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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 71 |
| AccII | CGCG | 2 cut(s) | 169, 327 |
| AciI | CCGC | 5 cut(s) | 167, 261, 327, 375, 540 |
| AcoI | YGGCCR | 1 cut(s) | 478 |
| AcuI | CTGAAG | 1 cut(s) | 379 |
| AfeI | AGCGCT | 1 cut(s) | 532 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 329, 458 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| Aor51HI | AGCGCT | 1 cut(s) | 532 |
| AoxI | GGCC | 4 cut(s) | 157, 445, 478, 513 |
| ApeKI | GCWGC | 2 cut(s) | 56, 350 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 383, 415 |
| AspLEI | GCGC | 2 cut(s) | 86, 533 |
| AspS9I | GGNCC | 4 cut(s) | 63, 158, 427, 514 |
| AsuC2I | CCSGG | 4 cut(s) | 61, 151, 249, 575 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 283 |
| AvaII | GGWCC | 2 cut(s) | 63, 427 |
| BaeGI | GKGCMC | 1 cut(s) | 74 |
| BalI | TGGCCA | 1 cut(s) | 480 |
| BanI | GGYRCC | 1 cut(s) | 71 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| BbvI | GCAGC | 2 cut(s) | 43, 337 |
| BccI | CCATC | 5 cut(s) | 308, 324, 452, 461, 549 |
| BceAI | ACGGC | 1 cut(s) | 451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BcnI | CCSGG | 4 cut(s) | 61, 151, 249, 575 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BfoI | RGCGCY | 2 cut(s) | 87, 534 |
| BisI | GCNGC | 4 cut(s) | 57, 262, 351, 541 |
| BlsI | GCNGC | 4 cut(s) | 58, 263, 352, 542 |
| Bme1390I | CCNGG | 5 cut(s) | 61, 67, 151, 249, 575 |
| Bme18I | GGWCC | 2 cut(s) | 63, 427 |
| BmgT120I | GGNCC | 4 cut(s) | 63, 158, 427, 514 |
| BmiI | GGNNCC | 2 cut(s) | 6, 73 |
| BmrFI | CCNGG | 5 cut(s) | 61, 67, 151, 249, 575 |
| BmsI | GCATC | 1 cut(s) | 178 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 403, 435 |
| BpuMI | CCSGG | 4 cut(s) | 61, 151, 249, 575 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 510 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 108, 138 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 329, 458 |
| Bse1I | ACTGG | 2 cut(s) | 75, 448 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseCI | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BseDI | CCNNGG | 2 cut(s) | 66, 510 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 329, 458 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseNI | ACTGG | 2 cut(s) | 75, 448 |
| BseRI | GAGGAG | 1 cut(s) | 422 |
| BseSI | GKGCMC | 1 cut(s) | 74 |
| BseXI | GCAGC | 2 cut(s) | 43, 337 |
| BseYI | CCCAGC | 2 cut(s) | 160, 264 |
| Bsh1236I | CGCG | 2 cut(s) | 169, 327 |
| BshFI | GGCC | 4 cut(s) | 159, 447, 480, 515 |
| BshNI | GGYRCC | 1 cut(s) | 71 |
| BshVI | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BsiSI | CCGG | 4 cut(s) | 61, 150, 249, 574 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 329, 458 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| BsmI | GAATGC | 1 cut(s) | 283 |
| BsnI | GGCC | 4 cut(s) | 159, 447, 480, 515 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| Bsp143I | GATC | 2 cut(s) | 28, 304 |
| Bsp19I | CCATGG | 1 cut(s) | 510 |
| BspACI | CCGC | 5 cut(s) | 167, 261, 327, 375, 540 |
| BspANI | GGCC | 4 cut(s) | 159, 447, 480, 515 |
| BspDI | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BspFNI | CGCG | 2 cut(s) | 169, 327 |
| BspLI | GGNNCC | 2 cut(s) | 6, 73 |
| BspT107I | GGYRCC | 1 cut(s) | 71 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrI | ACTGG | 2 cut(s) | 75, 448 |
| BssECI | CCNNGG | 2 cut(s) | 66, 510 |
| BssMI | GATC | 2 cut(s) | 28, 304 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 3 cut(s) | 341, 464, 561 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 510 |
| BstFNI | CGCG | 2 cut(s) | 169, 327 |
| BstH2I | RGCGCY | 2 cut(s) | 87, 534 |
| BstHHI | GCGC | 2 cut(s) | 86, 533 |
| BstKTI | GATC | 2 cut(s) | 31, 307 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 2 cut(s) | 28, 304 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 270, 472, 537 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 5 cut(s) | 59, 65, 149, 247, 573 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstSLI | GKGCMC | 1 cut(s) | 74 |
| BstUI | CGCG | 2 cut(s) | 169, 327 |
| BstV1I | GCAGC | 2 cut(s) | 43, 337 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BsuRI | GGCC | 4 cut(s) | 159, 447, 480, 515 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 303, 456 |
| BtgI | CCRYGG | 1 cut(s) | 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 441 |
| Cac8I | GCNNGC | 3 cut(s) | 341, 464, 561 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| CfoI | GCGC | 2 cut(s) | 86, 533 |
| Cfr13I | GGNCC | 4 cut(s) | 63, 158, 427, 514 |
| ClaI | ATCGAT | 3 cut(s) | 27, 303, 456 |
| CviAII | CATG | 3 cut(s) | 199, 476, 511 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 2 cut(s) | 30, 306 |
| DpnII | GATC | 2 cut(s) | 28, 304 |
| EaeI | YGGCCR | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 1 cut(s) | 33 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco47I | GGWCC | 2 cut(s) | 63, 427 |
| Eco47III | AGCGCT | 1 cut(s) | 532 |
| Eco57I | CTGAAG | 1 cut(s) | 379 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 3 cut(s) | 202, 479, 514 |
| FaiI | YATR | 8 cut(s) | 200, 204, 471, 477, 512, 537, 547, 565 |
| FatI | CATG | 3 cut(s) | 198, 475, 510 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 262, 351, 541 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 262, 351, 541 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GlaI | GCGC | 2 cut(s) | 85, 532 |
| GluI | GCNGC | 4 cut(s) | 57, 262, 351, 541 |
| GsaI | CCCAGC | 2 cut(s) | 164, 268 |
| HaeII | RGCGCY | 2 cut(s) | 87, 534 |
| HaeIII | GGCC | 4 cut(s) | 159, 447, 480, 515 |
| HapII | CCGG | 4 cut(s) | 61, 150, 249, 574 |
| HhaI | GCGC | 2 cut(s) | 86, 533 |
| Hin1II | CATG | 3 cut(s) | 202, 479, 514 |
| Hin6I | GCGC | 2 cut(s) | 84, 531 |
| HinP1I | GCGC | 2 cut(s) | 84, 531 |
| HinfI | GANTC | 2 cut(s) | 244, 488 |
| HpaII | CCGG | 4 cut(s) | 61, 150, 249, 574 |
| HphI | GGTGA | 2 cut(s) | 104, 283 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 239, 398 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 98, 367 |
| Hpy99I | CGWCG | 1 cut(s) | 222 |
| HpyAV | CCTTC | 2 cut(s) | 137, 234 |
| HpyCH4V | TGCA | 1 cut(s) | 475 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 270, 472, 537 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92II | CATG | 3 cut(s) | 202, 479, 514 |
| HspAI | GCGC | 2 cut(s) | 84, 531 |
| Kzo9I | GATC | 2 cut(s) | 28, 304 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 337 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MalI | GATC | 2 cut(s) | 30, 306 |
| MboI | GATC | 2 cut(s) | 28, 304 |
| MboII | GAAGA | 3 cut(s) | 50, 200, 311 |
| MfeI | CAATTG | 1 cut(s) | 492 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MlsI | TGGCCA | 1 cut(s) | 480 |
| MluCI | AATT | 2 cut(s) | 482, 492 |
| MluNI | TGGCCA | 1 cut(s) | 480 |
| MlyI | GAGTC | 2 cut(s) | 238, 482 |
| MmeI | TCCRAC | 2 cut(s) | 162, 405 |
| MnlI | CCTC | 7 cut(s) | 28, 164, 245, 333, 440, 443, 458 |
| Mox20I | TGGCCA | 1 cut(s) | 480 |
| MscI | TGGCCA | 1 cut(s) | 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 1 cut(s) | 480 |
| MspA1I | CMGCKG | 1 cut(s) | 261 |
| MspI | CCGG | 4 cut(s) | 61, 150, 249, 574 |
| MspR9I | CCNGG | 5 cut(s) | 61, 67, 151, 249, 575 |
| MunI | CAATTG | 1 cut(s) | 492 |
| Mva1269I | GAATGC | 1 cut(s) | 283 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MvnI | CGCG | 2 cut(s) | 169, 327 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 270, 472, 537 |
| NciI | CCSGG | 4 cut(s) | 61, 151, 249, 575 |
| NcoI | CCATGG | 1 cut(s) | 510 |
| NdeII | GATC | 2 cut(s) | 28, 304 |
| NlaIII | CATG | 3 cut(s) | 202, 479, 514 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 73 |
| PctI | GAATGC | 1 cut(s) | 283 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PkrI | GCNGC | 4 cut(s) | 58, 263, 352, 542 |
| PleI | GAGTC | 2 cut(s) | 238, 482 |
| PpsI | GAGTC | 2 cut(s) | 238, 482 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspFI | CCCAGC | 2 cut(s) | 160, 264 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 73 |
| PspPI | GGNCC | 4 cut(s) | 63, 158, 427, 514 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SatI | GCNGC | 4 cut(s) | 57, 262, 351, 541 |
| Sau3AI | GATC | 2 cut(s) | 28, 304 |
| Sau96I | GGNCC | 4 cut(s) | 63, 158, 427, 514 |
| SchI | GAGTC | 2 cut(s) | 238, 482 |
| ScrFI | CCNGG | 5 cut(s) | 61, 67, 151, 249, 575 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SetI | ASST | 5 cut(s) | 68, 175, 289, 432, 526 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| SinI | GGWCC | 2 cut(s) | 63, 427 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| Sse9I | AATT | 2 cut(s) | 482, 492 |
| SsiI | CCGC | 5 cut(s) | 167, 261, 327, 375, 540 |
| SspMI | CTAG | 1 cut(s) | 98 |
| StyD4I | CCNGG | 5 cut(s) | 59, 65, 149, 247, 573 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaqI | TCGA | 5 cut(s) | 27, 217, 303, 456, 486 |
| TasI | AATT | 2 cut(s) | 482, 492 |
| TauI | GCSGC | 2 cut(s) | 264, 543 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseI | GCWGC | 2 cut(s) | 56, 350 |
| TspDTI | ATGAA | 1 cut(s) | 83 |
| TspRI | CASTG | 1 cut(s) | 448 |
| VpaK11BI | GGWCC | 2 cut(s) | 63, 427 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 98 |