Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2295 |
| Acc16I | TGCGCA | 1 cut(s) | 470 |
| Acc36I | ACCTGC | 1 cut(s) | 2215 |
| AccB1I | GGYRCC | 3 cut(s) | 191, 560, 1180 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 901, 1580 |
| AccBSI | CCGCTC | 1 cut(s) | 364 |
| AclWI | GGATC | 8 cut(s) | 288, 829, 842, 1049, 1112, 1473, 1886, 2009 |
| AcoI | YGGCCR | 6 cut(s) | 224, 496, 715, 888, 1582, 1608 |
| AcsI | RAATTY | 1 cut(s) | 2304 |
| AcuI | CTGAAG | 3 cut(s) | 1347, 1674, 1680 |
| AfaI | GTAC | 5 cut(s) | 682, 932, 971, 1476, 2235 |
| AfeI | AGCGCT | 2 cut(s) | 1600, 1887 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgeI | ACCGGT | 1 cut(s) | 739 |
| AgsI | TTSAA | 5 cut(s) | 101, 182, 1034, 1916, 2075 |
| AjiI | CACGTC | 1 cut(s) | 2322 |
| AjnI | CCWGG | 4 cut(s) | 624, 1080, 1343, 2210 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 831, 863 |
| Alw21I | GWGCWC | 2 cut(s) | 1516, 2335 |
| Alw26I | GTCTC | 4 cut(s) | 242, 788, 1334, 1363 |
| AlwI | GGATC | 8 cut(s) | 288, 829, 842, 1049, 1112, 1473, 1886, 2009 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1652 |
| Ama87I | CYCGRG | 1 cut(s) | 731 |
| Aor51HI | AGCGCT | 2 cut(s) | 1600, 1887 |
| ApaI | GGGCCC | 1 cut(s) | 1251 |
| ApeKI | GCWGC | 9 cut(s) | 56, 242, 368, 1874, 1985, 2114, 2147, 2153, 2156 |
| ApoI | RAATTY | 1 cut(s) | 2304 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1379, 1411 |
| AsiGI | ACCGGT | 1 cut(s) | 739 |
| AsuC2I | CCSGG | 5 cut(s) | 593, 977, 1246, 1523, 1607 |
| AsuHPI | GGTGA | 3 cut(s) | 2045, 2056, 2116 |
| AsuNHI | GCTAGC | 1 cut(s) | 1076 |
| AvaI | CYCGRG | 1 cut(s) | 731 |
| AvaII | GGWCC | 4 cut(s) | 158, 1725, 2024, 2297 |
| BaeGI | GKGCMC | 3 cut(s) | 196, 1251, 2321 |
| BalI | TGGCCA | 2 cut(s) | 226, 498 |
| BamHI | GGATCC | 1 cut(s) | 834 |
| BanI | GGYRCC | 3 cut(s) | 191, 560, 1180 |
| BanII | GRGCYC | 7 cut(s) | 486, 732, 754, 1251, 1300, 1516, 2335 |
| BauI | CACGAG | 2 cut(s) | 1509, 1943 |
| BbsI | GAAGAC | 2 cut(s) | 89, 1668 |
| Bbv12I | GWGCWC | 2 cut(s) | 1516, 2335 |
| BbvCI | CCTCAGC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 9 cut(s) | 43, 254, 355, 1886, 1972, 2126, 2134, 2140, 2143 |
| BceAI | ACGGC | 1 cut(s) | 730 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 61, 95, 1379, 1413, 1832, 1853, 1866, 1887 |
| BciT130I | CCWGG | 4 cut(s) | 626, 1082, 1345, 2212 |
| BciVI | GTATCC | 1 cut(s) | 1328 |
| BcnI | CCSGG | 5 cut(s) | 593, 977, 1246, 1523, 1607 |
| BcoDI | GTCTC | 4 cut(s) | 242, 788, 1334, 1363 |
| BfaI | CTAG | 3 cut(s) | 695, 746, 1077 |
| BfmI | CTRYAG | 1 cut(s) | 2282 |
| BfoI | RGCGCY | 4 cut(s) | 167, 552, 1602, 1889 |
| BfuAI | ACCTGC | 1 cut(s) | 2215 |
| BfuI | GTATCC | 1 cut(s) | 1328 |
