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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 266 |
| AccII | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| AclWI | GGATC | 3 cut(s) | 827, 829, 842 |
| AcoI | YGGCCR | 3 cut(s) | 234, 353, 715 |
| AcsI | RAATTY | 1 cut(s) | 644 |
| AcyI | GRCGYC | 1 cut(s) | 240 |
| AfaI | GTAC | 6 cut(s) | 180, 682, 770, 932, 971, 1005 |
| AfeI | AGCGCT | 1 cut(s) | 550 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 270, 345, 476, 746 |
| AgsI | TTSAA | 5 cut(s) | 58, 196, 206, 310, 1034 |
| AjnI | CCWGG | 3 cut(s) | 298, 771, 1048 |
| AluBI | AGCT | 4 cut(s) | 34, 379, 1025, 1147 |
| AluI | AGCT | 4 cut(s) | 34, 379, 1025, 1147 |
| Alw21I | GWGCWC | 1 cut(s) | 600 |
| Alw26I | GTCTC | 3 cut(s) | 157, 216, 788 |
| AlwI | GGATC | 3 cut(s) | 827, 829, 842 |
| Aor51HI | AGCGCT | 1 cut(s) | 550 |
| ApeKI | GCWGC | 4 cut(s) | 546, 877, 1092, 1124 |
| ApoI | RAATTY | 1 cut(s) | 644 |
| AspLEI | GCGC | 4 cut(s) | 27, 217, 551, 1055 |
| AspS9I | GGNCC | 4 cut(s) | 273, 532, 703, 809 |
| AsuC2I | CCSGG | 3 cut(s) | 189, 371, 593 |
| AsuHPI | GGTGA | 4 cut(s) | 60, 427, 505, 511 |
| BaeGI | GKGCMC | 1 cut(s) | 351 |
| BalI | TGGCCA | 1 cut(s) | 355 |
| BamHI | GGATCC | 1 cut(s) | 834 |
| BauI | CACGAG | 1 cut(s) | 405 |
| BbsI | GAAGAC | 1 cut(s) | 54 |
| Bbv12I | GWGCWC | 1 cut(s) | 600 |
| BbvI | GCAGC | 4 cut(s) | 558, 864, 1104, 1111 |
| BccI | CCATC | 7 cut(s) | 251, 364, 371, 464, 470, 479, 809 |
| BceAI | ACGGC | 4 cut(s) | 92, 271, 717, 730 |
| BciT130I | CCWGG | 3 cut(s) | 300, 773, 1050 |
| BciVI | GTATCC | 1 cut(s) | 332 |
| BclI | TGATCA | 1 cut(s) | 892 |
| BcnI | CCSGG | 3 cut(s) | 189, 371, 593 |
| BcoDI | GTCTC | 3 cut(s) | 157, 216, 788 |
| BfaI | CTAG | 2 cut(s) | 167, 212 |
| BfmI | CTRYAG | 1 cut(s) | 1063 |
| BfoI | RGCGCY | 4 cut(s) | 28, 218, 552, 1056 |
| BfuI | GTATCC | 1 cut(s) | 332 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1179 |
| BglII | AGATCT | 1 cut(s) | 409 |
| BisI | GCNGC | 8 cut(s) | 218, 429, 547, 718, 878, 919, 1093, 1125 |
| BlpI | GCTNAGC | 1 cut(s) | 914 |
| BlsI | GCNGC | 8 cut(s) | 219, 430, 548, 719, 879, 920, 1094, 1126 |
| BmcAI | AGTACT | 1 cut(s) | 1005 |
| Bme1390I | CCNGG | 6 cut(s) | 189, 300, 371, 593, 773, 1050 |
| BmgT120I | GGNCC | 4 cut(s) | 273, 532, 703, 809 |
| BmiI | GGNNCC | 3 cut(s) | 751, 811, 836 |
| BmrFI | CCNGG | 6 cut(s) | 189, 300, 371, 593, 773, 1050 |
| BmrI | ACTGGG | 1 cut(s) | 1016 |
| BmsI | GCATC | 2 cut(s) | 793, 975 |
| BmuI | ACTGGG | 1 cut(s) | 1016 |
| BpiI | GAAGAC | 1 cut(s) | 54 |
| BpmI | CTGGAG | 2 cut(s) | 14, 20 |
| Bpu10I | CCTNAGC | 1 cut(s) | 731 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 914 |
| BpuMI | CCSGG | 3 cut(s) | 189, 371, 593 |
| Bsa29I | ATCGAT | 1 cut(s) | 474 |
| BsaHI | GRCGYC | 1 cut(s) | 240 |
