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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 442 |
| AccB1I | GGYRCC | 1 cut(s) | 422 |
| AccII | CGCG | 2 cut(s) | 219, 244 |
| AciI | CCGC | 4 cut(s) | 219, 242, 244, 391 |
| AcoI | YGGCCR | 3 cut(s) | 94, 169, 369 |
| AcyI | GRCGYC | 1 cut(s) | 423 |
| AfaI | GTAC | 1 cut(s) | 436 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 21, 135, 397, 419 |
| AjnI | CCWGG | 2 cut(s) | 366, 412 |
| AluBI | AGCT | 1 cut(s) | 234 |
| AluI | AGCT | 1 cut(s) | 234 |
| AoxI | GGCC | 4 cut(s) | 94, 169, 252, 369 |
| ApeKI | GCWGC | 2 cut(s) | 42, 231 |
| AspLEI | GCGC | 1 cut(s) | 425 |
| AspS9I | GGNCC | 1 cut(s) | 353 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AvaII | GGWCC | 1 cut(s) | 353 |
| BalI | TGGCCA | 3 cut(s) | 96, 171, 371 |
| BanI | GGYRCC | 1 cut(s) | 422 |
| BanII | GRGCYC | 1 cut(s) | 159 |
| BbvI | GCAGC | 2 cut(s) | 29, 243 |
| BccI | CCATC | 3 cut(s) | 77, 143, 152 |
| BciT130I | CCWGG | 2 cut(s) | 368, 414 |
| BciVI | GTATCC | 1 cut(s) | 249 |
| BfoI | RGCGCY | 1 cut(s) | 426 |
| BfuI | GTATCC | 1 cut(s) | 249 |
| BisI | GCNGC | 4 cut(s) | 43, 220, 232, 391 |
| BlsI | GCNGC | 4 cut(s) | 44, 221, 233, 392 |
| Bme1390I | CCNGG | 2 cut(s) | 368, 414 |
| Bme18I | GGWCC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 1 cut(s) | 353 |
| BmiI | GGNNCC | 1 cut(s) | 424 |
| BmrFI | CCNGG | 2 cut(s) | 368, 414 |
| BmrI | ACTGGG | 1 cut(s) | 144 |
| BmuI | ACTGGG | 1 cut(s) | 144 |
| BpmI | CTGGAG | 1 cut(s) | 320 |
| Bsa29I | ATCGAT | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 3 cut(s) | 242, 356, 413 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 21, 135, 397, 419 |
| Bse1I | ACTGG | 3 cut(s) | 139, 286, 355 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseBI | CCWGG | 2 cut(s) | 368, 414 |
| BseCI | ATCGAT | 1 cut(s) | 147 |
| BseDI | CCNNGG | 3 cut(s) | 242, 356, 413 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 21, 135, 397, 419 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 3 cut(s) | 139, 286, 355 |
| BseXI | GCAGC | 2 cut(s) | 29, 243 |
| Bsh1236I | CGCG | 2 cut(s) | 219, 244 |
| BshFI | GGCC | 4 cut(s) | 96, 171, 254, 371 |
| BshNI | GGYRCC | 1 cut(s) | 422 |
| BshVI | ATCGAT | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 21, 135, 397, 419 |
| BsnI | GGCC | 4 cut(s) | 96, 171, 254, 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| BspACI | CCGC | 4 cut(s) | 219, 242, 244, 391 |
| BspANI | GGCC | 4 cut(s) | 96, 171, 254, 371 |
| BspCNI | CTCAG | 1 cut(s) | 347 |
| BspDI | ATCGAT | 1 cut(s) | 147 |
| BspFNI | CGCG | 2 cut(s) | 219, 244 |
| BspLI | GGNNCC | 1 cut(s) | 424 |
| BspT107I | GGYRCC | 1 cut(s) | 422 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BsrI | ACTGG | 3 cut(s) | 139, 286, 355 |
| BssECI | CCNNGG | 3 cut(s) | 242, 356, 413 |
| BssMI | GATC | 1 cut(s) | 214 |
| BssNI | GRCGYC | 1 cut(s) | 423 |
| BssT1I | CCWWGG | 1 cut(s) | 356 |
| Bst2UI | CCWGG | 2 cut(s) | 368, 414 |
| Bst4CI | ACNGT | 1 cut(s) | 434 |
| BstACI | GRCGYC | 1 cut(s) | 423 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 252 |
| BstDEI | CTNAG | 1 cut(s) | 334 |
| BstDSI | CCRYGG | 1 cut(s) | 242 |
| BstFNI | CGCG | 2 cut(s) | 219, 244 |
| BstH2I | RGCGCY | 1 cut(s) | 426 |
| BstHHI | GCGC | 1 cut(s) | 425 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 163, 228 |
| BstNI | CCWGG | 2 cut(s) | 368, 414 |
| BstSCI | CCNGG | 2 cut(s) | 366, 412 |
| BstUI | CGCG | 2 cut(s) | 219, 244 |
| BstV1I | GCAGC | 2 cut(s) | 29, 243 |
| Bsu15I | ATCGAT | 1 cut(s) | 147 |
| BsuI | GTATCC | 1 cut(s) | 249 |
| BsuRI | GGCC | 4 cut(s) | 96, 171, 254, 371 |
| BsuTUI | ATCGAT | 1 cut(s) | 147 |
| BtgI | CCRYGG | 1 cut(s) | 242 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 348 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 252 |
| CfoI | GCGC | 1 cut(s) | 425 |
| Cfr13I | GGNCC | 1 cut(s) | 353 |
| Cfr42I | CCGCGG | 1 cut(s) | 245 |
| ClaI | ATCGAT | 1 cut(s) | 147 |
| Csp6I | GTAC | 1 cut(s) | 435 |
| CviAII | CATG | 3 cut(s) | 18, 167, 395 |
| CviQI | GTAC | 1 cut(s) | 435 |
| DdeI | CTNAG | 1 cut(s) | 334 |
| DinI | GGCGCC | 1 cut(s) | 424 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 3 cut(s) | 94, 169, 369 |
| Eco130I | CCWWGG | 1 cut(s) | 356 |
| Eco24I | GRGCYC | 1 cut(s) | 159 |
| Eco47I | GGWCC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 2 cut(s) | 366, 412 |
| EcoT14I | CCWWGG | 1 cut(s) | 356 |
| EcoT38I | GRGCYC | 1 cut(s) | 159 |
| EgeI | GGCGCC | 1 cut(s) | 424 |
| EheI | GGCGCC | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 356 |
| FaeI | CATG | 3 cut(s) | 21, 170, 398 |
| FaiI | YATR | 6 cut(s) | 19, 168, 203, 228, 396, 442 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 308, 340 |
| FatI | CATG | 3 cut(s) | 17, 166, 394 |
| Fnu4HI | GCNGC | 4 cut(s) | 43, 220, 232, 391 |
| FriOI | GRGCYC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 4 cut(s) | 43, 220, 232, 391 |
| GlaI | GCGC | 1 cut(s) | 424 |
| GluI | GCNGC | 4 cut(s) | 43, 220, 232, 391 |
| GsuI | CTGGAG | 1 cut(s) | 320 |
| HaeII | RGCGCY | 1 cut(s) | 426 |
| HaeIII | GGCC | 4 cut(s) | 96, 171, 254, 371 |
| HhaI | GCGC | 1 cut(s) | 425 |
| Hin1I | GRCGYC | 1 cut(s) | 423 |
| Hin1II | CATG | 3 cut(s) | 21, 170, 398 |
| Hin6I | GCGC | 1 cut(s) | 423 |
| HinP1I | GCGC | 1 cut(s) | 423 |
| HinfI | GANTC | 1 cut(s) | 179 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy188I | TCNGA | 2 cut(s) | 89, 184 |
| Hpy188III | TCNNGA | 1 cut(s) | 299 |
| HpyAV | CCTTC | 2 cut(s) | 21, 56 |
| HpyCH4III | ACNGT | 1 cut(s) | 434 |
| HpyCH4V | TGCA | 2 cut(s) | 166, 315 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 163, 228 |
| HpyF3I | CTNAG | 1 cut(s) | 334 |
| Hsp92I | GRCGYC | 1 cut(s) | 423 |
| Hsp92II | CATG | 3 cut(s) | 21, 170, 398 |
| HspAI | GCGC | 1 cut(s) | 423 |
| KasI | GGCGCC | 1 cut(s) | 422 |
| KspI | CCGCGG | 1 cut(s) | 245 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LpnPI | CCDG | 9 cut(s) | 120, 236, 267, 284, 336, 353, 380, 399, 426 |
| Lsp1109I | GCAGC | 2 cut(s) | 29, 243 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MboII | GAAGA | 1 cut(s) | 316 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MlsI | TGGCCA | 3 cut(s) | 96, 171, 371 |
| MluCI | AATT | 2 cut(s) | 173, 210 |
| MluNI | TGGCCA | 3 cut(s) | 96, 171, 371 |
| Mly113I | GGCGCC | 1 cut(s) | 423 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MnlI | CCTC | 5 cut(s) | 25, 46, 320, 389, 437 |
| Mox20I | TGGCCA | 3 cut(s) | 96, 171, 371 |
| MscI | TGGCCA | 3 cut(s) | 96, 171, 371 |
| Msp20I | TGGCCA | 3 cut(s) | 96, 171, 371 |
| MspA1I | CMGCKG | 1 cut(s) | 244 |
| MspR9I | CCNGG | 2 cut(s) | 368, 414 |
| MvaI | CCWGG | 2 cut(s) | 368, 414 |
| MvnI | CGCG | 2 cut(s) | 219, 244 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 163, 228 |
| NarI | GGCGCC | 1 cut(s) | 423 |
| NdeII | GATC | 1 cut(s) | 214 |
| NlaIII | CATG | 3 cut(s) | 21, 170, 398 |
| NlaIV | GGNNCC | 1 cut(s) | 424 |
| PkrI | GCNGC | 4 cut(s) | 44, 221, 233, 392 |
| PleI | GAGTC | 1 cut(s) | 173 |
| PluTI | GGCGCC | 1 cut(s) | 426 |
| PpsI | GAGTC | 1 cut(s) | 173 |
| PsiI | TTATAA | 1 cut(s) | 442 |
| Psp6I | CCWGG | 2 cut(s) | 366, 412 |
| PspGI | CCWGG | 2 cut(s) | 366, 412 |
| PspN4I | GGNNCC | 1 cut(s) | 424 |
| PspPI | GGNCC | 1 cut(s) | 353 |
| RsaI | GTAC | 1 cut(s) | 436 |
| RsaNI | GTAC | 1 cut(s) | 435 |
| SacII | CCGCGG | 1 cut(s) | 245 |
| SatI | GCNGC | 4 cut(s) | 43, 220, 232, 391 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| Sau96I | GGNCC | 1 cut(s) | 353 |
| SchI | GAGTC | 1 cut(s) | 173 |
| ScrFI | CCNGG | 2 cut(s) | 368, 414 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SetI | ASST | 2 cut(s) | 80, 236 |
| SfoI | GGCGCC | 1 cut(s) | 424 |
| Sfr303I | CCGCGG | 1 cut(s) | 245 |
| SgrBI | CCGCGG | 1 cut(s) | 245 |
| SinI | GGWCC | 1 cut(s) | 353 |
| Sse9I | AATT | 2 cut(s) | 173, 210 |
| SsiI | CCGC | 4 cut(s) | 219, 242, 244, 391 |
| SspDI | GGCGCC | 1 cut(s) | 422 |
| StyD4I | CCNGG | 2 cut(s) | 366, 412 |
| StyI | CCWWGG | 1 cut(s) | 356 |
| TaaI | ACNGT | 1 cut(s) | 434 |
| TaqI | TCGA | 2 cut(s) | 147, 177 |
| TasI | AATT | 2 cut(s) | 173, 210 |
| TauI | GCSGC | 2 cut(s) | 222, 393 |
| TscAI | CASTG | 2 cut(s) | 286, 355 |
| TseI | GCWGC | 2 cut(s) | 42, 231 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| TspRI | CASTG | 2 cut(s) | 286, 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 353 |