| BglII | AGATCT | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 9 cut(s) | 593, 626, 977, 1082, 1246, 1345, 1523, 1607, 2212 |
| Bme18I | GGWCC | 4 cut(s) | 158, 1725, 2024, 2297 |
| BmeT110I | CYCGRG | 1 cut(s) | 731 |
| BmgBI | CACGTC | 1 cut(s) | 2322 |
| BmrFI | CCNGG | 9 cut(s) | 593, 626, 977, 1082, 1246, 1345, 1523, 1607, 2212 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 9 cut(s) | 81, 163, 480, 793, 975, 1300, 1437, 2101, 2170 |
| BmtI | GCTAGC | 1 cut(s) | 1080 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpiI | GAAGAC | 2 cut(s) | 89, 1668 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 421, 453 |
| BpmI | CTGGAG | 1 cut(s) | 1542 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1113, 2334 |
| BpuEI | CTTGAG | 2 cut(s) | 2034, 2118 |
| BpuMI | CCSGG | 5 cut(s) | 593, 977, 1246, 1523, 1607 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1021 |
| BsaI | GGTCTC | 2 cut(s) | 1334, 1363 |
| BsaJI | CCNNGG | 5 cut(s) | 528, 1605, 1611, 1741, 1804 |
| BsaWI | WCCGGW | 3 cut(s) | 739, 1951, 2101 |
| Bse118I | RCCGGY | 3 cut(s) | 608, 739, 886 |
| Bse1I | ACTGG | 5 cut(s) | 159, 466, 682, 2027, 2170 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1021 |
| BseBI | CCWGG | 4 cut(s) | 626, 1082, 1345, 2212 |
| BseCI | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BseDI | CCNNGG | 5 cut(s) | 528, 1605, 1611, 1741, 1804 |
| BseGI | GGATG | 6 cut(s) | 227, 784, 870, 985, 1758, 2281 |
| BseJI | GATNNNNATC | 1 cut(s) | 1021 |
| BseMII | CTCAG | 9 cut(s) | 1104, 1108, 1135, 1313, 1391, 1409, 1455, 1950, 2348 |
| BseNI | ACTGG | 5 cut(s) | 159, 466, 682, 2027, 2170 |
| BseRI | GAGGAG | 2 cut(s) | 1506, 2238 |
| BseSI | GKGCMC | 3 cut(s) | 196, 1251, 2321 |
| BseX3I | CGGCCG | 3 cut(s) | 715, 888, 1608 |
| BseXI | GCAGC | 9 cut(s) | 43, 254, 355, 1886, 1972, 2126, 2134, 2140, 2143 |
| BseYI | CCCAGC | 2 cut(s) | 534, 2084 |
| BsgI | GTGCAG | 3 cut(s) | 261, 640, 1893 |
| Bsh1285I | CGRYCG | 6 cut(s) | 544, 609, 718, 891, 1611, 1956 |
| BshNI | GGYRCC | 3 cut(s) | 191, 560, 1180 |
| BshTI | ACCGGT | 1 cut(s) | 739 |
| BshVI | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BsiEI | CGRYCG | 6 cut(s) | 544, 609, 718, 891, 1611, 1956 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1516, 2335 |
| BsiHKCI | CYCGRG | 1 cut(s) | 731 |
| BslFI | GGGAC | 1 cut(s) | 2101 |
| BsmAI | GTCTC | 4 cut(s) | 242, 788, 1334, 1363 |
| BsmFI | GGGAC | 1 cut(s) | 2101 |
| BsmI | GAATGC | 3 cut(s) | 90, 301, 1853 |
| Bso31I | GGTCTC | 2 cut(s) | 1334, 1363 |
| BsoBI | CYCGRG | 1 cut(s) | 731 |
| Bsp120I | GGGCCC | 1 cut(s) | 1247 |
| Bsp1286I | GDGCHC | 9 cut(s) | 196, 486, 732, 754, 1251, 1300, 1516, 2321, 2335 |
