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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 289 |
| AccBSI | CCGCTC | 2 cut(s) | 311, 440 |
| AccII | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| AciI | CCGC | 5 cut(s) | 194, 212, 309, 330, 440 |
| AclWI | GGATC | 2 cut(s) | 337, 385 |
| AcoI | YGGCCR | 1 cut(s) | 294 |
| AcyI | GRCGYC | 1 cut(s) | 598 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 11, 187, 255, 299, 315, 394, 501 |
| AgsI | TTSAA | 2 cut(s) | 431, 509 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 602 |
| AjiI | CACGTC | 1 cut(s) | 604 |
| AjnI | CCWGG | 2 cut(s) | 475, 494 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 96, 128 |
| AluBI | AGCT | 4 cut(s) | 82, 135, 417, 452 |
| AluI | AGCT | 4 cut(s) | 82, 135, 417, 452 |
| Alw21I | GWGCWC | 2 cut(s) | 84, 614 |
| AlwI | GGATC | 2 cut(s) | 337, 385 |
| Ama87I | CYCGRG | 3 cut(s) | 222, 251, 461 |
| AoxI | GGCC | 5 cut(s) | 280, 294, 318, 384, 492 |
| ApaI | GGGCCC | 1 cut(s) | 322 |
| AspLEI | GCGC | 5 cut(s) | 205, 328, 458, 460, 546 |
| AspS9I | GGNCC | 6 cut(s) | 14, 258, 281, 318, 319, 385 |
| AsuC2I | CCSGG | 2 cut(s) | 395, 541 |
| AsuHPI | GGTGA | 1 cut(s) | 612 |
| AvaI | CYCGRG | 3 cut(s) | 222, 251, 461 |
| AvaII | GGWCC | 2 cut(s) | 14, 258 |
| BaeGI | GKGCMC | 1 cut(s) | 322 |
| BanI | GGYRCC | 1 cut(s) | 289 |
| BanII | GRGCYC | 6 cut(s) | 84, 211, 223, 249, 322, 559 |
| BauI | CACGAG | 1 cut(s) | 88 |
| Bbv12I | GWGCWC | 2 cut(s) | 84, 614 |
| BccI | CCATC | 2 cut(s) | 4, 494 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 121, 155, 358, 379, 392, 413 |
| BciT130I | CCWGG | 2 cut(s) | 477, 496 |
| BcnI | CCSGG | 2 cut(s) | 395, 541 |
| BfaI | CTAG | 3 cut(s) | 273, 449, 560 |
| BfoI | RGCGCY | 1 cut(s) | 329 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 477, 496, 541 |
| Bme18I | GGWCC | 2 cut(s) | 14, 258 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 602 |
| BmeT110I | CYCGRG | 3 cut(s) | 222, 251, 461 |
| BmgBI | CACGTC | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 6 cut(s) | 14, 258, 281, 318, 319, 385 |
| BmiI | GGNNCC | 7 cut(s) | 15, 65, 192, 283, 291, 320, 387 |
| BmrFI | CCNGG | 4 cut(s) | 395, 477, 496, 541 |
| BmsI | GCATC | 3 cut(s) | 102, 147, 555 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| BpmI | CTGGAG | 1 cut(s) | 459 |
| BpuEI | CTTGAG | 1 cut(s) | 247 |
| BpuMI | CCSGG | 2 cut(s) | 395, 541 |
| BsaHI | GRCGYC | 1 cut(s) | 598 |
| BsaJI | CCNNGG | 7 cut(s) | 5, 285, 314, 495, 592, 623, 638 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 11, 187, 255, 299, 315, 394, 501 |
| Bse118I | RCCGGY | 4 cut(s) | 199, 292, 332, 359 |