| BsaJI | CCNNGG | 4 cut(s) | 299, 528, 569, 718 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 270, 345, 476, 746 |
| Bse118I | RCCGGY | 2 cut(s) | 608, 886 |
| Bse1I | ACTGG | 7 cut(s) | 148, 177, 281, 356, 466, 682, 1011 |
| BseBI | CCWGG | 3 cut(s) | 300, 773, 1050 |
| BseCI | ATCGAT | 1 cut(s) | 474 |
| BseDI | CCNNGG | 4 cut(s) | 299, 528, 569, 718 |
| BseGI | GGATG | 3 cut(s) | 356, 784, 870 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 270, 345, 476, 746 |
| BseMII | CTCAG | 1 cut(s) | 928 |
| BseNI | ACTGG | 7 cut(s) | 148, 177, 281, 356, 466, 682, 1011 |
| BseRI | GAGGAG | 1 cut(s) | 930 |
| BseSI | GKGCMC | 1 cut(s) | 351 |
| BseX3I | CGGCCG | 2 cut(s) | 234, 715 |
| BseXI | GCAGC | 4 cut(s) | 558, 864, 1104, 1111 |
| BseYI | CCCAGC | 1 cut(s) | 1021 |
| Bsh1236I | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| Bsh1285I | CGRYCG | 4 cut(s) | 185, 237, 609, 718 |
| BshVI | ATCGAT | 1 cut(s) | 474 |
| BsiEI | CGRYCG | 4 cut(s) | 185, 237, 609, 718 |
| BsiHKAI | GWGCWC | 1 cut(s) | 600 |
| BsiSI | CCGG | 6 cut(s) | 188, 233, 371, 592, 609, 887 |
| BslFI | GGGAC | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 270, 345, 476, 746 |
| BsmAI | GTCTC | 3 cut(s) | 157, 216, 788 |
| BsmFI | GGGAC | 1 cut(s) | 317 |
| BsmI | GAATGC | 1 cut(s) | 959 |
| Bsp1286I | GDGCHC | 2 cut(s) | 351, 600 |
| Bsp143I | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 914 |
| Bsp19I | CCATGG | 1 cut(s) | 528 |
| Bsp68I | TCGCGA | 1 cut(s) | 864 |
| BspCNI | CTCAG | 1 cut(s) | 927 |
| BspDI | ATCGAT | 1 cut(s) | 474 |
| BspFNI | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| BspLI | GGNNCC | 3 cut(s) | 751, 811, 836 |
| BspPI | GGATC | 3 cut(s) | 827, 829, 842 |
| BsrBI | CCGCTC | 1 cut(s) | 266 |
| BsrFI | RCCGGY | 2 cut(s) | 608, 886 |
| BsrI | ACTGG | 7 cut(s) | 148, 177, 281, 356, 466, 682, 1011 |
| BssAI | RCCGGY | 2 cut(s) | 608, 886 |
| BssECI | CCNNGG | 4 cut(s) | 299, 528, 569, 718 |
| BssMI | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| BssNI | GRCGYC | 1 cut(s) | 240 |
| BssSI | CACGAG | 1 cut(s) | 405 |
| BssT1I | CCWWGG | 1 cut(s) | 528 |
| Bst2BI | CACGAG | 1 cut(s) | 405 |
| Bst2UI | CCWGG | 3 cut(s) | 300, 773, 1050 |
| Bst4CI | ACNGT | 3 cut(s) | 183, 497, 557 |
| Bst6I | CTCTTC | 1 cut(s) | 696 |
| BstACI | GRCGYC | 1 cut(s) | 240 |
| BstC8I | GCNNGC | 5 cut(s) | 260, 264, 418, 482, 1171 |
| BstDEI | CTNAG | 3 cut(s) | 731, 901, 914 |
| BstDSI | CCRYGG | 2 cut(s) | 528, 718 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 744 |
| BstF5I | GGATG | 3 cut(s) | 356, 784, 870 |
| BstFNI | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| BstH2I | RGCGCY | 4 cut(s) | 28, 218, 552, 1056 |
| BstHHI | GCGC | 4 cut(s) | 27, 217, 551, 1055 |
| BstKTI | GATC | 7 cut(s) | 6, 412, 822, 837, 895, 1072, 1101 |
| BstMAI | GTCTC | 3 cut(s) | 157, 216, 788 |
| BstMBI | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| BstMCI | CGRYCG | 4 cut(s) | 185, 237, 609, 718 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 31, 490, 1059, 1179 |
| BstNI | CCWGG | 3 cut(s) | 300, 773, 1050 |
| BstNSI | RCATGY | 1 cut(s) | 1080 |
| BstSCI | CCNGG | 6 cut(s) | 187, 298, 369, 591, 771, 1048 |
| BstSFI | CTRYAG | 1 cut(s) | 1063 |
| BstSLI | GKGCMC | 1 cut(s) | 351 |
| BstUI | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| BstV1I | GCAGC | 4 cut(s) | 558, 864, 1104, 1111 |
| BstV2I | GAAGAC | 1 cut(s) | 54 |
| BstX2I | RGATCY | 3 cut(s) | 409, 819, 834 |
| BstYI | RGATCY | 3 cut(s) | 409, 819, 834 |
| BstZI | CGGCCG | 2 cut(s) | 234, 715 |
| Bsu15I | ATCGAT | 1 cut(s) | 474 |
| BsuI | GTATCC | 1 cut(s) | 332 |
| BsuTUI | ATCGAT | 1 cut(s) | 474 |
| BtgI | CCRYGG | 2 cut(s) | 528, 718 |
| BtgZI | GCGATG | 2 cut(s) | 229, 879 |
| BtsCI | GGATG | 3 cut(s) | 356, 784, 870 |
| BtsIMutI | CAGTG | 6 cut(s) | 141, 349, 459, 562, 675, 914 |
| BtuMI | TCGCGA | 1 cut(s) | 864 |
| Cac8I | GCNNGC | 5 cut(s) | 260, 264, 418, 482, 1171 |
| CfoI | GCGC | 4 cut(s) | 27, 217, 551, 1055 |
| Cfr10I | RCCGGY | 2 cut(s) | 608, 886 |
| Cfr13I | GGNCC | 4 cut(s) | 273, 532, 703, 809 |
| Cfr42I | CCGCGG | 1 cut(s) | 721 |
| ClaI | ATCGAT | 1 cut(s) | 474 |
| CseI | GACGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 6 cut(s) | 179, 681, 769, 931, 970, 1004 |
| CviAII | CATG | 3 cut(s) | 529, 539, 1077 |
| CviQI | GTAC | 6 cut(s) | 179, 681, 769, 931, 970, 1004 |
| DdeI | CTNAG | 3 cut(s) | 731, 901, 914 |
| DpnI | GATC | 7 cut(s) | 5, 411, 821, 836, 894, 1071, 1100 |
| DpnII | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| EaeI | YGGCCR | 3 cut(s) | 234, 353, 715 |
| EagI | CGGCCG | 2 cut(s) | 234, 715 |
| Eam1104I | CTCTTC | 1 cut(s) | 696 |
| EarI | CTCTTC | 1 cut(s) | 696 |
| EciI | GGCGGA | 2 cut(s) | 389, 627 |
| EclXI | CGGCCG | 2 cut(s) | 234, 715 |
| Eco130I | CCWWGG | 1 cut(s) | 528 |
| Eco47III | AGCGCT | 1 cut(s) | 550 |
| Eco52I | CGGCCG | 2 cut(s) | 234, 715 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 744 |
| EcoRII | CCWGG | 3 cut(s) | 298, 771, 1048 |
| EcoT14I | CCWWGG | 1 cut(s) | 528 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| ErhI | CCWWGG | 1 cut(s) | 528 |
| FaeI | CATG | 3 cut(s) | 532, 542, 1080 |
| FaiI | YATR | 8 cut(s) | 390, 530, 540, 782, 964, 1078, 1118, 1143 |
| FaqI | GGGAC | 1 cut(s) | 317 |
| FatI | CATG | 3 cut(s) | 528, 538, 1076 |
| FauI | CCCGC | 2 cut(s) | 271, 882 |
| FbaI | TGATCA | 1 cut(s) | 892 |
| Fnu4HI | GCNGC | 8 cut(s) | 218, 429, 547, 718, 878, 919, 1093, 1125 |
| FokI | GGATG | 3 cut(s) | 343, 771, 857 |
| Fsp4HI | GCNGC | 8 cut(s) | 218, 429, 547, 718, 878, 919, 1093, 1125 |
| FspBI | CTAG | 2 cut(s) | 167, 212 |