| Bsp19I | CCATGG | 2 cut(s) | 528, 1741 |
| Bsp68I | TCGCGA | 1 cut(s) | 1548 |
| BspCNI | CTCAG | 9 cut(s) | 1105, 1107, 1134, 1312, 1390, 1410, 1456, 1951, 2347 |
| BspDI | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BspMI | ACCTGC | 1 cut(s) | 2215 |
| BspOI | GCTAGC | 1 cut(s) | 1080 |
| BspPI | GGATC | 8 cut(s) | 288, 829, 842, 1049, 1112, 1473, 1886, 2009 |
| BspQI | GCTCTTC | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 3 cut(s) | 191, 560, 1180 |
| BspTNI | GGTCTC | 2 cut(s) | 1334, 1363 |
| BsrBI | CCGCTC | 1 cut(s) | 364 |
| BsrFI | RCCGGY | 3 cut(s) | 608, 739, 886 |
| BsrI | ACTGG | 5 cut(s) | 159, 466, 682, 2027, 2170 |
| BssAI | RCCGGY | 3 cut(s) | 608, 739, 886 |
| BssECI | CCNNGG | 5 cut(s) | 528, 1605, 1611, 1741, 1804 |
| BssSI | CACGAG | 2 cut(s) | 1509, 1943 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 1741 |
| Bst2BI | CACGAG | 2 cut(s) | 1509, 1943 |
| Bst2UI | CCWGG | 4 cut(s) | 626, 1082, 1345, 2212 |
| Bst4CI | ACNGT | 3 cut(s) | 191, 542, 1969 |
| Bst6I | CTCTTC | 7 cut(s) | 33, 667, 1347, 1412, 1494, 1672, 1742 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 742, 1696 |
| BstDEI | CTNAG | 9 cut(s) | 1094, 1113, 1121, 1299, 1377, 1418, 1464, 1959, 2334 |
| BstDSI | CCRYGG | 4 cut(s) | 528, 1611, 1741, 1804 |
| BstF5I | GGATG | 6 cut(s) | 227, 784, 870, 985, 1758, 2281 |
| BstH2I | RGCGCY | 4 cut(s) | 167, 552, 1602, 1889 |
| BstMAI | GTCTC | 4 cut(s) | 242, 788, 1334, 1363 |
| BstMCI | CGRYCG | 6 cut(s) | 544, 609, 718, 891, 1611, 1956 |
| BstNI | CCWGG | 4 cut(s) | 626, 1082, 1345, 2212 |
| BstNSI | RCATGY | 2 cut(s) | 328, 766 |
| BstSCI | CCNGG | 9 cut(s) | 591, 624, 975, 1080, 1244, 1343, 1521, 1605, 2210 |
| BstSFI | CTRYAG | 1 cut(s) | 2282 |
| BstSLI | GKGCMC | 3 cut(s) | 196, 1251, 2321 |
| BstV1I | GCAGC | 9 cut(s) | 43, 254, 355, 1886, 1972, 2126, 2134, 2140, 2143 |
| BstV2I | GAAGAC | 2 cut(s) | 89, 1668 |
| BstX2I | RGATCY | 3 cut(s) | 280, 416, 834 |
| BstYI | RGATCY | 3 cut(s) | 280, 416, 834 |
| BstZI | CGGCCG | 3 cut(s) | 715, 888, 1608 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BsuI | GTATCC | 1 cut(s) | 1328 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| BtgI | CCRYGG | 4 cut(s) | 528, 1611, 1741, 1804 |
| BtgZI | GCGATG | 2 cut(s) | 879, 1861 |
| BtrI | CACGTC | 1 cut(s) | 2322 |
| BtsCI | GGATG | 6 cut(s) | 227, 784, 870, 985, 1758, 2281 |
| BtsIMutI | CAGTG | 2 cut(s) | 675, 2163 |
| BtuMI | TCGCGA | 1 cut(s) | 1548 |
| BveI | ACCTGC | 1 cut(s) | 2215 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1652 |
| Cfr10I | RCCGGY | 3 cut(s) | 608, 739, 886 |
| Cfr42I | CCGCGG | 1 cut(s) | 1614 |
| ClaI | ATCGAT | 3 cut(s) | 27, 474, 1308 |
| CseI | GACGC | 1 cut(s) | 1208 |