| BseBI | CCWGG | 2 cut(s) | 477, 496 |
| BseDI | CCNNGG | 7 cut(s) | 5, 285, 314, 495, 592, 623, 638 |
| BseGI | GGATG | 3 cut(s) | 15, 493, 505 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 11, 187, 255, 299, 315, 394, 501 |
| BsePI | GCGCGC | 1 cut(s) | 456 |
| BseRI | GAGGAG | 2 cut(s) | 344, 462 |
| BseSI | GKGCMC | 1 cut(s) | 322 |
| BseX3I | CGGCCG | 1 cut(s) | 294 |
| BsgI | GTGCAG | 1 cut(s) | 419 |
| Bsh1236I | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| Bsh1285I | CGRYCG | 2 cut(s) | 297, 553 |
| BshFI | GGCC | 5 cut(s) | 282, 296, 320, 386, 494 |
| BshNI | GGYRCC | 1 cut(s) | 289 |
| BsiEI | CGRYCG | 2 cut(s) | 297, 553 |
| BsiHKAI | GWGCWC | 2 cut(s) | 84, 614 |
| BsiHKCI | CYCGRG | 3 cut(s) | 222, 251, 461 |
| BsiSI | CCGG | 7 cut(s) | 61, 200, 293, 333, 360, 395, 541 |
| BslFI | GGGAC | 2 cut(s) | 27, 507 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 11, 187, 255, 299, 315, 394, 501 |
| BsmFI | GGGAC | 2 cut(s) | 27, 507 |
| BsnI | GGCC | 5 cut(s) | 282, 296, 320, 386, 494 |
| BsoBI | CYCGRG | 3 cut(s) | 222, 251, 461 |
| Bsp120I | GGGCCC | 1 cut(s) | 318 |
| Bsp1286I | GDGCHC | 7 cut(s) | 84, 211, 223, 249, 322, 559, 614 |
| Bsp143I | GATC | 3 cut(s) | 342, 390, 402 |
| Bsp68I | TCGCGA | 2 cut(s) | 243, 608 |
| BspACI | CCGC | 5 cut(s) | 194, 212, 309, 330, 440 |
| BspANI | GGCC | 5 cut(s) | 282, 296, 320, 386, 494 |
| BspFNI | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| BspLI | GGNNCC | 7 cut(s) | 15, 65, 192, 283, 291, 320, 387 |
| BspPI | GGATC | 2 cut(s) | 337, 385 |
| BspQI | GCTCTTC | 1 cut(s) | 89 |
| BspT107I | GGYRCC | 1 cut(s) | 289 |
| BsrBI | CCGCTC | 2 cut(s) | 311, 440 |
| BsrFI | RCCGGY | 4 cut(s) | 199, 292, 332, 359 |
| BssAI | RCCGGY | 4 cut(s) | 199, 292, 332, 359 |
| BssECI | CCNNGG | 7 cut(s) | 5, 285, 314, 495, 592, 623, 638 |
| BssHII | GCGCGC | 1 cut(s) | 456 |
| BssMI | GATC | 3 cut(s) | 342, 390, 402 |
| BssNI | GRCGYC | 1 cut(s) | 598 |
| BssSI | CACGAG | 1 cut(s) | 88 |
| Bst2BI | CACGAG | 1 cut(s) | 88 |
| Bst2UI | CCWGG | 2 cut(s) | 477, 496 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| Bst6I | CTCTTC | 4 cut(s) | 89, 182, 426, 569 |
| BstACI | GRCGYC | 1 cut(s) | 598 |
| BstDSI | CCRYGG | 2 cut(s) | 5, 314 |
| BstF5I | GGATG | 3 cut(s) | 15, 493, 505 |
| BstFNI | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| BstH2I | RGCGCY | 1 cut(s) | 329 |
| BstHHI | GCGC | 5 cut(s) | 205, 328, 458, 460, 546 |
| BstKTI | GATC | 3 cut(s) | 345, 393, 405 |
| BstMBI | GATC | 3 cut(s) | 342, 390, 402 |
| BstMCI | CGRYCG | 2 cut(s) | 297, 553 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 202, 211, 317, 365 |
