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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 131 |
| AccII | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| AciI | CCGC | 3 cut(s) | 131, 300, 313 |
| AcoI | YGGCCR | 1 cut(s) | 475 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 171, 172, 409 |
| AgsI | TTSAA | 1 cut(s) | 287 |
| AjnI | CCWGG | 3 cut(s) | 159, 210, 378 |
| AluBI | AGCT | 3 cut(s) | 149, 290, 389 |
| AluI | AGCT | 3 cut(s) | 149, 290, 389 |
| Alw26I | GTCTC | 1 cut(s) | 231 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 359, 379 |
| AoxI | GGCC | 4 cut(s) | 162, 175, 309, 475 |
| ApeKI | GCWGC | 2 cut(s) | 353, 422 |
| AseI | ATTAAT | 1 cut(s) | 120 |
| AspLEI | GCGC | 2 cut(s) | 11, 204 |
| AspS9I | GGNCC | 5 cut(s) | 163, 175, 267, 310, 400 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| AvaII | GGWCC | 2 cut(s) | 267, 400 |
| BanII | GRGCYC | 2 cut(s) | 25, 43 |
| BbvI | GCAGC | 2 cut(s) | 365, 409 |
| BceAI | ACGGC | 1 cut(s) | 324 |
| BciT130I | CCWGG | 3 cut(s) | 161, 212, 380 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BcoDI | GTCTC | 1 cut(s) | 231 |
| BfaI | CTAG | 3 cut(s) | 150, 350, 487 |
| BglII | AGATCT | 1 cut(s) | 280 |
| BisI | GCNGC | 2 cut(s) | 354, 423 |
| BlsI | GCNGC | 2 cut(s) | 355, 424 |
| Bme1390I | CCNGG | 4 cut(s) | 112, 161, 212, 380 |
| Bme18I | GGWCC | 2 cut(s) | 267, 400 |
| BmgT120I | GGNCC | 5 cut(s) | 163, 175, 267, 310, 400 |
| BmiI | GGNNCC | 3 cut(s) | 176, 269, 330 |
| BmrFI | CCNGG | 4 cut(s) | 112, 161, 212, 380 |
| BmsI | GCATC | 2 cut(s) | 20, 418 |
| BpmI | CTGGAG | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 2 cut(s) | 55, 369 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 3 cut(s) | 110, 159, 211 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 90, 120 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 171, 172, 409 |
| Bse1I | ACTGG | 3 cut(s) | 73, 342, 432 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseBI | CCWGG | 3 cut(s) | 161, 212, 380 |
| BseDI | CCNNGG | 3 cut(s) | 110, 159, 211 |
| BseGI | GGATG | 2 cut(s) | 11, 451 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 171, 172, 409 |
| BseMII | CTCAG | 1 cut(s) | 386 |
| BseNI | ACTGG | 3 cut(s) | 73, 342, 432 |
| BseRI | GAGGAG | 1 cut(s) | 187 |
| BseXI | GCAGC | 2 cut(s) | 365, 409 |
| Bsh1236I | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshFI | GGCC | 4 cut(s) | 164, 177, 311, 477 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 112 |
| BslFI | GGGAC | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 171, 172, 409 |
| BsmAI | GTCTC | 1 cut(s) | 231 |
| BsmFI | GGGAC | 1 cut(s) | 253 |
| BsnI | GGCC | 4 cut(s) | 164, 177, 311, 477 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 43 |
| Bsp143I | GATC | 1 cut(s) | 280 |
| Bsp68I | TCGCGA | 3 cut(s) | 51, 137, 393 |
| BspACI | CCGC | 3 cut(s) | 131, 300, 313 |
| BspANI | GGCC | 4 cut(s) | 164, 177, 311, 477 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspFNI | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| BspLI | GGNNCC | 3 cut(s) | 176, 269, 330 |
| BspQI | GCTCTTC | 1 cut(s) | 48 |
| BsrBI | CCGCTC | 1 cut(s) | 131 |
| BsrI | ACTGG | 3 cut(s) | 73, 342, 432 |
| BssECI | CCNNGG | 3 cut(s) | 110, 159, 211 |
| BssMI | GATC | 1 cut(s) | 280 |
| Bst2UI | CCWGG | 3 cut(s) | 161, 212, 380 |
| Bst4CI | ACNGT | 1 cut(s) | 96 |
| Bst6I | CTCTTC | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 6 cut(s) | 53, 57, 156, 313, 391, 475 |
| BstDEI | CTNAG | 1 cut(s) | 372 |
| BstF5I | GGATG | 2 cut(s) | 11, 451 |
| BstFNI | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| BstHHI | GCGC | 2 cut(s) | 11, 204 |
| BstKTI | GATC | 1 cut(s) | 283 |
| BstMAI | GTCTC | 1 cut(s) | 231 |
| BstMBI | GATC | 1 cut(s) | 280 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 155, 250, 308, 428 |
| BstNI | CCWGG | 3 cut(s) | 161, 212, 380 |
| BstSCI | CCNGG | 4 cut(s) | 110, 159, 210, 378 |
| BstUI | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| BstV1I | GCAGC | 2 cut(s) | 365, 409 |
| BstX2I | RGATCY | 1 cut(s) | 280 |
| BstYI | RGATCY | 1 cut(s) | 280 |
| BsuRI | GGCC | 4 cut(s) | 164, 177, 311, 477 |
| BtgZI | GCGATG | 1 cut(s) | 32 |
| BtsCI | GGATG | 2 cut(s) | 11, 451 |
| BtuMI | TCGCGA | 3 cut(s) | 51, 137, 393 |
| Cac8I | GCNNGC | 6 cut(s) | 53, 57, 156, 313, 391, 475 |
| CaiI | CAGNNNCTG | 2 cut(s) | 359, 379 |
| CfoI | GCGC | 2 cut(s) | 11, 204 |
| Cfr13I | GGNCC | 5 cut(s) | 163, 175, 267, 310, 400 |
| CseI | GACGC | 1 cut(s) | 428 |
| CviAII | CATG | 2 cut(s) | 323, 470 |
| DdeI | CTNAG | 1 cut(s) | 372 |
| DpnI | GATC | 1 cut(s) | 282 |
| DpnII | GATC | 1 cut(s) | 280 |
| EaeI | YGGCCR | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 48 |
| EarI | CTCTTC | 1 cut(s) | 48 |
| Eco24I | GRGCYC | 2 cut(s) | 25, 43 |
| Eco47I | GGWCC | 2 cut(s) | 267, 400 |
| EcoO109I | RGGNCCY | 1 cut(s) | 175 |
| EcoRII | CCWGG | 3 cut(s) | 159, 210, 378 |
| EcoT38I | GRGCYC | 2 cut(s) | 25, 43 |
| FaeI | CATG | 2 cut(s) | 326, 473 |
| FaiI | YATR | 2 cut(s) | 324, 471 |
| FaqI | GGGAC | 1 cut(s) | 253 |
| FatI | CATG | 2 cut(s) | 322, 469 |
| FauI | CCCGC | 1 cut(s) | 320 |
| Fnu4HI | GCNGC | 2 cut(s) | 354, 423 |
| FokI | GGATG | 1 cut(s) | 458 |
| FriOI | GRGCYC | 2 cut(s) | 25, 43 |
| Fsp4HI | GCNGC | 2 cut(s) | 354, 423 |
| FspBI | CTAG | 3 cut(s) | 150, 350, 487 |
| GlaI | GCGC | 2 cut(s) | 10, 203 |
| GluI | GCNGC | 2 cut(s) | 354, 423 |
| GsuI | CTGGAG | 1 cut(s) | 359 |
| HaeIII | GGCC | 4 cut(s) | 164, 177, 311, 477 |
| HapII | CCGG | 1 cut(s) | 112 |
| HgaI | GACGC | 1 cut(s) | 428 |
| HhaI | GCGC | 2 cut(s) | 11, 204 |
| Hin1II | CATG | 2 cut(s) | 326, 473 |
| Hin6I | GCGC | 2 cut(s) | 9, 202 |
| HinP1I | GCGC | 2 cut(s) | 9, 202 |
| HinfI | GANTC | 4 cut(s) | 103, 194, 226, 246 |
| HpaII | CCGG | 1 cut(s) | 112 |
| Hpy188I | TCNGA | 3 cut(s) | 361, 375, 404 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 136, 392 |
| HpyCH4III | ACNGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 182 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 155, 250, 308, 428 |
| HpyF3I | CTNAG | 1 cut(s) | 372 |
| Hsp92II | CATG | 2 cut(s) | 326, 473 |
| HspAI | GCGC | 2 cut(s) | 9, 202 |
| Kzo9I | GATC | 1 cut(s) | 280 |
| LguI | GCTCTTC | 1 cut(s) | 48 |
| LmnI | GCTCC | 2 cut(s) | 340, 412 |
| Lsp1109I | GCAGC | 2 cut(s) | 365, 409 |
| LweI | GCATC | 2 cut(s) | 20, 418 |
| MaeI | CTAG | 3 cut(s) | 150, 350, 487 |
| MaeIII | GTNAC | 2 cut(s) | 96, 304 |
| MalI | GATC | 1 cut(s) | 282 |
| MbiI | CCGCTC | 1 cut(s) | 131 |
| MboI | GATC | 1 cut(s) | 280 |
| MboII | GAAGA | 3 cut(s) | 35, 254, 275 |
| MfeI | CAATTG | 1 cut(s) | 293 |
| MflI | RGATCY | 1 cut(s) | 280 |
| MhlI | GDGCHC | 2 cut(s) | 25, 43 |
| MluCI | AATT | 1 cut(s) | 293 |
| MlyI | GAGTC | 2 cut(s) | 188, 220 |
| MmeI | TCCRAC | 1 cut(s) | 427 |
| MnlI | CCTC | 6 cut(s) | 30, 208, 319, 326, 367, 388 |
| MseI | TTAA | 2 cut(s) | 120, 464 |
| MspA1I | CMGCKG | 1 cut(s) | 302 |
| MspI | CCGG | 1 cut(s) | 112 |
| MspR9I | CCNGG | 4 cut(s) | 112, 161, 212, 380 |
| MunI | CAATTG | 1 cut(s) | 293 |
| MvaI | CCWGG | 3 cut(s) | 161, 212, 380 |
| MvnI | CGCG | 5 cut(s) | 51, 137, 202, 204, 393 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 155, 250, 308, 428 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NdeII | GATC | 1 cut(s) | 280 |
| NlaIII | CATG | 2 cut(s) | 326, 473 |
| NlaIV | GGNNCC | 3 cut(s) | 176, 269, 330 |
| NmuCI | GTSAC | 1 cut(s) | 304 |
| NruI | TCGCGA | 3 cut(s) | 51, 137, 393 |
| PciSI | GCTCTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 2 cut(s) | 103, 246 |
| PkrI | GCNGC | 2 cut(s) | 355, 424 |
| PleI | GAGTC | 2 cut(s) | 188, 220 |
| PpsI | GAGTC | 2 cut(s) | 188, 220 |
| PshBI | ATTAAT | 1 cut(s) | 120 |
| Psp6I | CCWGG | 3 cut(s) | 159, 210, 378 |
| PspGI | CCWGG | 3 cut(s) | 159, 210, 378 |
| PspN4I | GGNNCC | 3 cut(s) | 176, 269, 330 |
| PspPI | GGNCC | 5 cut(s) | 163, 175, 267, 310, 400 |
| PstNI | CAGNNNCTG | 2 cut(s) | 359, 379 |
| PsuI | RGATCY | 1 cut(s) | 280 |
| RruI | TCGCGA | 3 cut(s) | 51, 137, 393 |
| SapI | GCTCTTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 2 cut(s) | 120, 464 |
| SatI | GCNGC | 2 cut(s) | 354, 423 |
| Sau3AI | GATC | 1 cut(s) | 280 |
| Sau96I | GGNCC | 5 cut(s) | 163, 175, 267, 310, 400 |
| SchI | GAGTC | 2 cut(s) | 188, 220 |
| ScrFI | CCNGG | 4 cut(s) | 112, 161, 212, 380 |
| SduI | GDGCHC | 2 cut(s) | 25, 43 |
| SetI | ASST | 5 cut(s) | 151, 292, 381, 391, 399 |
| SfaNI | GCATC | 2 cut(s) | 20, 418 |
| SinI | GGWCC | 2 cut(s) | 267, 400 |
| SmlI | CTYRAG | 2 cut(s) | 34, 384 |
| SmoI | CTYRAG | 2 cut(s) | 34, 384 |
| Sse9I | AATT | 1 cut(s) | 293 |
| SsiI | CCGC | 3 cut(s) | 131, 300, 313 |
| SspMI | CTAG | 3 cut(s) | 150, 350, 487 |
| StyD4I | CCNGG | 4 cut(s) | 110, 159, 210, 378 |
| TaaI | ACNGT | 1 cut(s) | 96 |
| TaqI | TCGA | 1 cut(s) | 318 |
| TaqII | GACCGA | 1 cut(s) | 255 |
| TasI | AATT | 1 cut(s) | 293 |
| TfiI | GAWTC | 2 cut(s) | 103, 246 |
| Tru1I | TTAA | 2 cut(s) | 120, 464 |
| Tru9I | TTAA | 2 cut(s) | 120, 464 |
| TseFI | GTSAC | 1 cut(s) | 304 |
| TseI | GCWGC | 2 cut(s) | 353, 422 |
| Tsp45I | GTSAC | 1 cut(s) | 304 |
| TspDTI | ATGAA | 4 cut(s) | 35, 67, 138, 462 |
| TspGWI | ACGGA | 1 cut(s) | 4 |
| VpaK11BI | GGWCC | 2 cut(s) | 267, 400 |
| VspI | ATTAAT | 1 cut(s) | 120 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 439 |
| XspI | CTAG | 3 cut(s) | 150, 350, 487 |