| GlaI | GCGC | 4 cut(s) | 26, 216, 550, 1054 |
| GluI | GCNGC | 8 cut(s) | 218, 429, 547, 718, 878, 919, 1093, 1125 |
| GsaI | CCCAGC | 1 cut(s) | 1025 |
| GsuI | CTGGAG | 2 cut(s) | 14, 20 |
| HaeII | RGCGCY | 4 cut(s) | 28, 218, 552, 1056 |
| HapII | CCGG | 6 cut(s) | 188, 233, 371, 592, 609, 887 |
| HgaI | GACGC | 1 cut(s) | 248 |
| HhaI | GCGC | 4 cut(s) | 27, 217, 551, 1055 |
| Hin1I | GRCGYC | 1 cut(s) | 240 |
| Hin1II | CATG | 3 cut(s) | 532, 542, 1080 |
| Hin6I | GCGC | 4 cut(s) | 25, 215, 549, 1053 |
| HinP1I | GCGC | 4 cut(s) | 25, 215, 549, 1053 |
| HinfI | GANTC | 7 cut(s) | 224, 295, 328, 506, 688, 1017, 1041 |
| HpaII | CCGG | 6 cut(s) | 188, 233, 371, 592, 609, 887 |
| HphI | GGTGA | 4 cut(s) | 60, 427, 505, 511 |
| Hpy188I | TCNGA | 3 cut(s) | 290, 952, 1111 |
| Hpy188III | TCNNGA | 4 cut(s) | 325, 832, 863, 977 |
| Hpy99I | CGWCG | 4 cut(s) | 242, 273, 703, 864 |
| HpyAV | CCTTC | 7 cut(s) | 18, 87, 200, 285, 526, 983, 1055 |
| HpyCH4III | ACNGT | 3 cut(s) | 183, 497, 557 |
| HpyCH4V | TGCA | 3 cut(s) | 493, 784, 996 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 31, 490, 1059, 1179 |
| HpyF3I | CTNAG | 3 cut(s) | 731, 901, 914 |
| Hsp92I | GRCGYC | 1 cut(s) | 240 |
| Hsp92II | CATG | 3 cut(s) | 532, 542, 1080 |
| HspAI | GCGC | 4 cut(s) | 25, 215, 549, 1053 |
| Ksp22I | TGATCA | 1 cut(s) | 892 |
| KspI | CCGCGG | 1 cut(s) | 721 |
| Kzo9I | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| LmnI | GCTCC | 6 cut(s) | 39, 376, 595, 749, 1030, 1060 |
| Lsp1109I | GCAGC | 4 cut(s) | 558, 864, 1104, 1111 |
| LweI | GCATC | 2 cut(s) | 793, 975 |
| MaeI | CTAG | 2 cut(s) | 167, 212 |
| MaeIII | GTNAC | 3 cut(s) | 104, 433, 511 |
| MalI | GATC | 7 cut(s) | 5, 411, 821, 836, 894, 1071, 1100 |
| MbiI | CCGCTC | 1 cut(s) | 266 |
| MboI | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| MboII | GAAGA | 8 cut(s) | 46, 59, 407, 643, 651, 683, 1026, 1142 |
| MflI | RGATCY | 3 cut(s) | 409, 819, 834 |
| MhlI | GDGCHC | 2 cut(s) | 351, 600 |
| MlsI | TGGCCA | 1 cut(s) | 355 |
| MluCI | AATT | 7 cut(s) | 64, 500, 615, 644, 997, 1138, 1175 |
| MluNI | TGGCCA | 1 cut(s) | 355 |
| MlyI | GAGTC | 4 cut(s) | 218, 289, 500, 682 |
| Mox20I | TGGCCA | 1 cut(s) | 355 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MscI | TGGCCA | 1 cut(s) | 355 |
| MseI | TTAA | 1 cut(s) | 1137 |
| Msp20I | TGGCCA | 1 cut(s) | 355 |
| MspA1I | CMGCKG | 2 cut(s) | 720, 877 |
| MspI | CCGG | 6 cut(s) | 188, 233, 371, 592, 609, 887 |
| MspR9I | CCNGG | 6 cut(s) | 189, 300, 371, 593, 773, 1050 |
| Mva1269I | GAATGC | 1 cut(s) | 959 |
| MvaI | CCWGG | 3 cut(s) | 300, 773, 1050 |
| MvnI | CGCG | 5 cut(s) | 220, 428, 720, 864, 921 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 31, 490, 1059, 1179 |
| NciI | CCSGG | 3 cut(s) | 189, 371, 593 |
| NcoI | CCATGG | 1 cut(s) | 528 |
| NdeII | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| NlaIII | CATG | 3 cut(s) | 532, 542, 1080 |
| NlaIV | GGNNCC | 3 cut(s) | 751, 811, 836 |
| NmuCI | GTSAC | 2 cut(s) | 433, 511 |
| NruI | TCGCGA | 1 cut(s) | 864 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| NspI | RCATGY | 1 cut(s) | 1080 |
| PctI | GAATGC | 1 cut(s) | 959 |
| PfeI | GAWTC | 3 cut(s) | 328, 1017, 1041 |
| PflFI | GACNNNGTC | 1 cut(s) | 509 |
| PkrI | GCNGC | 8 cut(s) | 219, 430, 548, 719, 879, 920, 1094, 1126 |
| PleI | GAGTC | 4 cut(s) | 218, 289, 500, 682 |
| PpsI | GAGTC | 4 cut(s) | 218, 289, 500, 682 |
| Psp6I | CCWGG | 3 cut(s) | 298, 771, 1048 |
| PspFI | CCCAGC | 1 cut(s) | 1021 |
| PspGI | CCWGG | 3 cut(s) | 298, 771, 1048 |
| PspN4I | GGNNCC | 3 cut(s) | 751, 811, 836 |
| PspPI | GGNCC | 4 cut(s) | 273, 532, 703, 809 |
| PsuI | RGATCY | 3 cut(s) | 409, 819, 834 |
| PsyI | GACNNNGTC | 1 cut(s) | 509 |
| RruI | TCGCGA | 1 cut(s) | 864 |
| RsaI | GTAC | 6 cut(s) | 180, 682, 770, 932, 971, 1005 |
| RsaNI | GTAC | 6 cut(s) | 179, 681, 769, 931, 970, 1004 |
| SacII | CCGCGG | 1 cut(s) | 721 |
| SaqAI | TTAA | 1 cut(s) | 1137 |
| SatI | GCNGC | 8 cut(s) | 218, 429, 547, 718, 878, 919, 1093, 1125 |
| Sau3AI | GATC | 7 cut(s) | 3, 409, 819, 834, 892, 1069, 1098 |
| Sau96I | GGNCC | 4 cut(s) | 273, 532, 703, 809 |
| ScaI | AGTACT | 1 cut(s) | 1005 |
| SchI | GAGTC | 4 cut(s) | 218, 289, 500, 682 |
| ScrFI | CCNGG | 6 cut(s) | 189, 300, 371, 593, 773, 1050 |
| SduI | GDGCHC | 2 cut(s) | 351, 600 |
| SfaNI | GCATC | 2 cut(s) | 793, 975 |
| SfcI | CTRYAG | 1 cut(s) | 1063 |
| Sfr303I | CCGCGG | 1 cut(s) | 721 |
| SgrBI | CCGCGG | 1 cut(s) | 721 |
| Sse9I | AATT | 7 cut(s) | 64, 500, 615, 644, 997, 1138, 1175 |
| SspMI | CTAG | 2 cut(s) | 167, 212 |
| StyD4I | CCNGG | 6 cut(s) | 187, 298, 369, 591, 771, 1048 |
| StyI | CCWWGG | 1 cut(s) | 528 |
| TaaI | ACNGT | 3 cut(s) | 183, 497, 557 |
| TaqI | TCGA | 2 cut(s) | 474, 524 |
| TasI | AATT | 7 cut(s) | 64, 500, 615, 644, 997, 1138, 1175 |
| TatI | WGTACW | 1 cut(s) | 1003 |
| TauI | GCSGC | 4 cut(s) | 220, 431, 720, 921 |
| TfiI | GAWTC | 3 cut(s) | 328, 1017, 1041 |
| Tru1I | TTAA | 1 cut(s) | 1137 |
| Tru9I | TTAA | 1 cut(s) | 1137 |
| TscAI | CASTG | 6 cut(s) | 148, 356, 466, 562, 682, 914 |
| TseFI | GTSAC | 2 cut(s) | 433, 511 |
| TseI | GCWGC | 4 cut(s) | 546, 877, 1092, 1124 |
| Tsp45I | GTSAC | 2 cut(s) | 433, 511 |
| TspDTI | ATGAA | 1 cut(s) | 637 |
| TspGWI | ACGGA | 2 cut(s) | 848, 1053 |
| TspRI | CASTG | 6 cut(s) | 148, 356, 466, 562, 682, 914 |
| Tth111I | GACNNNGTC | 1 cut(s) | 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 744 |
| XapI | RAATTY | 1 cut(s) | 644 |
| XceI | RCATGY | 1 cut(s) | 1080 |
| XspI | CTAG | 2 cut(s) | 167, 212 |
| ZrmI | AGTACT | 1 cut(s) | 1005 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |