| PleI | GAGTC | 2 cut(s) | 34, 773 |
| PpsI | GAGTC | 2 cut(s) | 34, 773 |
| PpuMI | RGGWCCY | 2 cut(s) | 494, 787 |
| Psp124BI | GAGCTC | 2 cut(s) | 84, 179 |
| Psp5II | RGGWCCY | 2 cut(s) | 494, 787 |
| PspFI | CCCAGC | 1 cut(s) | 189 |
| PspLI | CGTACG | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 8 cut(s) | 399, 495, 496, 616, 640, 738, 788, 789 |
| PspPI | GGNCC | 3 cut(s) | 494, 638, 787 |
| PspPPI | RGGWCCY | 2 cut(s) | 494, 787 |
| PsuI | RGATCY | 2 cut(s) | 397, 614 |
| PvuI | CGATCG | 1 cut(s) | 405 |
| RsaI | GTAC | 3 cut(s) | 274, 488, 841 |
| RsaNI | GTAC | 3 cut(s) | 273, 487, 840 |
| SacI | GAGCTC | 2 cut(s) | 84, 179 |
| SalI | GTCGAC | 2 cut(s) | 163, 534 |
| Sau3AI | GATC | 4 cut(s) | 397, 402, 437, 614 |
| Sau96I | GGNCC | 3 cut(s) | 494, 638, 787 |
| SchI | GAGTC | 2 cut(s) | 34, 773 |
| ScrFI | CCNGG | 5 cut(s) | 217, 744, 784, 785, 806 |
| SduI | GDGCHC | 4 cut(s) | 84, 117, 179, 551 |
| SfaNI | GCATC | 3 cut(s) | 206, 379, 649 |
| SfcI | CTRYAG | 1 cut(s) | 772 |
| Sfr274I | CTCGAG | 1 cut(s) | 83 |
| SfuI | TTCGAA | 1 cut(s) | 128 |
| SgrAI | CRCCGGYG | 1 cut(s) | 418 |
| SinI | GGWCC | 2 cut(s) | 494, 787 |
| SlaI | CTCGAG | 1 cut(s) | 83 |
| SmaI | CCCGGG | 1 cut(s) | 785 |
| SmlI | CTYRAG | 2 cut(s) | 83, 460 |
| SmoI | CTYRAG | 2 cut(s) | 83, 460 |
| Sse9I | AATT | 1 cut(s) | 5 |
| SseBI | AGGCCT | 1 cut(s) | 144 |
| SspI | AATATT | 1 cut(s) | 831 |
| SspMI | CTAG | 2 cut(s) | 554, 707 |
| SstI | GAGCTC | 2 cut(s) | 84, 179 |
| StuI | AGGCCT | 1 cut(s) | 144 |
| StyD4I | CCNGG | 5 cut(s) | 215, 742, 782, 783, 804 |
| TaiI | ACGT | 2 cut(s) | 512, 669 |
| TaqI | TCGA | 9 cut(s) | 84, 128, 164, 350, 393, 436, 535, 625, 729 |
| TasI | AATT | 1 cut(s) | 5 |
| TfiI | GAWTC | 2 cut(s) | 296, 570 |
| TseFI | GTSAC | 1 cut(s) | 429 |
| TseI | GCWGC | 2 cut(s) | 503, 819 |
| Tsp45I | GTSAC | 1 cut(s) | 429 |
| TspDTI | ATGAA | 3 cut(s) | 17, 368, 770 |
| TspGWI | ACGGA | 2 cut(s) | 373, 615 |
| TspMI | CCCGGG | 1 cut(s) | 783 |
| VpaK11BI | GGWCC | 2 cut(s) | 494, 787 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XhoI | CTCGAG | 1 cut(s) | 83 |
| XmaI | CCCGGG | 1 cut(s) | 783 |
| XmiI | GTMKAC | 2 cut(s) | 164, 535 |
| XspI | CTAG | 2 cut(s) | 554, 707 |
| ZraI | GACGTC | 1 cut(s) | 510 |
| Zsp2I | ATGCAT | 1 cut(s) | 372 |