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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 249 |
| Acc36I | ACCTGC | 3 cut(s) | 25, 409, 555 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 583 |
| AccII | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| AciI | CCGC | 8 cut(s) | 114, 313, 379, 401, 405, 438, 695, 758 |
| AclWI | GGATC | 1 cut(s) | 518 |
| AcoI | YGGCCR | 1 cut(s) | 402 |
| AcsI | RAATTY | 1 cut(s) | 338 |
| AcuI | CTGAAG | 1 cut(s) | 512 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 109, 541, 583, 694 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AluBI | AGCT | 7 cut(s) | 44, 287, 335, 358, 488, 704, 720 |
| AluI | AGCT | 7 cut(s) | 44, 287, 335, 358, 488, 704, 720 |
| Alw21I | GWGCWC | 3 cut(s) | 192, 289, 360 |
| AlwI | GGATC | 1 cut(s) | 518 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 74, 547 |
| AoxI | GGCC | 4 cut(s) | 111, 402, 573, 594 |
| ApeKI | GCWGC | 5 cut(s) | 74, 238, 638, 704, 707 |
| ApoI | RAATTY | 1 cut(s) | 338 |
| AseI | ATTAAT | 1 cut(s) | 384 |
| AspLEI | GCGC | 4 cut(s) | 277, 321, 379, 409 |
| AspS9I | GGNCC | 5 cut(s) | 251, 502, 544, 574, 595 |
| AsuC2I | CCSGG | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 491, 601 |
| AsuII | TTCGAA | 1 cut(s) | 645 |
| AvaII | GGWCC | 3 cut(s) | 251, 502, 544 |
| AxyI | CCTNAGG | 1 cut(s) | 475 |
| BanII | GRGCYC | 3 cut(s) | 93, 289, 360 |
| Bbv12I | GWGCWC | 3 cut(s) | 192, 289, 360 |
| BbvCI | CCTCAGC | 1 cut(s) | 108 |
| BbvI | GCAGC | 5 cut(s) | 61, 250, 650, 691, 694 |
| BccI | CCATC | 1 cut(s) | 295 |
| BceAI | ACGGC | 1 cut(s) | 609 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcnI | CCSGG | 1 cut(s) | 207 |
| BfaI | CTAG | 3 cut(s) | 32, 414, 728 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfuAI | ACCTGC | 3 cut(s) | 25, 409, 555 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 410 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 207 |
| Bme18I | GGWCC | 3 cut(s) | 251, 502, 544 |
| BmgT120I | GGNCC | 5 cut(s) | 251, 502, 544, 574, 595 |
| BmiI | GGNNCC | 5 cut(s) | 66, 201, 252, 503, 615 |
| BmrFI | CCNGG | 2 cut(s) | 26, 207 |
| BmrI | ACTGGG | 1 cut(s) | 571 |
| BmsI | GCATC | 2 cut(s) | 262, 470 |
| BmuI | ACTGGG | 1 cut(s) | 571 |
| Bpu10I | CCTNAGC | 2 cut(s) | 108, 634 |
| Bpu14I | TTCGAA | 1 cut(s) | 645 |
| BpuEI | CTTGAG | 3 cut(s) | 273, 623, 654 |
| BpuMI | CCSGG | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 1 cut(s) | 24 |
| BsaWI | WCCGGW | 2 cut(s) | 61, 268 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 354, 384 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 109, 541, 583, 694 |
| Bse1I | ACTGG | 2 cut(s) | 68, 577 |
| Bse21I | CCTNAGG | 1 cut(s) | 475 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 1 cut(s) | 24 |
| BseGI | GGATG | 2 cut(s) | 148, 277 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 109, 541, 583, 694 |
| BseMII | CTCAG | 4 cut(s) | 36, 99, 632, 671 |