| CsiI | ACCWGGT | 1 cut(s) | 1343 |
| Csp6I | GTAC | 5 cut(s) | 681, 931, 970, 1475, 2234 |
| CspAI | ACCGGT | 1 cut(s) | 739 |
| CviAII | CATG | 7 cut(s) | 325, 494, 529, 763, 1742, 2066, 2186 |
| CviQI | GTAC | 5 cut(s) | 681, 931, 970, 1475, 2234 |
| DdeI | CTNAG | 9 cut(s) | 1094, 1113, 1121, 1299, 1377, 1418, 1464, 1959, 2334 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2295 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2295 |
| EaeI | YGGCCR | 6 cut(s) | 224, 496, 715, 888, 1582, 1608 |
| EagI | CGGCCG | 3 cut(s) | 715, 888, 1608 |
| Eam1104I | CTCTTC | 7 cut(s) | 33, 667, 1347, 1412, 1494, 1672, 1742 |
| EarI | CTCTTC | 7 cut(s) | 33, 667, 1347, 1412, 1494, 1672, 1742 |
| EciI | GGCGGA | 2 cut(s) | 627, 848 |
| Ecl136II | GAGCTC | 2 cut(s) | 1514, 2333 |
| EclXI | CGGCCG | 3 cut(s) | 715, 888, 1608 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 1741 |
| Eco24I | GRGCYC | 7 cut(s) | 486, 732, 754, 1251, 1300, 1516, 2335 |
| Eco31I | GGTCTC | 2 cut(s) | 1334, 1363 |
| Eco32I | GATATC | 1 cut(s) | 448 |
| Eco47I | GGWCC | 4 cut(s) | 158, 1725, 2024, 2297 |
| Eco47III | AGCGCT | 2 cut(s) | 1600, 1887 |
| Eco52I | CGGCCG | 3 cut(s) | 715, 888, 1608 |
| Eco53kI | GAGCTC | 2 cut(s) | 1514, 2333 |
| Eco57I | CTGAAG | 3 cut(s) | 1347, 1674, 1680 |
| Eco88I | CYCGRG | 1 cut(s) | 731 |
| EcoICRI | GAGCTC | 2 cut(s) | 1514, 2333 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1236, 2002, 2297 |
| EcoRII | CCWGG | 4 cut(s) | 624, 1080, 1343, 2210 |
| EcoRV | GATATC | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 1741 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| EcoT38I | GRGCYC | 7 cut(s) | 486, 732, 754, 1251, 1300, 1516, 2335 |
| ErhI | CCWWGG | 2 cut(s) | 528, 1741 |
| FaeI | CATG | 7 cut(s) | 328, 497, 532, 766, 1745, 2069, 2189 |
| FaqI | GGGAC | 1 cut(s) | 2101 |
| FatI | CATG | 7 cut(s) | 324, 493, 528, 762, 1741, 2065, 2185 |
| FauI | CCCGC | 4 cut(s) | 264, 270, 882, 1606 |
| FokI | GGATG | 6 cut(s) | 214, 771, 857, 992, 1765, 2288 |
| FriOI | GRGCYC | 7 cut(s) | 486, 732, 754, 1251, 1300, 1516, 2335 |
| FspBI | CTAG | 3 cut(s) | 695, 746, 1077 |
| FspI | TGCGCA | 1 cut(s) | 470 |
| GsaI | CCCAGC | 2 cut(s) | 538, 2088 |
| GsuI | CTGGAG | 1 cut(s) | 1542 |
| HaeII | RGCGCY | 4 cut(s) | 167, 552, 1602, 1889 |
| HgaI | GACGC | 1 cut(s) | 1208 |
| Hin1II | CATG | 7 cut(s) | 328, 497, 532, 766, 1745, 2069, 2189 |
| HincII | GTYRAC | 1 cut(s) | 514 |
| HindII | GTYRAC | 1 cut(s) | 514 |
| HphI | GGTGA | 3 cut(s) | 2045, 2056, 2116 |
| Hpy166II | GTNNAC | 1 cut(s) | 514 |
| Hpy188I | TCNGA | 8 cut(s) | 952, 1069, 1097, 1302, 1412, 1465, 1675, 1725 |
| Hpy8I | GTNNAC | 1 cut(s) | 514 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 728, 1391 |
| HpyAV | CCTTC | 3 cut(s) | 921, 1251, 1325 |
| HpyCH4III | ACNGT | 3 cut(s) | 191, 542, 1969 |
| HpyCH4IV | ACGT | 2 cut(s) | 723, 2321 |
| HpyF3I | CTNAG | 9 cut(s) | 1094, 1113, 1121, 1299, 1377, 1418, 1464, 1959, 2334 |
| HpySE526I | ACGT | 2 cut(s) | 723, 2321 |
| Hsp92II | CATG | 7 cut(s) | 328, 497, 532, 766, 1745, 2069, 2189 |
| KspI | CCGCGG | 1 cut(s) | 1614 |
| LguI | GCTCTTC | 1 cut(s) | 33 |
| LmnI | GCTCC | 7 cut(s) | 10, 749, 1519, 2065, 2081, 2104, 2251 |
| Lsp1109I | GCAGC | 9 cut(s) | 43, 254, 355, 1886, 1972, 2126, 2134, 2140, 2143 |
| LweI | GCATC | 9 cut(s) | 81, 163, 480, 793, 975, 1300, 1437, 2101, 2170 |
| MabI | ACCWGGT | 1 cut(s) | 1343 |
| MaeI | CTAG | 3 cut(s) | 695, 746, 1077 |
| MaeII | ACGT | 2 cut(s) | 723, 2321 |
| MaeIII | GTNAC | 1 cut(s) | 2044 |
| MbiI | CCGCTC | 1 cut(s) | 364 |
| MfeI | CAATTG | 1 cut(s) | 1175 |
| MflI | RGATCY | 3 cut(s) | 280, 416, 834 |
| MhlI | GDGCHC | 9 cut(s) | 196, 486, 732, 754, 1251, 1300, 1516, 2321, 2335 |
| MlsI | TGGCCA | 2 cut(s) | 226, 498 |
| MluCI | AATT | 8 cut(s) | 220, 500, 1002, 1175, 1366, 1542, 1935, 2304 |
| MluNI | TGGCCA | 2 cut(s) | 226, 498 |
| MlyI | GAGTC | 5 cut(s) | 682, 1369, 1463, 1658, 2041 |
| MmeI | TCCRAC | 2 cut(s) | 162, 423 |
| Mox20I | TGGCCA | 2 cut(s) | 226, 498 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MscI | TGGCCA | 2 cut(s) | 226, 498 |
| MseI | TTAA | 1 cut(s) | 1365 |
| Msp20I | TGGCCA | 2 cut(s) | 226, 498 |
| MspA1I | CMGCKG | 2 cut(s) | 1112, 1613 |
| MspR9I | CCNGG | 9 cut(s) | 593, 626, 977, 1082, 1246, 1345, 1523, 1607, 2212 |
| MunI | CAATTG | 1 cut(s) | 1175 |
| Mva1269I | GAATGC | 3 cut(s) | 90, 301, 1853 |
| MvaI | CCWGG | 4 cut(s) | 626, 1082, 1345, 2212 |
| NciI | CCSGG | 5 cut(s) | 593, 977, 1246, 1523, 1607 |
| NcoI | CCATGG | 2 cut(s) | 528, 1741 |
| NheI | GCTAGC | 1 cut(s) | 1076 |
| NlaIII | CATG | 7 cut(s) | 328, 497, 532, 766, 1745, 2069, 2189 |
| NmuCI | GTSAC | 1 cut(s) | 2044 |
| NruI | TCGCGA | 1 cut(s) | 1548 |
| NsbI | TGCGCA | 1 cut(s) | 470 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| NspI | RCATGY | 2 cut(s) | 328, 766 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PciSI | GCTCTTC | 1 cut(s) | 33 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 720, 1545 |
| PctI | GAATGC | 3 cut(s) | 90, 301, 1853 |
| PfeI | GAWTC | 6 cut(s) | 506, 615, 1017, 1098, 1809, 1865 |
| PflFI | GACNNNGTC | 1 cut(s) | 156 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 901, 1580 |
| PfoI | TCCNGGA | 2 cut(s) | 624, 975 |
| PinAI | ACCGGT | 1 cut(s) | 739 |
| PleI | GAGTC | 5 cut(s) | 682, 1369, 1463, 1658, 2041 |
| PpsI | GAGTC | 5 cut(s) | 682, 1369, 1463, 1658, 2041 |
