Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 467 |
| AccII | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| AciI | CCGC | 8 cut(s) | 17, 59, 63, 87, 287, 289, 436, 478 |
| AclWI | GGATC | 2 cut(s) | 532, 545 |
| AcoI | YGGCCR | 3 cut(s) | 139, 214, 433 |
| AcyI | GRCGYC | 1 cut(s) | 468 |
| AfaI | GTAC | 1 cut(s) | 350 |
| AfeI | AGCGCT | 1 cut(s) | 268 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 65, 194, 288 |
| AgeI | ACCGGT | 1 cut(s) | 257 |
| AjnI | CCWGG | 1 cut(s) | 489 |
| AluBI | AGCT | 1 cut(s) | 279 |
| AluI | AGCT | 1 cut(s) | 279 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw26I | GTCTC | 1 cut(s) | 506 |
| AlwI | GGATC | 2 cut(s) | 532, 545 |
| Aor51HI | AGCGCT | 1 cut(s) | 268 |
| AoxI | GGCC | 8 cut(s) | 139, 214, 249, 297, 420, 433, 492, 526 |
| ApeKI | GCWGC | 2 cut(s) | 264, 438 |
| AsiGI | ACCGGT | 1 cut(s) | 257 |
| AspLEI | GCGC | 3 cut(s) | 63, 269, 470 |
| AspS9I | GGNCC | 3 cut(s) | 250, 421, 527 |
| AsuHPI | GGTGA | 3 cut(s) | 69, 145, 163 |
| BalI | TGGCCA | 2 cut(s) | 141, 216 |
| BamHI | GGATCC | 1 cut(s) | 537 |
| BanI | GGYRCC | 1 cut(s) | 467 |
| BanII | GRGCYC | 1 cut(s) | 204 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvI | GCAGC | 2 cut(s) | 276, 425 |
| BccI | CCATC | 3 cut(s) | 182, 188, 401 |
| BceAI | ACGGC | 2 cut(s) | 435, 448 |
| BciT130I | CCWGG | 1 cut(s) | 491 |
| BcoDI | GTCTC | 1 cut(s) | 506 |
| BfaI | CTAG | 3 cut(s) | 344, 516, 550 |
| BfoI | RGCGCY | 2 cut(s) | 270, 471 |
| BisI | GCNGC | 5 cut(s) | 18, 87, 265, 436, 439 |
| BlsI | GCNGC | 5 cut(s) | 19, 88, 266, 437, 440 |
| BmcAI | AGTACT | 1 cut(s) | 350 |
| Bme1390I | CCNGG | 1 cut(s) | 491 |
| BmgT120I | GGNCC | 3 cut(s) | 250, 421, 527 |
| BmiI | GGNNCC | 2 cut(s) | 469, 539 |
| BmrFI | CCNGG | 1 cut(s) | 491 |
| BmsI | GCATC | 2 cut(s) | 159, 511 |
| BsaHI | GRCGYC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 3 cut(s) | 246, 287, 401 |
| BsaWI | WCCGGW | 1 cut(s) | 257 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 65, 194, 288 |
| Bse118I | RCCGGY | 1 cut(s) | 257 |
| Bse1I | ACTGG | 2 cut(s) | 184, 356 |
| Bse3DI | GCAATG | 1 cut(s) | 318 |
| BseBI | CCWGG | 1 cut(s) | 491 |
| BseDI | CCNNGG | 3 cut(s) | 246, 287, 401 |
| BseGI | GGATG | 1 cut(s) | 502 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 65, 194, 288 |
| BseMI | GCAATG | 1 cut(s) | 318 |
| BseNI | ACTGG | 2 cut(s) | 184, 356 |
| BseX3I | CGGCCG | 1 cut(s) | 433 |
| BseXI | GCAGC | 2 cut(s) | 276, 425 |
| BsgI | GTGCAG | 1 cut(s) | 358 |
| Bsh1236I | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| Bsh1285I | CGRYCG | 2 cut(s) | 262, 436 |
| BshFI | GGCC | 8 cut(s) | 141, 216, 251, 299, 422, 435, 494, 528 |
| BshNI | GGYRCC | 1 cut(s) | 467 |
| BshTI | ACCGGT | 1 cut(s) | 257 |
| BsiEI | CGRYCG | 2 cut(s) | 262, 436 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BsiSI | CCGG | 2 cut(s) | 258, 525 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 65, 194, 288 |
| BsmAI | GTCTC | 1 cut(s) | 506 |
| BsnI | GGCC | 8 cut(s) | 141, 216, 251, 299, 422, 435, 494, 528 |
| Bsp1286I | GDGCHC | 2 cut(s) | 204, 318 |
| Bsp143I | GATC | 1 cut(s) | 537 |
| Bsp19I | CCATGG | 1 cut(s) | 246 |
| BspACI | CCGC | 8 cut(s) | 17, 59, 63, 87, 287, 289, 436, 478 |
| BspANI | GGCC | 8 cut(s) | 141, 216, 251, 299, 422, 435, 494, 528 |
| BspFNI | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| BspLI | GGNNCC | 2 cut(s) | 469, 539 |
| BspPI | GGATC | 2 cut(s) | 532, 545 |
| BspT107I | GGYRCC | 1 cut(s) | 467 |
| BsrDI | GCAATG | 1 cut(s) | 318 |
| BsrFI | RCCGGY | 1 cut(s) | 257 |
| BsrI | ACTGG | 2 cut(s) | 184, 356 |
| BssAI | RCCGGY | 1 cut(s) | 257 |
| BssECI | CCNNGG | 3 cut(s) | 246, 287, 401 |
| BssMI | GATC | 1 cut(s) | 537 |
| BssNI | GRCGYC | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 2 cut(s) | 246, 401 |
| Bst2UI | CCWGG | 1 cut(s) | 491 |
| BstACI | GRCGYC | 1 cut(s) | 468 |
| BstC8I | GCNNGC | 3 cut(s) | 7, 200, 297 |
| BstDSI | CCRYGG | 2 cut(s) | 246, 287 |
| BstF5I | GGATG | 1 cut(s) | 502 |
| BstFNI | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| BstH2I | RGCGCY | 2 cut(s) | 270, 471 |
| BstHHI | GCGC | 3 cut(s) | 63, 269, 470 |
| BstKTI | GATC | 1 cut(s) | 540 |
| BstMAI | GTCTC | 1 cut(s) | 506 |
| BstMBI | GATC | 1 cut(s) | 537 |
| BstMCI | CGRYCG | 2 cut(s) | 262, 436 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 60, 147, 465, 525 |
| BstNI | CCWGG | 1 cut(s) | 491 |
| BstNSI | RCATGY | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 489 |
| BstUI | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| BstV1I | GCAGC | 2 cut(s) | 276, 425 |
| BstX2I | RGATCY | 1 cut(s) | 537 |
| BstYI | RGATCY | 1 cut(s) | 537 |
| BstZI | CGGCCG | 1 cut(s) | 433 |
| BsuRI | GGCC | 8 cut(s) | 141, 216, 251, 299, 422, 435, 494, 528 |
| BtgI | CCRYGG | 2 cut(s) | 246, 287 |
| BtsCI | GGATG | 1 cut(s) | 502 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cac8I | GCNNGC | 3 cut(s) | 7, 200, 297 |
| CfoI | GCGC | 3 cut(s) | 63, 269, 470 |
| Cfr10I | RCCGGY | 1 cut(s) | 257 |
| Cfr13I | GGNCC | 3 cut(s) | 250, 421, 527 |
| Cfr42I | CCGCGG | 1 cut(s) | 290 |
| Csp6I | GTAC | 1 cut(s) | 349 |
| CspAI | ACCGGT | 1 cut(s) | 257 |
| CviAII | CATG | 4 cut(s) | 212, 247, 460, 499 |
| CviQI | GTAC | 1 cut(s) | 349 |
| DinI | GGCGCC | 1 cut(s) | 469 |
| DpnI | GATC | 1 cut(s) | 539 |
| DpnII | GATC | 1 cut(s) | 537 |
| EaeI | YGGCCR | 3 cut(s) | 139, 214, 433 |
| EagI | CGGCCG | 1 cut(s) | 433 |
| EclXI | CGGCCG | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 2 cut(s) | 246, 401 |
| Eco24I | GRGCYC | 1 cut(s) | 204 |
| Eco32I | GATATC | 1 cut(s) | 166 |
| Eco47III | AGCGCT | 1 cut(s) | 268 |
| Eco52I | CGGCCG | 1 cut(s) | 433 |
| EcoRII | CCWGG | 1 cut(s) | 489 |
| EcoRV | GATATC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 2 cut(s) | 246, 401 |
| EcoT22I | ATGCAT | 1 cut(s) | 504 |
| EcoT38I | GRGCYC | 1 cut(s) | 204 |
| EgeI | GGCGCC | 1 cut(s) | 469 |
| EheI | GGCGCC | 1 cut(s) | 469 |
| ErhI | CCWWGG | 2 cut(s) | 246, 401 |
| FaeI | CATG | 4 cut(s) | 215, 250, 463, 502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 353, 385 |
| FatI | CATG | 4 cut(s) | 211, 246, 459, 498 |
| FauI | CCCGC | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 5 cut(s) | 18, 87, 265, 436, 439 |
| FokI | GGATG | 1 cut(s) | 489 |
| FriOI | GRGCYC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 5 cut(s) | 18, 87, 265, 436, 439 |
| FspBI | CTAG | 3 cut(s) | 344, 516, 550 |
| GlaI | GCGC | 3 cut(s) | 62, 268, 469 |
| GluI | GCNGC | 5 cut(s) | 18, 87, 265, 436, 439 |
| HaeII | RGCGCY | 2 cut(s) | 270, 471 |
| HaeIII | GGCC | 8 cut(s) | 141, 216, 251, 299, 422, 435, 494, 528 |
| HapII | CCGG | 2 cut(s) | 258, 525 |
| HhaI | GCGC | 3 cut(s) | 63, 269, 470 |
| Hin1I | GRCGYC | 1 cut(s) | 468 |
| Hin1II | CATG | 4 cut(s) | 215, 250, 463, 502 |
| Hin6I | GCGC | 3 cut(s) | 61, 267, 468 |
| HinP1I | GCGC | 3 cut(s) | 61, 267, 468 |
| HinfI | GANTC | 2 cut(s) | 224, 447 |
| HpaII | CCGG | 2 cut(s) | 258, 525 |
| HphI | GGTGA | 3 cut(s) | 69, 145, 163 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 452 |
| Hpy188III | TCNNGA | 1 cut(s) | 344 |
| HpyAV | CCTTC | 2 cut(s) | 133, 249 |
| HpyCH4V | TGCA | 3 cut(s) | 360, 375, 502 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 60, 147, 465, 525 |
| Hsp92I | GRCGYC | 1 cut(s) | 468 |
| Hsp92II | CATG | 4 cut(s) | 215, 250, 463, 502 |
| HspAI | GCGC | 3 cut(s) | 61, 267, 468 |
| KasI | GGCGCC | 1 cut(s) | 467 |
| KspI | CCGCGG | 1 cut(s) | 290 |
| Kzo9I | GATC | 1 cut(s) | 537 |
| LmnI | GCTCC | 1 cut(s) | 284 |
| Lsp1109I | GCAGC | 2 cut(s) | 276, 425 |
| LweI | GCATC | 2 cut(s) | 159, 511 |
| MaeI | CTAG | 3 cut(s) | 344, 516, 550 |
| MalI | GATC | 1 cut(s) | 539 |
| MboI | GATC | 1 cut(s) | 537 |
| MboII | GAAGA | 1 cut(s) | 361 |
| MflI | RGATCY | 1 cut(s) | 537 |
| MhlI | GDGCHC | 2 cut(s) | 204, 318 |
| MlsI | TGGCCA | 2 cut(s) | 141, 216 |
| MluCI | AATT | 1 cut(s) | 218 |
| MluNI | TGGCCA | 2 cut(s) | 141, 216 |
| Mly113I | GGCGCC | 1 cut(s) | 468 |
| MlyI | GAGTC | 2 cut(s) | 218, 441 |
| MnlI | CCTC | 5 cut(s) | 65, 179, 434, 482, 551 |
| Mox20I | TGGCCA | 2 cut(s) | 141, 216 |
| Mph1103I | ATGCAT | 1 cut(s) | 504 |
| MscI | TGGCCA | 2 cut(s) | 141, 216 |
| Msp20I | TGGCCA | 2 cut(s) | 141, 216 |
| MspA1I | CMGCKG | 2 cut(s) | 289, 438 |
| MspI | CCGG | 2 cut(s) | 258, 525 |
| MspR9I | CCNGG | 1 cut(s) | 491 |
| MvaI | CCWGG | 1 cut(s) | 491 |
| MvnI | CGCG | 4 cut(s) | 17, 61, 63, 289 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 60, 147, 465, 525 |
| NarI | GGCGCC | 1 cut(s) | 468 |
| NcoI | CCATGG | 1 cut(s) | 246 |
| NdeII | GATC | 1 cut(s) | 537 |
| NlaIII | CATG | 4 cut(s) | 215, 250, 463, 502 |
| NlaIV | GGNNCC | 2 cut(s) | 469, 539 |
| NsiI | ATGCAT | 1 cut(s) | 504 |
| NspI | RCATGY | 1 cut(s) | 463 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 438 |
| PinAI | ACCGGT | 1 cut(s) | 257 |
| PkrI | GCNGC | 5 cut(s) | 19, 88, 266, 437, 440 |
| PleI | GAGTC | 2 cut(s) | 218, 441 |
| PluTI | GGCGCC | 1 cut(s) | 471 |
| PpsI | GAGTC | 2 cut(s) | 218, 441 |
| Psp6I | CCWGG | 1 cut(s) | 489 |
| PspGI | CCWGG | 1 cut(s) | 489 |
| PspN4I | GGNNCC | 2 cut(s) | 469, 539 |
| PspPI | GGNCC | 3 cut(s) | 250, 421, 527 |
| PsuI | RGATCY | 1 cut(s) | 537 |
| RsaI | GTAC | 1 cut(s) | 350 |
| RsaNI | GTAC | 1 cut(s) | 349 |
| SacII | CCGCGG | 1 cut(s) | 290 |
| SatI | GCNGC | 5 cut(s) | 18, 87, 265, 436, 439 |
| Sau3AI | GATC | 1 cut(s) | 537 |
| Sau96I | GGNCC | 3 cut(s) | 250, 421, 527 |
| ScaI | AGTACT | 1 cut(s) | 350 |
| SchI | GAGTC | 2 cut(s) | 218, 441 |
| ScrFI | CCNGG | 1 cut(s) | 491 |
| SduI | GDGCHC | 2 cut(s) | 204, 318 |
| SetI | ASST | 5 cut(s) | 32, 125, 281, 331, 380 |
| SfaNI | GCATC | 2 cut(s) | 159, 511 |
| SfoI | GGCGCC | 1 cut(s) | 469 |
| Sfr303I | CCGCGG | 1 cut(s) | 290 |
| SgrBI | CCGCGG | 1 cut(s) | 290 |
| Sse9I | AATT | 1 cut(s) | 218 |
| SsiI | CCGC | 8 cut(s) | 17, 59, 63, 87, 287, 289, 436, 478 |
| SspDI | GGCGCC | 1 cut(s) | 467 |
| SspMI | CTAG | 3 cut(s) | 344, 516, 550 |
| StyD4I | CCNGG | 1 cut(s) | 489 |
| StyI | CCWWGG | 2 cut(s) | 246, 401 |
| TaqI | TCGA | 2 cut(s) | 126, 543 |
| TasI | AATT | 1 cut(s) | 218 |
| TatI | WGTACW | 1 cut(s) | 348 |
| TauI | GCSGC | 3 cut(s) | 20, 89, 438 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseI | GCWGC | 2 cut(s) | 264, 438 |
| TspDTI | ATGAA | 1 cut(s) | 355 |
| TspRI | CASTG | 1 cut(s) | 184 |
| XbaI | TCTAGA | 1 cut(s) | 343 |
| XceI | RCATGY | 1 cut(s) | 463 |
| XspI | CTAG | 3 cut(s) | 344, 516, 550 |
| ZrmI | AGTACT | 1 cut(s) | 350 |
| Zsp2I | ATGCAT | 1 cut(s) | 504 |