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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 253 |
| AccII | CGCG | 3 cut(s) | 38, 174, 265 |
| AccIII | TCCGGA | 1 cut(s) | 65 |
| AciI | CCGC | 5 cut(s) | 4, 19, 234, 253, 263 |
| AcoI | YGGCCR | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 355 |
| AgsI | TTSAA | 2 cut(s) | 10, 98 |
| AleI | CACNNNNGTG | 1 cut(s) | 292 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 329 |
| Alw26I | GTCTC | 1 cut(s) | 233 |
| Aor13HI | TCCGGA | 1 cut(s) | 65 |
| AoxI | GGCC | 4 cut(s) | 254, 260, 269, 296 |
| AspLEI | GCGC | 2 cut(s) | 134, 267 |
| AspS9I | GGNCC | 1 cut(s) | 387 |
| AsuC2I | CCSGG | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 178 |
| AvaII | GGWCC | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 1 cut(s) | 287 |
| BanII | GRGCYC | 1 cut(s) | 148 |
| BauI | CACGAG | 1 cut(s) | 322 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 329 |
| BccI | CCATC | 2 cut(s) | 83, 191 |
| BcnI | CCSGG | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 233 |
| BfaI | CTAG | 1 cut(s) | 149 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 268 |
| BglII | AGATCT | 1 cut(s) | 400 |
| BisI | GCNGC | 2 cut(s) | 254, 263 |
| BlsI | GCNGC | 2 cut(s) | 255, 264 |
| Bme1390I | CCNGG | 1 cut(s) | 85 |
| Bme18I | GGWCC | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 1 cut(s) | 387 |
| BmiI | GGNNCC | 1 cut(s) | 389 |
| BmrFI | CCNGG | 1 cut(s) | 85 |
| BmsI | GCATC | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 382 |
| BpuMI | CCSGG | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 3 cut(s) | 84, 189, 257 |
| BsaWI | WCCGGW | 2 cut(s) | 65, 384 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 355 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| BseAI | TCCGGA | 1 cut(s) | 65 |
| BseDI | CCNNGG | 3 cut(s) | 84, 189, 257 |
| BseGI | GGATG | 2 cut(s) | 94, 134 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 355 |
| BseRI | GAGGAG | 2 cut(s) | 52, 308 |
| BseSI | GKGCMC | 1 cut(s) | 287 |
| BseX3I | CGGCCG | 1 cut(s) | 254 |
| Bsh1236I | CGCG | 3 cut(s) | 38, 174, 265 |
| Bsh1285I | CGRYCG | 1 cut(s) | 257 |
| BshFI | GGCC | 4 cut(s) | 256, 262, 271, 298 |
| BsiEI | CGRYCG | 1 cut(s) | 257 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 329 |
| BsiSI | CCGG | 5 cut(s) | 66, 84, 129, 237, 385 |
| BslFI | GGGAC | 3 cut(s) | 96, 371, 373 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 355 |
| BsmAI | GTCTC | 1 cut(s) | 233 |
| BsmFI | GGGAC | 3 cut(s) | 96, 371, 373 |
| BsnI | GGCC | 4 cut(s) | 256, 262, 271, 298 |
| Bsp1286I | GDGCHC | 4 cut(s) | 148, 180, 287, 329 |
| Bsp13I | TCCGGA | 1 cut(s) | 65 |
| Bsp143I | GATC | 1 cut(s) | 400 |
| Bsp68I | TCGCGA | 2 cut(s) | 38, 174 |
| BspACI | CCGC | 5 cut(s) | 4, 19, 234, 253, 263 |
| BspANI | GGCC | 4 cut(s) | 256, 262, 271, 298 |
| BspEI | TCCGGA | 1 cut(s) | 65 |
| BspFNI | CGCG | 3 cut(s) | 38, 174, 265 |
| BspLI | GGNNCC | 1 cut(s) | 389 |
| BspQI | GCTCTTC | 1 cut(s) | 334 |
