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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 61 |
| AccII | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| AciI | CCGC | 5 cut(s) | 6, 91, 264, 344, 459 |
| AclWI | GGATC | 1 cut(s) | 125 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 3 cut(s) | 119, 410, 414 |
| AfaI | GTAC | 2 cut(s) | 273, 594 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 148 |
| AgsI | TTSAA | 1 cut(s) | 562 |
| AjnI | CCWGG | 5 cut(s) | 20, 30, 81, 312, 444 |
| AluBI | AGCT | 5 cut(s) | 166, 208, 281, 368, 614 |
| AluI | AGCT | 5 cut(s) | 166, 208, 281, 368, 614 |
| Alw26I | GTCTC | 2 cut(s) | 227, 246 |
| AlwI | GGATC | 1 cut(s) | 125 |
| AoxI | GGCC | 6 cut(s) | 3, 33, 93, 346, 404, 414 |
| ApeKI | GCWGC | 3 cut(s) | 381, 505, 611 |
| AspLEI | GCGC | 2 cut(s) | 16, 91 |
| AspS9I | GGNCC | 4 cut(s) | 34, 93, 346, 461 |
| AsuC2I | CCSGG | 1 cut(s) | 350 |
| AsuHPI | GGTGA | 2 cut(s) | 122, 610 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| AxyI | CCTNAGG | 1 cut(s) | 537 |
| BanII | GRGCYC | 1 cut(s) | 438 |
| BbvI | GCAGC | 2 cut(s) | 393, 492 |
| BccI | CCATC | 1 cut(s) | 485 |
| BceAI | ACGGC | 2 cut(s) | 209, 401 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 311, 345 |
| BciT130I | CCWGG | 5 cut(s) | 22, 32, 83, 314, 446 |
| BcnI | CCSGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 2 cut(s) | 227, 246 |
| BfaI | CTAG | 2 cut(s) | 251, 551 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BisI | GCNGC | 4 cut(s) | 6, 382, 506, 612 |
| BlsI | GCNGC | 4 cut(s) | 7, 383, 507, 613 |
| Bme1390I | CCNGG | 6 cut(s) | 22, 32, 83, 314, 350, 446 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 4 cut(s) | 34, 93, 346, 461 |
| BmrFI | CCNGG | 6 cut(s) | 22, 32, 83, 314, 350, 446 |
| BmrI | ACTGGG | 1 cut(s) | 510 |
| BmuI | ACTGGG | 1 cut(s) | 510 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 344, 376 |
| BpmI | CTGGAG | 1 cut(s) | 230 |
| Bpu10I | CCTNAGC | 2 cut(s) | 220, 364 |
| BpuEI | CTTGAG | 1 cut(s) | 133 |
| BpuMI | CCSGG | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 82, 411 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 148 |
| Bse1I | ACTGG | 2 cut(s) | 307, 505 |
| Bse21I | CCTNAGG | 1 cut(s) | 537 |
| BseBI | CCWGG | 5 cut(s) | 22, 32, 83, 314, 446 |
| BseDI | CCNNGG | 3 cut(s) | 30, 82, 411 |
| BseGI | GGATG | 1 cut(s) | 531 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 148 |
| BseMII | CTCAG | 2 cut(s) | 222, 528 |
| BseNI | ACTGG | 2 cut(s) | 307, 505 |
| BseRI | GAGGAG | 1 cut(s) | 504 |
| BseXI | GCAGC | 2 cut(s) | 393, 492 |
| BseYI | CCCAGC | 2 cut(s) | 162, 204 |
| BsgI | GTGCAG | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| BshFI | GGCC | 6 cut(s) | 5, 35, 95, 348, 406, 416 |
| BsiSI | CCGG | 1 cut(s) | 349 |
| BslFI | GGGAC | 2 cut(s) | 124, 464 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 148 |
| BsmAI | GTCTC | 2 cut(s) | 227, 246 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 2 cut(s) | 124, 464 |
| BsnI | GGCC | 6 cut(s) | 5, 35, 95, 348, 406, 416 |
| Bsp1286I | GDGCHC | 1 cut(s) | 438 |
| Bsp143I | GATC | 1 cut(s) | 117 |
| Bsp68I | TCGCGA | 1 cut(s) | 122 |
| BspACI | CCGC | 5 cut(s) | 6, 91, 264, 344, 459 |
| BspANI | GGCC | 6 cut(s) | 5, 35, 95, 348, 406, 416 |
| BspCNI | CTCAG | 2 cut(s) | 223, 529 |
| BspFNI | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| BspMAI | CTGCAG | 1 cut(s) | 613 |
