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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 126 |
| AccBSI | CCGCTC | 1 cut(s) | 292 |
| AcoI | YGGCCR | 3 cut(s) | 6, 154, 413 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 136, 275, 382, 444, 673 |
| AgeI | ACCGGT | 2 cut(s) | 375, 437 |
| AgsI | TTSAA | 2 cut(s) | 536, 656 |
| AluBI | AGCT | 5 cut(s) | 180, 594, 742, 762, 769 |
| AluI | AGCT | 5 cut(s) | 180, 594, 742, 762, 769 |
| Alw21I | GWGCWC | 2 cut(s) | 182, 744 |
| Alw26I | GTCTC | 1 cut(s) | 485 |
| AoxI | GGCC | 6 cut(s) | 6, 58, 95, 154, 413, 505 |
| AsiGI | ACCGGT | 2 cut(s) | 375, 437 |
| AspA2I | CCTAGG | 1 cut(s) | 671 |
| AspLEI | GCGC | 7 cut(s) | 127, 172, 273, 450, 701, 718, 778 |
| AspS9I | GGNCC | 4 cut(s) | 12, 378, 506, 676 |
| AsuC2I | CCSGG | 2 cut(s) | 10, 35 |
| AsuHPI | GGTGA | 2 cut(s) | 279, 297 |
| AvaII | GGWCC | 3 cut(s) | 12, 378, 676 |
| AvrII | CCTAGG | 1 cut(s) | 671 |
| BaeGI | GKGCMC | 1 cut(s) | 822 |
| BanII | GRGCYC | 2 cut(s) | 182, 744 |
| Bbv12I | GWGCWC | 2 cut(s) | 182, 744 |
| BccI | CCATC | 3 cut(s) | 38, 165, 564 |
| BceAI | ACGGC | 3 cut(s) | 73, 403, 428 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 607, 641 |
| BciVI | GTATCC | 1 cut(s) | 510 |
| BcnI | CCSGG | 2 cut(s) | 10, 35 |
| BcoDI | GTCTC | 1 cut(s) | 485 |
| BfaI | CTAG | 5 cut(s) | 393, 429, 444, 495, 672 |
| BfoI | RGCGCY | 1 cut(s) | 451 |
| BfuI | GTATCC | 1 cut(s) | 510 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 801 |
| BisI | GCNGC | 6 cut(s) | 154, 173, 214, 416, 697, 714 |
| BlnI | CCTAGG | 1 cut(s) | 671 |
| BlsI | GCNGC | 6 cut(s) | 155, 174, 215, 417, 698, 715 |
| Bme1390I | CCNGG | 2 cut(s) | 10, 35 |
| Bme18I | GGWCC | 3 cut(s) | 12, 378, 676 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 378, 506, 676 |
| BmiI | GGNNCC | 4 cut(s) | 13, 665, 677, 678 |
| BmrFI | CCNGG | 2 cut(s) | 10, 35 |
| BmsI | GCATC | 4 cut(s) | 200, 490, 507, 826 |
| BpuMI | CCSGG | 2 cut(s) | 10, 35 |
| BsaJI | CCNNGG | 3 cut(s) | 381, 671, 750 |
| BsaWI | WCCGGW | 5 cut(s) | 184, 307, 375, 437, 810 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 136, 275, 382, 444, 673 |
| Bse118I | RCCGGY | 5 cut(s) | 4, 332, 375, 437, 795 |
| BseDI | CCNNGG | 3 cut(s) | 381, 671, 750 |
| BseGI | GGATG | 3 cut(s) | 30, 157, 481 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 136, 275, 382, 444, 673 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 822 |
| BseX3I | CGGCCG | 2 cut(s) | 6, 413 |
| Bsh1285I | CGRYCG | 3 cut(s) | 9, 416, 615 |
| BshFI | GGCC | 6 cut(s) | 8, 60, 97, 156, 415, 507 |
| BshTI | ACCGGT | 2 cut(s) | 375, 437 |
| BsiEI | CGRYCG | 3 cut(s) | 9, 416, 615 |
| BsiHKAI | GWGCWC | 2 cut(s) | 182, 744 |
| BslFI | GGGAC | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 136, 275, 382, 444, 673 |
| BsmAI | GTCTC | 1 cut(s) | 485 |
| BsmFI | GGGAC | 1 cut(s) | 689 |
| BsnI | GGCC | 6 cut(s) | 8, 60, 97, 156, 415, 507 |
| Bsp1286I | GDGCHC | 3 cut(s) | 182, 744, 822 |
| Bsp143I | GATC | 3 cut(s) | 250, 691, 719 |
| Bsp68I | TCGCGA | 3 cut(s) | 193, 561, 617 |
| BspANI | GGCC | 6 cut(s) | 8, 60, 97, 156, 415, 507 |
| BspLI | GGNNCC | 4 cut(s) | 13, 665, 677, 678 |
| BsrBI | CCGCTC | 1 cut(s) | 292 |
| BsrFI | RCCGGY | 5 cut(s) | 4, 332, 375, 437, 795 |
| BssAI | RCCGGY | 5 cut(s) | 4, 332, 375, 437, 795 |
| BssECI | CCNNGG | 3 cut(s) | 381, 671, 750 |
| BssMI | GATC | 3 cut(s) | 250, 691, 719 |
| BssT1I | CCWWGG | 2 cut(s) | 381, 671 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 20, 218, 338, 744, 797 |
| BstDEI | CTNAG | 1 cut(s) | 758 |
| BstEII | GGTNACC | 1 cut(s) | 303 |
| BstF5I | GGATG | 3 cut(s) | 30, 157, 481 |
| BstH2I | RGCGCY | 1 cut(s) | 451 |
| BstHHI | GCGC | 7 cut(s) | 127, 172, 273, 450, 701, 718, 778 |
| BstKTI | GATC | 3 cut(s) | 253, 694, 722 |
| BstMAI | GTCTC | 1 cut(s) | 485 |
| BstMBI | GATC | 3 cut(s) | 250, 691, 719 |
| BstMCI | CGRYCG | 3 cut(s) | 9, 416, 615 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 270, 504, 583, 775, 801 |
| BstPI | GGTNACC | 1 cut(s) | 303 |
| BstSCI | CCNGG | 2 cut(s) | 8, 33 |
| BstSLI | GKGCMC | 1 cut(s) | 822 |
| BstZI | CGGCCG | 2 cut(s) | 6, 413 |
| BsuI | GTATCC | 1 cut(s) | 510 |
| BsuRI | GGCC | 6 cut(s) | 8, 60, 97, 156, 415, 507 |
| BtgZI | GCGATG | 1 cut(s) | 542 |
| BtsCI | GGATG | 3 cut(s) | 30, 157, 481 |
| BtuMI | TCGCGA | 3 cut(s) | 193, 561, 617 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 20, 218, 338, 744, 797 |
| CfoI | GCGC | 7 cut(s) | 127, 172, 273, 450, 701, 718, 778 |
| Cfr10I | RCCGGY | 5 cut(s) | 4, 332, 375, 437, 795 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 378, 506, 676 |
| CseI | GACGC | 1 cut(s) | 50 |
| CspAI | ACCGGT | 2 cut(s) | 375, 437 |
| CviAII | CATG | 1 cut(s) | 478 |
| DdeI | CTNAG | 1 cut(s) | 758 |
| DpnI | GATC | 3 cut(s) | 252, 693, 721 |
| DpnII | GATC | 3 cut(s) | 250, 691, 719 |
| EaeI | YGGCCR | 3 cut(s) | 6, 154, 413 |
| EagI | CGGCCG | 2 cut(s) | 6, 413 |
| EciI | GGCGGA | 2 cut(s) | 190, 350 |
| Ecl136II | GAGCTC | 2 cut(s) | 180, 742 |
| EclXI | CGGCCG | 2 cut(s) | 6, 413 |
| Eco130I | CCWWGG | 2 cut(s) | 381, 671 |
| Eco147I | AGGCCT | 1 cut(s) | 97 |
| Eco24I | GRGCYC | 2 cut(s) | 182, 744 |
| Eco32I | GATATC | 1 cut(s) | 735 |
| Eco47I | GGWCC | 3 cut(s) | 12, 378, 676 |
| Eco52I | CGGCCG | 2 cut(s) | 6, 413 |
| Eco53kI | GAGCTC | 2 cut(s) | 180, 742 |
| Eco91I | GGTNACC | 1 cut(s) | 303 |
| EcoICRI | GAGCTC | 2 cut(s) | 180, 742 |
| EcoO109I | RGGNCCY | 1 cut(s) | 676 |
| EcoO65I | GGTNACC | 1 cut(s) | 303 |
| EcoRV | GATATC | 1 cut(s) | 735 |
| EcoT14I | CCWWGG | 2 cut(s) | 381, 671 |
| EcoT22I | ATGCAT | 1 cut(s) | 483 |
| EcoT38I | GRGCYC | 2 cut(s) | 182, 744 |
| ErhI | CCWWGG | 2 cut(s) | 381, 671 |
| FaeI | CATG | 1 cut(s) | 481 |
| FaiI | YATR | 6 cut(s) | 256, 423, 479, 541, 550, 834 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 333, 365 |
| FaqI | GGGAC | 1 cut(s) | 689 |
| FatI | CATG | 1 cut(s) | 477 |
| FauI | CCCGC | 4 cut(s) | 27, 82, 276, 651 |
| Fnu4HI | GCNGC | 6 cut(s) | 154, 173, 214, 416, 697, 714 |
| FokI | GGATG | 3 cut(s) | 17, 144, 468 |
| FriOI | GRGCYC | 2 cut(s) | 182, 744 |
| Fsp4HI | GCNGC | 6 cut(s) | 154, 173, 214, 416, 697, 714 |
| FspAI | RTGCGCAY | 1 cut(s) | 126 |
| FspBI | CTAG | 5 cut(s) | 393, 429, 444, 495, 672 |
| FspI | TGCGCA | 1 cut(s) | 126 |
| GlaI | GCGC | 7 cut(s) | 126, 171, 272, 449, 700, 717, 777 |
| GluI | GCNGC | 6 cut(s) | 154, 173, 214, 416, 697, 714 |
| HaeII | RGCGCY | 1 cut(s) | 451 |
| HaeIII | GGCC | 6 cut(s) | 8, 60, 97, 156, 415, 507 |
| HgaI | GACGC | 1 cut(s) | 50 |
| HhaI | GCGC | 7 cut(s) | 127, 172, 273, 450, 701, 718, 778 |
| Hin1II | CATG | 1 cut(s) | 481 |
| Hin6I | GCGC | 7 cut(s) | 125, 170, 271, 448, 699, 716, 776 |
| HinP1I | GCGC | 7 cut(s) | 125, 170, 271, 448, 699, 716, 776 |
| HinfI | GANTC | 3 cut(s) | 26, 532, 639 |
| HphI | GGTGA | 2 cut(s) | 279, 297 |
| Hpy188I | TCNGA | 3 cut(s) | 92, 732, 739 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 192, 560, 616, 653 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 566 |
| HpyAV | CCTTC | 3 cut(s) | 87, 471, 832 |
| HpyCH4V | TGCA | 1 cut(s) | 481 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 270, 504, 583, 775, 801 |
| HpyF3I | CTNAG | 1 cut(s) | 758 |
| Hsp92II | CATG | 1 cut(s) | 481 |
| HspAI | GCGC | 7 cut(s) | 125, 170, 271, 448, 699, 716, 776 |
| KflI | GGGWCCC | 1 cut(s) | 676 |
| KroI | GCCGGC | 2 cut(s) | 4, 795 |
| KroNI | GCCGGC | 2 cut(s) | 6, 797 |
| Kzo9I | GATC | 3 cut(s) | 250, 691, 719 |
| LmnI | GCTCC | 3 cut(s) | 177, 733, 739 |
| LweI | GCATC | 4 cut(s) | 200, 490, 507, 826 |
| MaeI | CTAG | 5 cut(s) | 393, 429, 444, 495, 672 |
| MaeIII | GTNAC | 1 cut(s) | 303 |
| MalI | GATC | 3 cut(s) | 252, 693, 721 |
| MbiI | CCGCTC | 1 cut(s) | 292 |
| MboI | GATC | 3 cut(s) | 250, 691, 719 |
| MboII | GAAGA | 2 cut(s) | 341, 648 |
| MhlI | GDGCHC | 3 cut(s) | 182, 744, 822 |
| MluCI | AATT | 1 cut(s) | 314 |
| Mph1103I | ATGCAT | 1 cut(s) | 483 |
| MroNI | GCCGGC | 2 cut(s) | 4, 795 |
| MseI | TTAA | 1 cut(s) | 806 |
| MspR9I | CCNGG | 2 cut(s) | 10, 35 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 270, 504, 583, 775, 801 |
| NaeI | GCCGGC | 2 cut(s) | 6, 797 |
| NciI | CCSGG | 2 cut(s) | 10, 35 |
| NdeII | GATC | 3 cut(s) | 250, 691, 719 |
| NgoMIV | GCCGGC | 2 cut(s) | 4, 795 |
| NlaIII | CATG | 1 cut(s) | 481 |
| NlaIV | GGNNCC | 4 cut(s) | 13, 665, 677, 678 |
| NmuCI | GTSAC | 1 cut(s) | 303 |
| NruI | TCGCGA | 3 cut(s) | 193, 561, 617 |
| NsbI | TGCGCA | 1 cut(s) | 126 |
| NsiI | ATGCAT | 1 cut(s) | 483 |
| PceI | AGGCCT | 1 cut(s) | 97 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 63 |
| PdiI | GCCGGC | 2 cut(s) | 6, 797 |
| PfeI | GAWTC | 3 cut(s) | 26, 532, 639 |
| PfoI | TCCNGGA | 1 cut(s) | 33 |
| PinAI | ACCGGT | 2 cut(s) | 375, 437 |
| PkrI | GCNGC | 6 cut(s) | 155, 174, 215, 417, 698, 715 |
| PpuMI | RGGWCCY | 1 cut(s) | 676 |
| Psp124BI | GAGCTC | 2 cut(s) | 182, 744 |
| Psp5II | RGGWCCY | 1 cut(s) | 676 |
| PspEI | GGTNACC | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 4 cut(s) | 13, 665, 677, 678 |
| PspPI | GGNCC | 4 cut(s) | 12, 378, 506, 676 |
| PspPPI | RGGWCCY | 1 cut(s) | 676 |
| RruI | TCGCGA | 3 cut(s) | 193, 561, 617 |
| SacI | GAGCTC | 2 cut(s) | 182, 744 |
| SaqAI | TTAA | 1 cut(s) | 806 |
| SatI | GCNGC | 6 cut(s) | 154, 173, 214, 416, 697, 714 |
| Sau3AI | GATC | 3 cut(s) | 250, 691, 719 |
| Sau96I | GGNCC | 4 cut(s) | 12, 378, 506, 676 |
| ScrFI | CCNGG | 2 cut(s) | 10, 35 |
| SduI | GDGCHC | 3 cut(s) | 182, 744, 822 |
| SetI | ASST | 9 cut(s) | 152, 182, 235, 305, 360, 596, 744, 764, 771 |
| SfaNI | GCATC | 4 cut(s) | 200, 490, 507, 826 |
| SinI | GGWCC | 3 cut(s) | 12, 378, 676 |
| Sse9I | AATT | 1 cut(s) | 314 |
| SseBI | AGGCCT | 1 cut(s) | 97 |
| SspMI | CTAG | 5 cut(s) | 393, 429, 444, 495, 672 |
| SstI | GAGCTC | 2 cut(s) | 182, 744 |
| StuI | AGGCCT | 1 cut(s) | 97 |
| StyD4I | CCNGG | 2 cut(s) | 8, 33 |
| StyI | CCWWGG | 2 cut(s) | 381, 671 |
| TaqI | TCGA | 1 cut(s) | 102 |
| TaqII | GACCGA | 1 cut(s) | 601 |
| TasI | AATT | 1 cut(s) | 314 |
| TauI | GCSGC | 6 cut(s) | 156, 175, 216, 418, 699, 716 |
| TfiI | GAWTC | 3 cut(s) | 26, 532, 639 |
| Tru1I | TTAA | 1 cut(s) | 806 |
| Tru9I | TTAA | 1 cut(s) | 806 |
| TseFI | GTSAC | 1 cut(s) | 303 |
| Tsp45I | GTSAC | 1 cut(s) | 303 |
| TspDTI | ATGAA | 1 cut(s) | 335 |
| TspGWI | ACGGA | 2 cut(s) | 55, 215 |
| VpaK11BI | GGWCC | 3 cut(s) | 12, 378, 676 |
| XmaJI | CCTAGG | 1 cut(s) | 671 |
| XspI | CTAG | 5 cut(s) | 393, 429, 444, 495, 672 |
| Zsp2I | ATGCAT | 1 cut(s) | 483 |