| BsrBI | CCGCTC | 1 cut(s) | 253 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 3 cut(s) | 84, 189, 257 |
| BssMI | GATC | 1 cut(s) | 400 |
| BssSI | CACGAG | 1 cut(s) | 322 |
| Bst2BI | CACGAG | 1 cut(s) | 322 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| Bst6I | CTCTTC | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 4 cut(s) | 176, 180, 238, 269 |
| BstF5I | GGATG | 2 cut(s) | 94, 134 |
| BstFNI | CGCG | 3 cut(s) | 38, 174, 265 |
| BstHHI | GCGC | 2 cut(s) | 134, 267 |
| BstKTI | GATC | 1 cut(s) | 403 |
| BstMAI | GTCTC | 1 cut(s) | 233 |
| BstMBI | GATC | 1 cut(s) | 400 |
| BstMCI | CGRYCG | 1 cut(s) | 257 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 259, 262, 268 |
| BstSCI | CCNGG | 1 cut(s) | 83 |
| BstSLI | GKGCMC | 1 cut(s) | 287 |
| BstUI | CGCG | 3 cut(s) | 38, 174, 265 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| BstZI | CGGCCG | 1 cut(s) | 254 |
| BsuRI | GGCC | 4 cut(s) | 256, 262, 271, 298 |
| BtsCI | GGATG | 2 cut(s) | 94, 134 |
| BtuMI | TCGCGA | 2 cut(s) | 38, 174 |
| Cac8I | GCNNGC | 4 cut(s) | 176, 180, 238, 269 |
| CfoI | GCGC | 2 cut(s) | 134, 267 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 387 |
| CviJI | RGCY | 9 cut(s) | 83, 146, 240, 256, 262, 271, 279, 298, 344 |
| CviKI_1 | RGCY | 9 cut(s) | 83, 146, 240, 256, 262, 271, 279, 298, 344 |
| DpnI | GATC | 1 cut(s) | 402 |
| DpnII | GATC | 1 cut(s) | 400 |
| EaeI | YGGCCR | 1 cut(s) | 254 |
| EagI | CGGCCG | 1 cut(s) | 254 |
| Eam1104I | CTCTTC | 1 cut(s) | 334 |
| EarI | CTCTTC | 1 cut(s) | 334 |
| EclXI | CGGCCG | 1 cut(s) | 254 |
| Eco24I | GRGCYC | 1 cut(s) | 148 |
| Eco32I | GATATC | 1 cut(s) | 118 |
| Eco47I | GGWCC | 1 cut(s) | 387 |
| Eco52I | CGGCCG | 1 cut(s) | 254 |
| EcoRV | GATATC | 1 cut(s) | 118 |
| EcoT38I | GRGCYC | 1 cut(s) | 148 |
| FaiI | YATR | 1 cut(s) | 74 |
| FaqI | GGGAC | 3 cut(s) | 96, 371, 373 |
| FauI | CCCGC | 2 cut(s) | 26, 241 |
| Fnu4HI | GCNGC | 2 cut(s) | 254, 263 |
| FokI | GGATG | 2 cut(s) | 101, 121 |
| FriOI | GRGCYC | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 2 cut(s) | 254, 263 |
| FspBI | CTAG | 1 cut(s) | 149 |
| GlaI | GCGC | 2 cut(s) | 133, 266 |
| GluI | GCNGC | 2 cut(s) | 254, 263 |
| HaeIII | GGCC | 4 cut(s) | 256, 262, 271, 298 |
| HapII | CCGG | 5 cut(s) | 66, 84, 129, 237, 385 |
| HhaI | GCGC | 2 cut(s) | 134, 267 |
| Hin6I | GCGC | 2 cut(s) | 132, 265 |
| HinP1I | GCGC | 2 cut(s) | 132, 265 |
| HinfI | GANTC | 5 cut(s) | 59, 109, 226, 315, 366 |
| HpaII | CCGG | 5 cut(s) | 66, 84, 129, 237, 385 |
| HphI | GGTGA | 2 cut(s) | 68, 178 |
| Hpy188III | TCNNGA | 7 cut(s) | 10, 37, 66, 113, 149, 173, 333 |
| Hpy99I | CGWCG | 2 cut(s) | 143, 174 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 1 cut(s) | 373 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 259, 262, 268 |
| HspAI | GCGC | 2 cut(s) | 132, 265 |
| Kpn2I | TCCGGA | 1 cut(s) | 65 |
| KroI | GCCGGC | 1 cut(s) | 236 |
| KroNI | GCCGGC | 1 cut(s) | 238 |
| Kzo9I | GATC | 1 cut(s) | 400 |
| LguI | GCTCTTC | 1 cut(s) | 334 |
| LpnPI | CCDG | 6 cut(s) | 79, 97, 142, 250, 253, 398 |
| LweI | GCATC | 1 cut(s) | 143 |
| MaeI | CTAG | 1 cut(s) | 149 |
| MaeIII | GTNAC | 1 cut(s) | 56 |
| MalI | GATC | 1 cut(s) | 402 |
| MbiI | CCGCTC | 1 cut(s) | 253 |
| MboI | GATC | 1 cut(s) | 400 |
| MboII | GAAGA | 2 cut(s) | 158, 321 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MhlI | GDGCHC | 4 cut(s) | 148, 180, 287, 329 |
| MluCI | AATT | 1 cut(s) | 215 |
| MlyI | GAGTC | 4 cut(s) | 53, 118, 235, 309 |
| MnlI | CCTC | 9 cut(s) | 47, 73, 153, 184, 199, 252, 309, 329, 359 |
| MroI | TCCGGA | 1 cut(s) | 65 |
| MroNI | GCCGGC | 1 cut(s) | 236 |
| MseI | TTAA | 1 cut(s) | 242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 292 |
| MspI | CCGG | 5 cut(s) | 66, 84, 129, 237, 385 |
| MspR9I | CCNGG | 1 cut(s) | 85 |
| MvnI | CGCG | 3 cut(s) | 38, 174, 265 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 259, 262, 268 |
| NaeI | GCCGGC | 1 cut(s) | 238 |
| NciI | CCSGG | 1 cut(s) | 85 |
| NdeII | GATC | 1 cut(s) | 400 |
| NgoMIV | GCCGGC | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 1 cut(s) | 389 |
| NmeAIII | GCCGAG | 1 cut(s) | 282 |
| NmuCI | GTSAC | 1 cut(s) | 56 |
| NruI | TCGCGA | 2 cut(s) | 38, 174 |
| OliI | CACNNNNGTG | 1 cut(s) | 292 |
| PciSI | GCTCTTC | 1 cut(s) | 334 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PdiI | GCCGGC | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 366 |
| PkrI | GCNGC | 2 cut(s) | 255, 264 |
| PleI | GAGTC | 4 cut(s) | 53, 117, 234, 309 |
| PpsI | GAGTC | 4 cut(s) | 53, 117, 234, 309 |
| PspN4I | GGNNCC | 1 cut(s) | 389 |
| PspPI | GGNCC | 1 cut(s) | 387 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| RruI | TCGCGA | 2 cut(s) | 38, 174 |
| RseI | CAYNNNNRTG | 1 cut(s) | 292 |
| SapI | GCTCTTC | 1 cut(s) | 334 |
| SaqAI | TTAA | 1 cut(s) | 242 |
| SatI | GCNGC | 2 cut(s) | 254, 263 |
| Sau3AI | GATC | 1 cut(s) | 400 |
| Sau96I | GGNCC | 1 cut(s) | 387 |
| SchI | GAGTC | 4 cut(s) | 53, 118, 235, 309 |
| ScrFI | CCNGG | 1 cut(s) | 85 |
| SduI | GDGCHC | 4 cut(s) | 148, 180, 287, 329 |
| SetI | ASST | 2 cut(s) | 58, 210 |
| SfaNI | GCATC | 1 cut(s) | 143 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 268 |
| SinI | GGWCC | 1 cut(s) | 387 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 292 |
| SmlI | CTYRAG | 1 cut(s) | 361 |
| SmoI | CTYRAG | 1 cut(s) | 361 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SsiI | CCGC | 5 cut(s) | 4, 19, 234, 253, 263 |
| SspMI | CTAG | 1 cut(s) | 149 |
| StyD4I | CCNGG | 1 cut(s) | 83 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TasI | AATT | 1 cut(s) | 215 |
| TauI | GCSGC | 2 cut(s) | 256, 265 |
| TfiI | GAWTC | 1 cut(s) | 366 |
| Tru1I | TTAA | 1 cut(s) | 242 |
| Tru9I | TTAA | 1 cut(s) | 242 |
| TseFI | GTSAC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 1 cut(s) | 56 |
| TspDTI | ATGAA | 4 cut(s) | 93, 190, 228, 260 |
| TspGWI | ACGGA | 1 cut(s) | 127 |
| VpaK11BI | GGWCC | 1 cut(s) | 387 |
| XbaI | TCTAGA | 1 cut(s) | 148 |
| XspI | CTAG | 1 cut(s) | 149 |