| BspPI | GGATC | 1 cut(s) | 125 |
| BspQI | GCTCTTC | 1 cut(s) | 430 |
| BsrI | ACTGG | 2 cut(s) | 307, 505 |
| BssECI | CCNNGG | 3 cut(s) | 30, 82, 411 |
| BssMI | GATC | 1 cut(s) | 117 |
| BssT1I | CCWWGG | 1 cut(s) | 411 |
| Bst2UI | CCWGG | 5 cut(s) | 22, 32, 83, 314, 446 |
| Bst4CI | ACNGT | 1 cut(s) | 175 |
| Bst6I | CTCTTC | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 5 cut(s) | 27, 93, 189, 262, 346 |
| BstDEI | CTNAG | 5 cut(s) | 220, 231, 364, 537, 615 |
| BstF5I | GGATG | 1 cut(s) | 531 |
| BstFNI | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| BstHHI | GCGC | 2 cut(s) | 16, 91 |
| BstKTI | GATC | 1 cut(s) | 120 |
| BstMAI | GTCTC | 2 cut(s) | 227, 246 |
| BstMBI | GATC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 22, 611 |
| BstNI | CCWGG | 5 cut(s) | 22, 32, 83, 314, 446 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 6 cut(s) | 20, 30, 81, 312, 348, 444 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstUI | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| BstV1I | GCAGC | 2 cut(s) | 393, 492 |
| Bsu36I | CCTNAGG | 1 cut(s) | 537 |
| BsuRI | GGCC | 6 cut(s) | 5, 35, 95, 348, 406, 416 |
| BtsCI | GGATG | 1 cut(s) | 531 |
| BtsIMutI | CAGTG | 2 cut(s) | 171, 300 |
| BtuMI | TCGCGA | 1 cut(s) | 122 |
| Cac8I | GCNNGC | 5 cut(s) | 27, 93, 189, 262, 346 |
| CfoI | GCGC | 2 cut(s) | 16, 91 |
| Cfr13I | GGNCC | 4 cut(s) | 34, 93, 346, 461 |
| CseI | GACGC | 2 cut(s) | 244, 299 |
| Csp6I | GTAC | 2 cut(s) | 272, 593 |
| CviAII | CATG | 2 cut(s) | 70, 194 |
| CviQI | GTAC | 2 cut(s) | 272, 593 |
| DdeI | CTNAG | 5 cut(s) | 220, 231, 364, 537, 615 |
| DpnI | GATC | 1 cut(s) | 119 |
| DpnII | GATC | 1 cut(s) | 117 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 430 |
| EarI | CTCTTC | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 411 |
| Eco24I | GRGCYC | 1 cut(s) | 438 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 3 cut(s) | 119, 410, 414 |
| Eco81I | CCTNAGG | 1 cut(s) | 537 |
| EcoRII | CCWGG | 5 cut(s) | 20, 30, 81, 312, 444 |
| EcoT14I | CCWWGG | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 1 cut(s) | 438 |
| ErhI | CCWWGG | 1 cut(s) | 411 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 2 cut(s) | 73, 197 |
| FaiI | YATR | 5 cut(s) | 71, 195, 342, 421, 622 |
| FaqI | GGGAC | 2 cut(s) | 124, 464 |
| FatI | CATG | 2 cut(s) | 69, 193 |
| FauI | CCCGC | 2 cut(s) | 84, 337 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 382, 506, 612 |
| FokI | GGATG | 1 cut(s) | 518 |
| FriOI | GRGCYC | 1 cut(s) | 438 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 382, 506, 612 |
| FspBI | CTAG | 2 cut(s) | 251, 551 |
| GlaI | GCGC | 2 cut(s) | 15, 90 |
| GluI | GCNGC | 4 cut(s) | 6, 382, 506, 612 |
| GsaI | CCCAGC | 2 cut(s) | 166, 208 |
| GsuI | CTGGAG | 1 cut(s) | 230 |
| HaeIII | GGCC | 6 cut(s) | 5, 35, 95, 348, 406, 416 |
| HapII | CCGG | 1 cut(s) | 349 |
| HgaI | GACGC | 2 cut(s) | 244, 299 |
| HhaI | GCGC | 2 cut(s) | 16, 91 |
| Hin1II | CATG | 2 cut(s) | 73, 197 |
| Hin6I | GCGC | 2 cut(s) | 14, 89 |
| HinP1I | GCGC | 2 cut(s) | 14, 89 |
| HincII | GTYRAC | 1 cut(s) | 298 |
| HindII | GTYRAC | 1 cut(s) | 298 |
| HinfI | GANTC | 4 cut(s) | 127, 145, 200, 353 |
| HpaII | CCGG | 1 cut(s) | 349 |
| HphI | GGTGA | 2 cut(s) | 122, 610 |
| Hpy166II | GTNNAC | 1 cut(s) | 298 |
| Hpy188I | TCNGA | 3 cut(s) | 232, 433, 618 |
| Hpy188III | TCNNGA | 2 cut(s) | 121, 149 |
| Hpy8I | GTNNAC | 1 cut(s) | 298 |
| HpyAV | CCTTC | 7 cut(s) | 143, 338, 367, 388, 538, 548, 586 |
| HpyCH4III | ACNGT | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 4 cut(s) | 73, 508, 590, 611 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 22, 611 |
| HpyF3I | CTNAG | 5 cut(s) | 220, 231, 364, 537, 615 |
| Hsp92II | CATG | 2 cut(s) | 73, 197 |
| HspAI | GCGC | 2 cut(s) | 14, 89 |
| Kzo9I | GATC | 1 cut(s) | 117 |
| LguI | GCTCTTC | 1 cut(s) | 430 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| Lsp1109I | GCAGC | 2 cut(s) | 393, 492 |
| MaeI | CTAG | 2 cut(s) | 251, 551 |
| MalI | GATC | 1 cut(s) | 119 |
| MboI | GATC | 1 cut(s) | 117 |
| MboII | GAAGA | 4 cut(s) | 136, 403, 417, 420 |
| MhlI | GDGCHC | 1 cut(s) | 438 |
| MluCI | AATT | 1 cut(s) | 453 |
| MlyI | GAGTC | 1 cut(s) | 362 |
| MseI | TTAA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 1 cut(s) | 208 |
| MspI | CCGG | 1 cut(s) | 349 |
| MspR9I | CCNGG | 6 cut(s) | 22, 32, 83, 314, 350, 446 |
| MvaI | CCWGG | 5 cut(s) | 22, 32, 83, 314, 446 |
| MvnI | CGCG | 4 cut(s) | 8, 91, 122, 264 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 22, 611 |
| NciI | CCSGG | 1 cut(s) | 350 |
| NdeII | GATC | 1 cut(s) | 117 |
| NlaIII | CATG | 2 cut(s) | 73, 197 |
| NruI | TCGCGA | 1 cut(s) | 122 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PciSI | GCTCTTC | 1 cut(s) | 430 |
| PfeI | GAWTC | 3 cut(s) | 127, 145, 200 |
| PflFI | GACNNNGTC | 1 cut(s) | 238 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 61 |
| PfoI | TCCNGGA | 1 cut(s) | 444 |
| PkrI | GCNGC | 4 cut(s) | 7, 383, 507, 613 |
| PleI | GAGTC | 1 cut(s) | 361 |
| PpsI | GAGTC | 1 cut(s) | 361 |
| Psp6I | CCWGG | 5 cut(s) | 20, 30, 81, 312, 444 |
| PspFI | CCCAGC | 2 cut(s) | 162, 204 |
| PspGI | CCWGG | 5 cut(s) | 20, 30, 81, 312, 444 |
| PspPI | GGNCC | 4 cut(s) | 34, 93, 346, 461 |
| PstI | CTGCAG | 1 cut(s) | 613 |
| PsyI | GACNNNGTC | 1 cut(s) | 238 |
| PvuII | CAGCTG | 1 cut(s) | 208 |
| RruI | TCGCGA | 1 cut(s) | 122 |
| RsaI | GTAC | 2 cut(s) | 273, 594 |
| RsaNI | GTAC | 2 cut(s) | 272, 593 |
| SapI | GCTCTTC | 1 cut(s) | 430 |
| SaqAI | TTAA | 1 cut(s) | 452 |
| SatI | GCNGC | 4 cut(s) | 6, 382, 506, 612 |
| Sau3AI | GATC | 1 cut(s) | 117 |
| Sau96I | GGNCC | 4 cut(s) | 34, 93, 346, 461 |
| SchI | GAGTC | 1 cut(s) | 362 |
| ScrFI | CCNGG | 6 cut(s) | 22, 32, 83, 314, 350, 446 |
| SduI | GDGCHC | 1 cut(s) | 438 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmlI | CTYRAG | 1 cut(s) | 112 |
| SmoI | CTYRAG | 1 cut(s) | 112 |
| Sse9I | AATT | 1 cut(s) | 453 |
| SsiI | CCGC | 5 cut(s) | 6, 91, 264, 344, 459 |
| SspMI | CTAG | 2 cut(s) | 251, 551 |
| StyD4I | CCNGG | 6 cut(s) | 20, 30, 81, 312, 348, 444 |
| StyI | CCWWGG | 1 cut(s) | 411 |
| TaaI | ACNGT | 1 cut(s) | 175 |
| TasI | AATT | 1 cut(s) | 453 |
| TatI | WGTACW | 2 cut(s) | 271, 592 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 3 cut(s) | 127, 145, 200 |
| Tru1I | TTAA | 1 cut(s) | 452 |
| Tru9I | TTAA | 1 cut(s) | 452 |
| TscAI | CASTG | 2 cut(s) | 178, 307 |
| TseI | GCWGC | 3 cut(s) | 381, 505, 611 |
| TspDTI | ATGAA | 1 cut(s) | 520 |
| TspGWI | ACGGA | 1 cut(s) | 461 |
| TspRI | CASTG | 2 cut(s) | 178, 307 |
| Tth111I | GACNNNGTC | 1 cut(s) | 238 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 61 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XspI | CTAG | 2 cut(s) | 251, 551 |