| PpuMI | RGGWCCY | 1 cut(s) | 2297 |
| PscI | ACATGT | 1 cut(s) | 324 |
| Psp124BI | GAGCTC | 2 cut(s) | 1516, 2335 |
| Psp5II | RGGWCCY | 1 cut(s) | 2297 |
| Psp6I | CCWGG | 4 cut(s) | 624, 1080, 1343, 2210 |
| PspFI | CCCAGC | 2 cut(s) | 534, 2084 |
| PspGI | CCWGG | 4 cut(s) | 624, 1080, 1343, 2210 |
| PspOMI | GGGCCC | 1 cut(s) | 1247 |
| PspPPI | RGGWCCY | 1 cut(s) | 2297 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1652 |
| PsuI | RGATCY | 3 cut(s) | 280, 416, 834 |
| PsyI | GACNNNGTC | 1 cut(s) | 156 |
| RruI | TCGCGA | 1 cut(s) | 1548 |
| RsaI | GTAC | 5 cut(s) | 682, 932, 971, 1476, 2235 |
| RsaNI | GTAC | 5 cut(s) | 681, 931, 970, 1475, 2234 |
| SacI | GAGCTC | 2 cut(s) | 1516, 2335 |
| SacII | CCGCGG | 1 cut(s) | 1614 |
| SapI | GCTCTTC | 1 cut(s) | 33 |
| SaqAI | TTAA | 1 cut(s) | 1365 |
| SchI | GAGTC | 5 cut(s) | 682, 1369, 1463, 1658, 2041 |
| ScrFI | CCNGG | 9 cut(s) | 593, 626, 977, 1082, 1246, 1345, 1523, 1607, 2212 |
| SduI | GDGCHC | 9 cut(s) | 196, 486, 732, 754, 1251, 1300, 1516, 2321, 2335 |
| SexAI | ACCWGGT | 1 cut(s) | 1343 |
| SfaNI | GCATC | 9 cut(s) | 81, 163, 480, 793, 975, 1300, 1437, 2101, 2170 |
| SfcI | CTRYAG | 1 cut(s) | 2282 |
| Sfr303I | CCGCGG | 1 cut(s) | 1614 |
| SgrBI | CCGCGG | 1 cut(s) | 1614 |
| SinI | GGWCC | 4 cut(s) | 158, 1725, 2024, 2297 |
| SmlI | CTYRAG | 2 cut(s) | 2049, 2133 |
| SmoI | CTYRAG | 2 cut(s) | 2049, 2133 |
| Sse9I | AATT | 8 cut(s) | 220, 500, 1002, 1175, 1366, 1542, 1935, 2304 |
| SspI | AATATT | 2 cut(s) | 632, 2342 |
| SspMI | CTAG | 3 cut(s) | 695, 746, 1077 |
| SstI | GAGCTC | 2 cut(s) | 1516, 2335 |
| StyD4I | CCNGG | 9 cut(s) | 591, 624, 975, 1080, 1244, 1343, 1521, 1605, 2210 |
| StyI | CCWWGG | 2 cut(s) | 528, 1741 |
| TaaI | ACNGT | 3 cut(s) | 191, 542, 1969 |
| TaiI | ACGT | 2 cut(s) | 726, 2324 |
| TaqII | GACCGA | 1 cut(s) | 1784 |
| TasI | AATT | 8 cut(s) | 220, 500, 1002, 1175, 1366, 1542, 1935, 2304 |
| TfiI | GAWTC | 6 cut(s) | 506, 615, 1017, 1098, 1809, 1865 |
| Tru1I | TTAA | 1 cut(s) | 1365 |
| Tru9I | TTAA | 1 cut(s) | 1365 |
| TscAI | CASTG | 2 cut(s) | 682, 2170 |
| TseFI | GTSAC | 1 cut(s) | 2044 |
| TseI | GCWGC | 9 cut(s) | 56, 242, 368, 1874, 1985, 2114, 2147, 2153, 2156 |
| Tsp45I | GTSAC | 1 cut(s) | 2044 |
| TspDTI | ATGAA | 3 cut(s) | 637, 1769, 2280 |
| TspGWI | ACGGA | 2 cut(s) | 1351, 1821 |
| TspRI | CASTG | 2 cut(s) | 682, 2170 |
| Tth111I | GACNNNGTC | 1 cut(s) | 156 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 901, 1580 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 1725, 2024, 2297 |
| XapI | RAATTY | 1 cut(s) | 2304 |
| XceI | RCATGY | 2 cut(s) | 328, 766 |
| XspI | CTAG | 3 cut(s) | 695, 746, 1077 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |