Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 727 |
| Acc36I | ACCTGC | 1 cut(s) | 218 |
| AccB1I | GGYRCC | 2 cut(s) | 116, 1120 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 272, 826 |
| AccBSI | CCGCTC | 1 cut(s) | 289 |
| AclWI | GGATC | 4 cut(s) | 754, 767, 974, 1052 |
| AcoI | YGGCCR | 2 cut(s) | 640, 813 |
| AcuI | CTGAAG | 2 cut(s) | 322, 1287 |
| AcyI | GRCGYC | 1 cut(s) | 1140 |
| AdeI | CACNNNGTG | 1 cut(s) | 272 |
| AfaI | GTAC | 5 cut(s) | 607, 669, 857, 896, 1136 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 141, 272, 401, 671, 826, 1184, 1185, 1260 |
| AgeI | ACCGGT | 2 cut(s) | 533, 664 |
| AgsI | TTSAA | 1 cut(s) | 959 |
| AjnI | CCWGG | 4 cut(s) | 516, 900, 973, 1142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 756, 788 |
| AluBI | AGCT | 4 cut(s) | 111, 677, 1065, 1072 |
| AluI | AGCT | 4 cut(s) | 111, 677, 1065, 1072 |
| Alw21I | GWGCWC | 2 cut(s) | 525, 679 |
| Alw26I | GTCTC | 2 cut(s) | 167, 713 |
| AlwI | GGATC | 4 cut(s) | 754, 767, 974, 1052 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 111 |
| AoxI | GGCC | 7 cut(s) | 68, 456, 640, 733, 813, 1175, 1187 |
| ApaI | GGGCCC | 1 cut(s) | 1179 |
| ApeKI | GCWGC | 4 cut(s) | 293, 471, 802, 1049 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 326, 358 |
| AseI | ATTAAT | 1 cut(s) | 11 |
| AsiGI | ACCGGT | 2 cut(s) | 533, 664 |
| AspLEI | GCGC | 4 cut(s) | 202, 1001, 1003, 1005 |
| AspS9I | GGNCC | 6 cut(s) | 69, 457, 734, 1175, 1176, 1187 |
| AsuHPI | GGTGA | 3 cut(s) | 376, 436, 1007 |
| BaeGI | GKGCMC | 2 cut(s) | 121, 1179 |
| BalI | TGGCCA | 1 cut(s) | 642 |
| BamHI | GGATCC | 1 cut(s) | 759 |
| BanI | GGYRCC | 2 cut(s) | 116, 1120 |
| BanII | GRGCYC | 3 cut(s) | 679, 1179, 1240 |
| Bbv12I | GWGCWC | 2 cut(s) | 525, 679 |
| BbvI | GCAGC | 4 cut(s) | 280, 483, 789, 1036 |
| BccI | CCATC | 6 cut(s) | 135, 167, 267, 389, 395, 492 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 23, 57 |
| BciT130I | CCWGG | 4 cut(s) | 518, 902, 975, 1144 |
| BciVI | GTATCC | 1 cut(s) | 1268 |
| BcoDI | GTCTC | 2 cut(s) | 167, 713 |
| BfaI | CTAG | 6 cut(s) | 77, 551, 671, 723, 1184, 1285 |
| BfmI | CTRYAG | 2 cut(s) | 988, 1150 |
| BfuAI | ACCTGC | 1 cut(s) | 218 |
| BfuI | GTATCC | 1 cut(s) | 1268 |
| BglII | AGATCT | 1 cut(s) | 205 |
| BisI | GCNGC | 6 cut(s) | 287, 294, 472, 803, 844, 1050 |
| BlsI | GCNGC | 6 cut(s) | 288, 295, 473, 804, 845, 1051 |
| Bme1390I | CCNGG | 4 cut(s) | 518, 902, 975, 1144 |
| BmgT120I | GGNCC | 6 cut(s) | 69, 457, 734, 1175, 1176, 1187 |
| BmiI | GGNNCC | 7 cut(s) | 118, 487, 736, 761, 1122, 1177, 1178 |
| BmrFI | CCNGG | 4 cut(s) | 518, 902, 975, 1144 |
| BmrI | ACTGGG | 1 cut(s) | 1243 |
| BmsI | GCATC | 3 cut(s) | 718, 900, 1240 |
| BmuI | ACTGGG | 1 cut(s) | 1243 |
| BpmI | CTGGAG | 1 cut(s) | 539 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1239 |
| BsaHI | GRCGYC | 1 cut(s) | 1140 |
| BsaJI | CCNNGG | 2 cut(s) | 453, 1254 |
| BsaWI | WCCGGW | 2 cut(s) | 533, 664 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 470, 500, 1010, 1040 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 141, 272, 401, 671, 826, 1184, 1185, 1260 |
| Bse118I | RCCGGY | 4 cut(s) | 386, 533, 664, 811 |
| Bse1I | ACTGG | 3 cut(s) | 59, 607, 1238 |
| BseBI | CCWGG | 4 cut(s) | 518, 902, 975, 1144 |
| BseDI | CCNNGG | 2 cut(s) | 453, 1254 |
| BseGI | GGATG | 4 cut(s) | 709, 795, 860, 910 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 141, 272, 401, 671, 826, 1184, 1185, 1260 |
| BseMII | CTCAG | 2 cut(s) | 1075, 1253 |
| BseNI | ACTGG | 3 cut(s) | 59, 607, 1238 |
| BsePI | GCGCGC | 2 cut(s) | 999, 1001 |
| BseRI | GAGGAG | 1 cut(s) | 577 |
| BseSI | GKGCMC | 2 cut(s) | 121, 1179 |
| BseX3I | CGGCCG | 1 cut(s) | 813 |
| BseXI | GCAGC | 4 cut(s) | 280, 483, 789, 1036 |
| BseYI | CCCAGC | 2 cut(s) | 111, 459 |
| BsgI | GTGCAG | 1 cut(s) | 565 |
| Bsh1285I | CGRYCG | 3 cut(s) | 469, 534, 816 |
| BshFI | GGCC | 7 cut(s) | 70, 458, 642, 735, 815, 1177, 1189 |
| BshNI | GGYRCC | 2 cut(s) | 116, 1120 |
| BshTI | ACCGGT | 2 cut(s) | 533, 664 |
| BsiEI | CGRYCG | 3 cut(s) | 469, 534, 816 |
| BsiHKAI | GWGCWC | 2 cut(s) | 525, 679 |
| BsiSI | CCGG | 4 cut(s) | 387, 534, 665, 812 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 141, 272, 401, 671, 826, 1184, 1185, 1260 |
| BsmAI | GTCTC | 2 cut(s) | 167, 713 |
| BsnI | GGCC | 7 cut(s) | 70, 458, 642, 735, 815, 1177, 1189 |
| Bsp120I | GGGCCC | 1 cut(s) | 1175 |
| Bsp1286I | GDGCHC | 5 cut(s) | 121, 525, 679, 1179, 1240 |
| Bsp143I | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| Bsp19I | CCATGG | 2 cut(s) | 453, 1254 |
| Bsp68I | TCGCGA | 2 cut(s) | 189, 789 |
| BspANI | GGCC | 7 cut(s) | 70, 458, 642, 735, 815, 1177, 1189 |
| BspCNI | CTCAG | 2 cut(s) | 1074, 1252 |
| BspLI | GGNNCC | 7 cut(s) | 118, 487, 736, 761, 1122, 1177, 1178 |
| BspMI | ACCTGC | 1 cut(s) | 218 |
| BspPI | GGATC | 4 cut(s) | 754, 767, 974, 1052 |
| BspT107I | GGYRCC | 2 cut(s) | 116, 1120 |
| BsrBI | CCGCTC | 1 cut(s) | 289 |
| BsrFI | RCCGGY | 4 cut(s) | 386, 533, 664, 811 |
| BsrI | ACTGG | 3 cut(s) | 59, 607, 1238 |
| BssAI | RCCGGY | 4 cut(s) | 386, 533, 664, 811 |
| BssECI | CCNNGG | 2 cut(s) | 453, 1254 |
| BssHII | GCGCGC | 2 cut(s) | 999, 1001 |
| BssMI | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| BssNI | GRCGYC | 1 cut(s) | 1140 |
| BssT1I | CCWWGG | 2 cut(s) | 453, 1254 |
| Bst2UI | CCWGG | 4 cut(s) | 518, 902, 975, 1144 |
| Bst4CI | ACNGT | 4 cut(s) | 467, 482, 686, 992 |
| Bst6I | CTCTTC | 1 cut(s) | 621 |
| BstACI | GRCGYC | 1 cut(s) | 1140 |
| BstC8I | GCNNGC | 8 cut(s) | 198, 214, 291, 392, 813, 1001, 1003, 1197 |
| BstDEI | CTNAG | 3 cut(s) | 1033, 1061, 1239 |
| BstDSI | CCRYGG | 2 cut(s) | 453, 1254 |
| BstF5I | GGATG | 4 cut(s) | 709, 795, 860, 910 |
| BstHHI | GCGC | 4 cut(s) | 202, 1001, 1003, 1005 |
| BstKTI | GATC | 7 cut(s) | 208, 250, 762, 982, 1026, 1047, 1225 |
| BstMAI | GTCTC | 2 cut(s) | 167, 713 |
| BstMBI | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| BstMCI | CGRYCG | 3 cut(s) | 469, 534, 816 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 732, 808, 984, 1007, 1055 |
| BstNI | CCWGG | 4 cut(s) | 518, 902, 975, 1144 |
| BstNSI | RCATGY | 1 cut(s) | 730 |
| BstSCI | CCNGG | 4 cut(s) | 516, 900, 973, 1142 |
| BstSFI | CTRYAG | 2 cut(s) | 988, 1150 |
| BstSLI | GKGCMC | 2 cut(s) | 121, 1179 |
| BstV1I | GCAGC | 4 cut(s) | 280, 483, 789, 1036 |
| BstX2I | RGATCY | 2 cut(s) | 205, 759 |
| BstYI | RGATCY | 2 cut(s) | 205, 759 |
| BstZI | CGGCCG | 1 cut(s) | 813 |
| BsuI | GTATCC | 1 cut(s) | 1268 |
| BsuRI | GGCC | 7 cut(s) | 70, 458, 642, 735, 815, 1177, 1189 |
| BtgI | CCRYGG | 2 cut(s) | 453, 1254 |
| BtgZI | GCGATG | 3 cut(s) | 511, 804, 980 |
| BtsCI | GGATG | 4 cut(s) | 709, 795, 860, 910 |
| BtsIMutI | CAGTG | 3 cut(s) | 487, 600, 839 |
| BtuMI | TCGCGA | 2 cut(s) | 189, 789 |
| BveI | ACCTGC | 1 cut(s) | 218 |
| Cac8I | GCNNGC | 8 cut(s) | 198, 214, 291, 392, 813, 1001, 1003, 1197 |
| CaiI | CAGNNNCTG | 1 cut(s) | 111 |
| CfoI | GCGC | 4 cut(s) | 202, 1001, 1003, 1005 |
| Cfr10I | RCCGGY | 4 cut(s) | 386, 533, 664, 811 |
| Cfr13I | GGNCC | 6 cut(s) | 69, 457, 734, 1175, 1176, 1187 |
| CseI | GACGC | 3 cut(s) | 12, 463, 1148 |
| Csp6I | GTAC | 5 cut(s) | 606, 668, 856, 895, 1135 |
| CspAI | ACCGGT | 2 cut(s) | 533, 664 |
| CviAII | CATG | 4 cut(s) | 419, 454, 727, 1255 |
| CviQI | GTAC | 5 cut(s) | 606, 668, 856, 895, 1135 |
| DdeI | CTNAG | 3 cut(s) | 1033, 1061, 1239 |
| DpnI | GATC | 7 cut(s) | 207, 249, 761, 981, 1025, 1046, 1224 |
| DpnII | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| DraIII | CACNNNGTG | 1 cut(s) | 272 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 727 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 727 |
| EaeI | YGGCCR | 2 cut(s) | 640, 813 |
| EagI | CGGCCG | 1 cut(s) | 813 |
| Eam1104I | CTCTTC | 1 cut(s) | 621 |
| EarI | CTCTTC | 1 cut(s) | 621 |
| EciI | GGCGGA | 1 cut(s) | 798 |
| Ecl136II | GAGCTC | 1 cut(s) | 677 |
| EclXI | CGGCCG | 1 cut(s) | 813 |
| Eco130I | CCWWGG | 2 cut(s) | 453, 1254 |
| Eco24I | GRGCYC | 3 cut(s) | 679, 1179, 1240 |
| Eco52I | CGGCCG | 1 cut(s) | 813 |
| Eco53kI | GAGCTC | 1 cut(s) | 677 |
| Eco57I | CTGAAG | 2 cut(s) | 322, 1287 |
| EcoICRI | GAGCTC | 1 cut(s) | 677 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1176, 1187 |
| EcoRII | CCWGG | 4 cut(s) | 516, 900, 973, 1142 |
| EcoT14I | CCWWGG | 2 cut(s) | 453, 1254 |
| EcoT22I | ATGCAT | 1 cut(s) | 711 |
| EcoT38I | GRGCYC | 3 cut(s) | 679, 1179, 1240 |
| ErhI | CCWWGG | 2 cut(s) | 453, 1254 |
| FaeI | CATG | 4 cut(s) | 422, 457, 730, 1258 |
| FatI | CATG | 4 cut(s) | 418, 453, 726, 1254 |
| FauI | CCCGC | 4 cut(s) | 189, 501, 807, 1221 |
| Fnu4HI | GCNGC | 6 cut(s) | 287, 294, 472, 803, 844, 1050 |
| FokI | GGATG | 4 cut(s) | 696, 782, 847, 917 |
| FriOI | GRGCYC | 3 cut(s) | 679, 1179, 1240 |
| Fsp4HI | GCNGC | 6 cut(s) | 287, 294, 472, 803, 844, 1050 |
| FspBI | CTAG | 6 cut(s) | 77, 551, 671, 723, 1184, 1285 |
| GlaI | GCGC | 4 cut(s) | 201, 1000, 1002, 1004 |
| GluI | GCNGC | 6 cut(s) | 287, 294, 472, 803, 844, 1050 |
| GsaI | CCCAGC | 2 cut(s) | 115, 463 |
| GsuI | CTGGAG | 1 cut(s) | 539 |
| HaeIII | GGCC | 7 cut(s) | 70, 458, 642, 735, 815, 1177, 1189 |
| HapII | CCGG | 4 cut(s) | 387, 534, 665, 812 |
| HgaI | GACGC | 3 cut(s) | 12, 463, 1148 |
| HhaI | GCGC | 4 cut(s) | 202, 1001, 1003, 1005 |
| Hin1I | GRCGYC | 1 cut(s) | 1140 |
| Hin1II | CATG | 4 cut(s) | 422, 457, 730, 1258 |
| Hin6I | GCGC | 4 cut(s) | 200, 999, 1001, 1003 |
| HinP1I | GCGC | 4 cut(s) | 200, 999, 1001, 1003 |
| HincII | GTYRAC | 1 cut(s) | 439 |
| HindII | GTYRAC | 1 cut(s) | 439 |
| HinfI | GANTC | 7 cut(s) | 91, 342, 431, 540, 613, 942, 1170 |
| HpaII | CCGG | 4 cut(s) | 387, 534, 665, 812 |
| HphI | GGTGA | 3 cut(s) | 376, 436, 1007 |
| Hpy166II | GTNNAC | 2 cut(s) | 439, 478 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 341, 877 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 188, 310, 757, 788, 1042, 1229 |
| Hpy8I | GTNNAC | 2 cut(s) | 439, 478 |
| Hpy99I | CGWCG | 4 cut(s) | 69, 628, 653, 1142 |
| HpyAV | CCTTC | 4 cut(s) | 10, 81, 980, 1265 |
| HpyCH4III | ACNGT | 4 cut(s) | 467, 482, 686, 992 |
| HpyCH4IV | ACGT | 1 cut(s) | 648 |
| HpyCH4V | TGCA | 4 cut(s) | 418, 567, 582, 709 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 732, 808, 984, 1007, 1055 |
| HpyF3I | CTNAG | 3 cut(s) | 1033, 1061, 1239 |
| HpySE526I | ACGT | 1 cut(s) | 648 |
| Hsp92I | GRCGYC | 1 cut(s) | 1140 |
| Hsp92II | CATG | 4 cut(s) | 422, 457, 730, 1258 |
| HspAI | GCGC | 4 cut(s) | 200, 999, 1001, 1003 |
| KroI | GCCGGC | 1 cut(s) | 811 |
| KroNI | GCCGGC | 1 cut(s) | 813 |
| Kzo9I | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| LmnI | GCTCC | 5 cut(s) | 491, 520, 674, 1084, 1215 |
| Lsp1109I | GCAGC | 4 cut(s) | 280, 483, 789, 1036 |
| LweI | GCATC | 3 cut(s) | 718, 900, 1240 |
| MaeI | CTAG | 6 cut(s) | 77, 551, 671, 723, 1184, 1285 |
| MaeII | ACGT | 1 cut(s) | 648 |
| MalI | GATC | 7 cut(s) | 207, 249, 761, 981, 1025, 1046, 1224 |
| MauBI | CGCGCGCG | 1 cut(s) | 999 |
| MbiI | CCGCTC | 1 cut(s) | 289 |
| MboI | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| MboII | GAAGA | 6 cut(s) | 254, 608, 772, 951, 1217, 1280 |
| MfeI | CAATTG | 1 cut(s) | 1115 |
| MflI | RGATCY | 2 cut(s) | 205, 759 |
| MhlI | GDGCHC | 5 cut(s) | 121, 525, 679, 1179, 1240 |
| MlsI | TGGCCA | 1 cut(s) | 642 |
| MluCI | AATT | 4 cut(s) | 425, 927, 1100, 1115 |
| MluNI | TGGCCA | 1 cut(s) | 642 |
| MlyI | GAGTC | 2 cut(s) | 85, 607 |
| MmeI | TCCRAC | 1 cut(s) | 483 |
| Mox20I | TGGCCA | 1 cut(s) | 642 |
| Mph1103I | ATGCAT | 1 cut(s) | 711 |
| MroNI | GCCGGC | 1 cut(s) | 811 |
| MscI | TGGCCA | 1 cut(s) | 642 |
| MseI | TTAA | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 642 |
| MspA1I | CMGCKG | 2 cut(s) | 802, 1216 |
| MspI | CCGG | 4 cut(s) | 387, 534, 665, 812 |
| MspR9I | CCNGG | 4 cut(s) | 518, 902, 975, 1144 |
| MunI | CAATTG | 1 cut(s) | 1115 |
| MvaI | CCWGG | 4 cut(s) | 518, 902, 975, 1144 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 732, 808, 984, 1007, 1055 |
| NaeI | GCCGGC | 1 cut(s) | 813 |
| NcoI | CCATGG | 2 cut(s) | 453, 1254 |
| NdeII | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| NgoMIV | GCCGGC | 1 cut(s) | 811 |
| NlaIII | CATG | 4 cut(s) | 422, 457, 730, 1258 |
| NlaIV | GGNNCC | 7 cut(s) | 118, 487, 736, 761, 1122, 1177, 1178 |
| NruI | TCGCGA | 2 cut(s) | 189, 789 |
| NsiI | ATGCAT | 1 cut(s) | 711 |
| NspI | RCATGY | 1 cut(s) | 730 |
| PauI | GCGCGC | 2 cut(s) | 999, 1001 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 471 |
| PdiI | GCCGGC | 1 cut(s) | 813 |
| PfeI | GAWTC | 5 cut(s) | 342, 431, 540, 942, 1170 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 272, 826 |
| PfoI | TCCNGGA | 1 cut(s) | 900 |
| PinAI | ACCGGT | 2 cut(s) | 533, 664 |
| PkrI | GCNGC | 6 cut(s) | 288, 295, 473, 804, 845, 1051 |
| PleI | GAGTC | 2 cut(s) | 85, 607 |
| PpsI | GAGTC | 2 cut(s) | 85, 607 |
| PshBI | ATTAAT | 1 cut(s) | 11 |
| Psp124BI | GAGCTC | 1 cut(s) | 679 |
| Psp6I | CCWGG | 4 cut(s) | 516, 900, 973, 1142 |
| PspFI | CCCAGC | 2 cut(s) | 111, 459 |
| PspGI | CCWGG | 4 cut(s) | 516, 900, 973, 1142 |
| PspN4I | GGNNCC | 7 cut(s) | 118, 487, 736, 761, 1122, 1177, 1178 |
| PspOMI | GGGCCC | 1 cut(s) | 1175 |
| PspPI | GGNCC | 6 cut(s) | 69, 457, 734, 1175, 1176, 1187 |
| PstNI | CAGNNNCTG | 1 cut(s) | 111 |
| PsuI | RGATCY | 2 cut(s) | 205, 759 |
| PteI | GCGCGC | 2 cut(s) | 999, 1001 |
| RruI | TCGCGA | 2 cut(s) | 189, 789 |
| RsaI | GTAC | 5 cut(s) | 607, 669, 857, 896, 1136 |
| RsaNI | GTAC | 5 cut(s) | 606, 668, 856, 895, 1135 |
| SacI | GAGCTC | 1 cut(s) | 679 |
| SaqAI | TTAA | 1 cut(s) | 11 |
| SatI | GCNGC | 6 cut(s) | 287, 294, 472, 803, 844, 1050 |
| Sau3AI | GATC | 7 cut(s) | 205, 247, 759, 979, 1023, 1044, 1222 |
| Sau96I | GGNCC | 6 cut(s) | 69, 457, 734, 1175, 1176, 1187 |
| SchI | GAGTC | 2 cut(s) | 85, 607 |
| ScrFI | CCNGG | 4 cut(s) | 518, 902, 975, 1144 |
| SduI | GDGCHC | 5 cut(s) | 121, 525, 679, 1179, 1240 |
| SfaNI | GCATC | 3 cut(s) | 718, 900, 1240 |
| SfcI | CTRYAG | 2 cut(s) | 988, 1150 |
| Sse9I | AATT | 4 cut(s) | 425, 927, 1100, 1115 |
| SspMI | CTAG | 6 cut(s) | 77, 551, 671, 723, 1184, 1285 |
| SstI | GAGCTC | 1 cut(s) | 679 |
| StyD4I | CCNGG | 4 cut(s) | 516, 900, 973, 1142 |
| StyI | CCWWGG | 2 cut(s) | 453, 1254 |
| TaaI | ACNGT | 4 cut(s) | 467, 482, 686, 992 |
| TaiI | ACGT | 1 cut(s) | 651 |
| TaqI | TCGA | 3 cut(s) | 130, 429, 449 |
| TaqII | GACCGA | 2 cut(s) | 335, 1094 |
| TasI | AATT | 4 cut(s) | 425, 927, 1100, 1115 |
| TauI | GCSGC | 2 cut(s) | 289, 846 |
| TfiI | GAWTC | 5 cut(s) | 342, 431, 540, 942, 1170 |
| Tru1I | TTAA | 1 cut(s) | 11 |
| Tru9I | TTAA | 1 cut(s) | 11 |
| TscAI | CASTG | 3 cut(s) | 487, 607, 839 |
| TseI | GCWGC | 4 cut(s) | 293, 471, 802, 1049 |
| TspDTI | ATGAA | 2 cut(s) | 29, 562 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| TspRI | CASTG | 3 cut(s) | 487, 607, 839 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 272, 826 |
| VspI | ATTAAT | 1 cut(s) | 11 |
| XceI | RCATGY | 1 cut(s) | 730 |
| XspI | CTAG | 6 cut(s) | 77, 551, 671, 723, 1184, 1285 |
| Zsp2I | ATGCAT | 1 cut(s) | 711 |