| BseNI | ACTGG | 2 cut(s) | 68, 577 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseX3I | CGGCCG | 1 cut(s) | 402 |
| BseXI | GCAGC | 5 cut(s) | 61, 250, 650, 691, 694 |
| Bsh1236I | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| Bsh1285I | CGRYCG | 2 cut(s) | 399, 405 |
| BshFI | GGCC | 4 cut(s) | 113, 404, 575, 596 |
| BsiEI | CGRYCG | 2 cut(s) | 399, 405 |
| BsiHKAI | GWGCWC | 3 cut(s) | 192, 289, 360 |
| BsiSI | CCGG | 3 cut(s) | 62, 206, 269 |
| BslFI | GGGAC | 4 cut(s) | 86, 128, 242, 515 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 109, 541, 583, 694 |
| BsmFI | GGGAC | 4 cut(s) | 86, 128, 242, 515 |
| BsnI | GGCC | 4 cut(s) | 113, 404, 575, 596 |
| Bsp119I | TTCGAA | 1 cut(s) | 645 |
| Bsp1286I | GDGCHC | 4 cut(s) | 93, 192, 289, 360 |
| Bsp143I | GATC | 4 cut(s) | 396, 481, 510, 561 |
| Bsp68I | TCGCGA | 1 cut(s) | 468 |
| BspACI | CCGC | 8 cut(s) | 114, 313, 379, 401, 405, 438, 695, 758 |
| BspANI | GGCC | 4 cut(s) | 113, 404, 575, 596 |
| BspCNI | CTCAG | 4 cut(s) | 37, 100, 631, 670 |
| BspFNI | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| BspLI | GGNNCC | 5 cut(s) | 66, 201, 252, 503, 615 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspMI | ACCTGC | 3 cut(s) | 25, 409, 555 |
| BspPI | GGATC | 1 cut(s) | 518 |
| BspT104I | TTCGAA | 1 cut(s) | 645 |
| BsrI | ACTGG | 2 cut(s) | 68, 577 |
| BssECI | CCNNGG | 1 cut(s) | 24 |
| BssMI | GATC | 4 cut(s) | 396, 481, 510, 561 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 233 |
| BstBI | TTCGAA | 1 cut(s) | 645 |
| BstC8I | GCNNGC | 7 cut(s) | 188, 279, 317, 411, 552, 676, 702 |
| BstDEI | CTNAG | 6 cut(s) | 45, 108, 475, 618, 634, 657 |
| BstF5I | GGATG | 2 cut(s) | 148, 277 |
| BstFNI | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| BstHHI | GCGC | 4 cut(s) | 277, 321, 379, 409 |
| BstKTI | GATC | 4 cut(s) | 399, 484, 513, 564 |
| BstMBI | GATC | 4 cut(s) | 396, 481, 510, 561 |
| BstMCI | CGRYCG | 2 cut(s) | 399, 405 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstSCI | CCNGG | 2 cut(s) | 24, 205 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstUI | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| BstV1I | GCAGC | 5 cut(s) | 61, 250, 650, 691, 694 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BstZI | CGGCCG | 1 cut(s) | 402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 475 |
| BsuRI | GGCC | 4 cut(s) | 113, 404, 575, 596 |
| BtgZI | GCGATG | 1 cut(s) | 665 |
| BtsCI | GGATG | 2 cut(s) | 148, 277 |
| BtuMI | TCGCGA | 1 cut(s) | 468 |
| BveI | ACCTGC | 3 cut(s) | 25, 409, 555 |
| Cac8I | GCNNGC | 7 cut(s) | 188, 279, 317, 411, 552, 676, 702 |
| CaiI | CAGNNNCTG | 2 cut(s) | 74, 547 |
| CciNI | GCGGCCGC | 1 cut(s) | 402 |
| CfoI | GCGC | 4 cut(s) | 277, 321, 379, 409 |
| Cfr13I | GGNCC | 5 cut(s) | 251, 502, 544, 574, 595 |
| CseI | GACGC | 2 cut(s) | 131, 484 |
| CviAII | CATG | 1 cut(s) | 755 |
| DdeI | CTNAG | 6 cut(s) | 45, 108, 475, 618, 634, 657 |
| DpnI | GATC | 4 cut(s) | 398, 483, 512, 563 |
| DpnII | GATC | 4 cut(s) | 396, 481, 510, 561 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 249 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 249 |
| EaeI | YGGCCR | 1 cut(s) | 402 |
| EagI | CGGCCG | 1 cut(s) | 402 |
| Ecl136II | GAGCTC | 2 cut(s) | 287, 358 |
| EclXI | CGGCCG | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 3 cut(s) | 93, 289, 360 |
| Eco47I | GGWCC | 3 cut(s) | 251, 502, 544 |
| Eco52I | CGGCCG | 1 cut(s) | 402 |
| Eco53kI | GAGCTC | 2 cut(s) | 287, 358 |
| Eco57I | CTGAAG | 1 cut(s) | 512 |
| Eco81I | CCTNAGG | 1 cut(s) | 475 |
| EcoICRI | GAGCTC | 2 cut(s) | 287, 358 |
| EcoO109I | RGGNCCY | 3 cut(s) | 251, 502, 544 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 3 cut(s) | 93, 289, 360 |
| FaeI | CATG | 1 cut(s) | 758 |
| FaiI | YATR | 4 cut(s) | 215, 352, 508, 756 |
| FaqI | GGGAC | 4 cut(s) | 86, 128, 242, 515 |
| FatI | CATG | 1 cut(s) | 754 |
| FauI | CCCGC | 1 cut(s) | 751 |
| FokI | GGATG | 2 cut(s) | 135, 284 |
| FriOI | GRGCYC | 3 cut(s) | 93, 289, 360 |
| FspBI | CTAG | 3 cut(s) | 32, 414, 728 |
| GlaI | GCGC | 4 cut(s) | 276, 320, 378, 408 |
| HaeIII | GGCC | 4 cut(s) | 113, 404, 575, 596 |
| HapII | CCGG | 3 cut(s) | 62, 206, 269 |
| HgaI | GACGC | 2 cut(s) | 131, 484 |
| HhaI | GCGC | 4 cut(s) | 277, 321, 379, 409 |
| Hin1II | CATG | 1 cut(s) | 758 |
| Hin6I | GCGC | 4 cut(s) | 275, 319, 377, 407 |
| HinP1I | GCGC | 4 cut(s) | 275, 319, 377, 407 |
| HincII | GTYRAC | 1 cut(s) | 121 |
| HindII | GTYRAC | 1 cut(s) | 121 |
| HinfI | GANTC | 3 cut(s) | 210, 470, 655 |
| HpaII | CCGG | 3 cut(s) | 62, 206, 269 |
| HphI | GGTGA | 3 cut(s) | 319, 491, 601 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 767 |
| Hpy188I | TCNGA | 4 cut(s) | 531, 621, 660, 689 |
| Hpy188III | TCNNGA | 8 cut(s) | 11, 32, 152, 254, 290, 467, 542, 728 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 767 |
| Hpy99I | CGWCG | 2 cut(s) | 89, 140 |
| HpyAV | CCTTC | 2 cut(s) | 536, 652 |
| HpyCH4III | ACNGT | 1 cut(s) | 233 |
| HpyCH4V | TGCA | 3 cut(s) | 238, 446, 550 |
| HpyF3I | CTNAG | 6 cut(s) | 45, 108, 475, 618, 634, 657 |
| Hsp92II | CATG | 1 cut(s) | 758 |
| HspAI | GCGC | 4 cut(s) | 275, 319, 377, 407 |
| Kzo9I | GATC | 4 cut(s) | 396, 481, 510, 561 |
| LmnI | GCTCC | 4 cut(s) | 41, 205, 363, 697 |
| Lsp1109I | GCAGC | 5 cut(s) | 61, 250, 650, 691, 694 |
| LweI | GCATC | 2 cut(s) | 262, 470 |
| MaeI | CTAG | 3 cut(s) | 32, 414, 728 |
| MaeIII | GTNAC | 1 cut(s) | 589 |
| MalI | GATC | 4 cut(s) | 398, 483, 512, 563 |
| MboI | GATC | 4 cut(s) | 396, 481, 510, 561 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 4 cut(s) | 93, 192, 289, 360 |
| MluCI | AATT | 1 cut(s) | 338 |
| MlyI | GAGTC | 3 cut(s) | 219, 464, 649 |
| MmeI | TCCRAC | 1 cut(s) | 712 |
| MnlI | CCTC | 8 cut(s) | 103, 156, 168, 213, 219, 451, 604, 627 |
| MseI | TTAA | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 1 cut(s) | 116 |
| MspI | CCGG | 3 cut(s) | 62, 206, 269 |
| MspR9I | CCNGG | 2 cut(s) | 26, 207 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MvnI | CGCG | 8 cut(s) | 186, 379, 401, 407, 438, 468, 495, 678 |
| NciI | CCSGG | 1 cut(s) | 207 |
| NdeII | GATC | 4 cut(s) | 396, 481, 510, 561 |
| NlaIII | CATG | 1 cut(s) | 758 |
| NlaIV | GGNNCC | 5 cut(s) | 66, 201, 252, 503, 615 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| NotI | GCGGCCGC | 1 cut(s) | 402 |
| NruI | TCGCGA | 1 cut(s) | 468 |
| NspV | TTCGAA | 1 cut(s) | 645 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 583 |
| PfoI | TCCNGGA | 1 cut(s) | 205 |
| Ple19I | CGATCG | 1 cut(s) | 399 |
| PleI | GAGTC | 3 cut(s) | 218, 464, 649 |
| PpsI | GAGTC | 3 cut(s) | 218, 464, 649 |
| PpuMI | RGGWCCY | 3 cut(s) | 251, 502, 544 |
| PshBI | ATTAAT | 1 cut(s) | 384 |
| Psp124BI | GAGCTC | 2 cut(s) | 289, 360 |
| Psp5II | RGGWCCY | 3 cut(s) | 251, 502, 544 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 5 cut(s) | 66, 201, 252, 503, 615 |
| PspPI | GGNCC | 5 cut(s) | 251, 502, 544, 574, 595 |
| PspPPI | RGGWCCY | 3 cut(s) | 251, 502, 544 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PstNI | CAGNNNCTG | 2 cut(s) | 74, 547 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| PvuI | CGATCG | 1 cut(s) | 399 |
| RruI | TCGCGA | 1 cut(s) | 468 |
| SacI | GAGCTC | 2 cut(s) | 289, 360 |
| SaqAI | TTAA | 1 cut(s) | 384 |
| Sau3AI | GATC | 4 cut(s) | 396, 481, 510, 561 |
| Sau96I | GGNCC | 5 cut(s) | 251, 502, 544, 574, 595 |
| SchI | GAGTC | 3 cut(s) | 219, 464, 649 |
| ScrFI | CCNGG | 2 cut(s) | 26, 207 |
| SduI | GDGCHC | 4 cut(s) | 93, 192, 289, 360 |
| SfaNI | GCATC | 2 cut(s) | 262, 470 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SfuI | TTCGAA | 1 cut(s) | 645 |
| SinI | GGWCC | 3 cut(s) | 251, 502, 544 |
| SmlI | CTYRAG | 4 cut(s) | 9, 288, 602, 669 |
| SmoI | CTYRAG | 4 cut(s) | 9, 288, 602, 669 |
| Sse9I | AATT | 1 cut(s) | 338 |
| SsiI | CCGC | 8 cut(s) | 114, 313, 379, 401, 405, 438, 695, 758 |
| SspI | AATATT | 1 cut(s) | 296 |
| SspMI | CTAG | 3 cut(s) | 32, 414, 728 |
| SstI | GAGCTC | 2 cut(s) | 289, 360 |
| StyD4I | CCNGG | 2 cut(s) | 24, 205 |
| TaaI | ACNGT | 1 cut(s) | 233 |
| TaqI | TCGA | 6 cut(s) | 87, 138, 192, 484, 564, 645 |
| TasI | AATT | 1 cut(s) | 338 |
| TauI | GCSGC | 5 cut(s) | 116, 315, 404, 407, 441 |
| Tru1I | TTAA | 1 cut(s) | 384 |
| Tru9I | TTAA | 1 cut(s) | 384 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 5 cut(s) | 74, 238, 638, 704, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 1 cut(s) | 747 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 583 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 502, 544 |
| VspI | ATTAAT | 1 cut(s) | 384 |
| XapI | RAATTY | 1 cut(s) | 338 |
| XbaI | TCTAGA | 2 cut(s) | 31, 727 |
| XspI | CTAG | 3 cut(s) | 32, 414, 728 |