| BstNI | CCWGG | 2 cut(s) | 477, 496 |
| BstNSI | RCATGY | 1 cut(s) | 379 |
| BstSCI | CCNGG | 4 cut(s) | 393, 475, 494, 539 |
| BstSLI | GKGCMC | 1 cut(s) | 322 |
| BstUI | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| BstZI | CGGCCG | 1 cut(s) | 294 |
| BsuRI | GGCC | 5 cut(s) | 282, 296, 320, 386, 494 |
| BtgI | CCRYGG | 2 cut(s) | 5, 314 |
| BtrI | CACGTC | 1 cut(s) | 604 |
| BtsCI | GGATG | 3 cut(s) | 15, 493, 505 |
| BtuMI | TCGCGA | 2 cut(s) | 243, 608 |
| CfoI | GCGC | 5 cut(s) | 205, 328, 458, 460, 546 |
| Cfr10I | RCCGGY | 4 cut(s) | 199, 292, 332, 359 |
| Cfr13I | GGNCC | 6 cut(s) | 14, 258, 281, 318, 319, 385 |
| CseI | GACGC | 1 cut(s) | 606 |
| CviAII | CATG | 1 cut(s) | 376 |
| DpnI | GATC | 3 cut(s) | 344, 392, 404 |
| DpnII | GATC | 3 cut(s) | 342, 390, 402 |
| DriI | GACNNNNNGTC | 1 cut(s) | 602 |
| EaeI | YGGCCR | 1 cut(s) | 294 |
| EagI | CGGCCG | 1 cut(s) | 294 |
| Eam1104I | CTCTTC | 4 cut(s) | 89, 182, 426, 569 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 602 |
| EarI | CTCTTC | 4 cut(s) | 89, 182, 426, 569 |
| Ecl136II | GAGCTC | 1 cut(s) | 82 |
| EclXI | CGGCCG | 1 cut(s) | 294 |
| Eco24I | GRGCYC | 6 cut(s) | 84, 211, 223, 249, 322, 559 |
| Eco32I | GATATC | 1 cut(s) | 529 |
| Eco47I | GGWCC | 2 cut(s) | 14, 258 |
| Eco52I | CGGCCG | 1 cut(s) | 294 |
| Eco53kI | GAGCTC | 1 cut(s) | 82 |
| Eco88I | CYCGRG | 3 cut(s) | 222, 251, 461 |
| EcoICRI | GAGCTC | 1 cut(s) | 82 |
| EcoO109I | RGGNCCY | 2 cut(s) | 258, 281 |
| EcoRII | CCWGG | 2 cut(s) | 475, 494 |
| EcoRV | GATATC | 1 cut(s) | 529 |
| EcoT38I | GRGCYC | 6 cut(s) | 84, 211, 223, 249, 322, 559 |
| FaeI | CATG | 1 cut(s) | 379 |
| FaiI | YATR | 6 cut(s) | 29, 75, 119, 305, 377, 407 |
| FaqI | GGGAC | 2 cut(s) | 27, 507 |
| FatI | CATG | 1 cut(s) | 375 |
| FauI | CCCGC | 2 cut(s) | 219, 337 |
| FokI | GGATG | 3 cut(s) | 22, 500, 512 |
| FriOI | GRGCYC | 6 cut(s) | 84, 211, 223, 249, 322, 559 |
| FspBI | CTAG | 3 cut(s) | 273, 449, 560 |
| GlaI | GCGC | 5 cut(s) | 204, 327, 457, 459, 545 |
| GsuI | CTGGAG | 1 cut(s) | 459 |
| HaeII | RGCGCY | 1 cut(s) | 329 |
| HaeIII | GGCC | 5 cut(s) | 282, 296, 320, 386, 494 |
| HapII | CCGG | 7 cut(s) | 61, 200, 293, 333, 360, 395, 541 |
| HgaI | GACGC | 1 cut(s) | 606 |
| HhaI | GCGC | 5 cut(s) | 205, 328, 458, 460, 546 |
| Hin1I | GRCGYC | 1 cut(s) | 598 |
| Hin1II | CATG | 1 cut(s) | 379 |
| Hin6I | GCGC | 5 cut(s) | 203, 326, 456, 458, 544 |
| HinP1I | GCGC | 5 cut(s) | 203, 326, 456, 458, 544 |
| HinfI | GANTC | 2 cut(s) | 185, 520 |
| HpaII | CCGG | 7 cut(s) | 61, 200, 293, 333, 360, 395, 541 |
| HphI | GGTGA | 1 cut(s) | 612 |
| Hpy188III | TCNNGA | 6 cut(s) | 88, 242, 253, 524, 560, 607 |
| Hpy99I | CGWCG | 2 cut(s) | 219, 608 |
| HpyAV | CCTTC | 3 cut(s) | 16, 272, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyCH4IV | ACGT | 2 cut(s) | 511, 603 |
| HpyCH4V | TGCA | 2 cut(s) | 379, 400 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 202, 211, 317, 365 |
| HpySE526I | ACGT | 2 cut(s) | 511, 603 |
| Hsp92I | GRCGYC | 1 cut(s) | 598 |
| Hsp92II | CATG | 1 cut(s) | 379 |
| HspAI | GCGC | 5 cut(s) | 203, 326, 456, 458, 544 |
| KroI | GCCGGC | 2 cut(s) | 292, 332 |
| KroNI | GCCGGC | 2 cut(s) | 294, 334 |
| Kzo9I | GATC | 3 cut(s) | 342, 390, 402 |
| LguI | GCTCTTC | 1 cut(s) | 89 |
| LmnI | GCTCC | 2 cut(s) | 196, 316 |
| LweI | GCATC | 3 cut(s) | 102, 147, 555 |
| MaeI | CTAG | 3 cut(s) | 273, 449, 560 |
| MaeII | ACGT | 2 cut(s) | 511, 603 |
| MaeIII | GTNAC | 2 cut(s) | 466, 578 |
| MalI | GATC | 3 cut(s) | 344, 392, 404 |
| MbiI | CCGCTC | 2 cut(s) | 311, 440 |
| MboI | GATC | 3 cut(s) | 342, 390, 402 |
| MboII | GAAGA | 6 cut(s) | 31, 76, 166, 169, 443, 586 |
| MfeI | CAATTG | 2 cut(s) | 55, 380 |
| MhlI | GDGCHC | 7 cut(s) | 84, 211, 223, 249, 322, 559, 614 |
| MluCI | AATT | 3 cut(s) | 55, 237, 380 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MroNI | GCCGGC | 2 cut(s) | 292, 332 |
| MspI | CCGG | 7 cut(s) | 61, 200, 293, 333, 360, 395, 541 |
| MspR9I | CCNGG | 4 cut(s) | 395, 477, 496, 541 |
| MunI | CAATTG | 2 cut(s) | 55, 380 |
| MvaI | CCWGG | 2 cut(s) | 477, 496 |
| MvnI | CGCG | 6 cut(s) | 205, 214, 243, 456, 458, 608 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 202, 211, 317, 365 |
| NaeI | GCCGGC | 2 cut(s) | 294, 334 |
| NciI | CCSGG | 2 cut(s) | 395, 541 |
| NdeII | GATC | 3 cut(s) | 342, 390, 402 |
| NgoMIV | GCCGGC | 2 cut(s) | 292, 332 |
| NlaIII | CATG | 1 cut(s) | 379 |
| NlaIV | GGNNCC | 7 cut(s) | 15, 65, 192, 283, 291, 320, 387 |
| NruI | TCGCGA | 2 cut(s) | 243, 608 |
| NspI | RCATGY | 1 cut(s) | 379 |
| PaeR7I | CTCGAG | 2 cut(s) | 251, 461 |
| PauI | GCGCGC | 1 cut(s) | 456 |
| PciSI | GCTCTTC | 1 cut(s) | 89 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 620, 635 |
| PdiI | GCCGGC | 2 cut(s) | 294, 334 |
| PfeI | GAWTC | 1 cut(s) | 185 |
| PfoI | TCCNGGA | 1 cut(s) | 475 |
| PleI | GAGTC | 1 cut(s) | 528 |
| PpsI | GAGTC | 1 cut(s) | 528 |
| PpuMI | RGGWCCY | 1 cut(s) | 258 |
| Psp124BI | GAGCTC | 1 cut(s) | 84 |
| Psp5II | RGGWCCY | 1 cut(s) | 258 |
| Psp6I | CCWGG | 2 cut(s) | 475, 494 |
| PspGI | CCWGG | 2 cut(s) | 475, 494 |
| PspN4I | GGNNCC | 7 cut(s) | 15, 65, 192, 283, 291, 320, 387 |
| PspOMI | GGGCCC | 1 cut(s) | 318 |
| PspPI | GGNCC | 6 cut(s) | 14, 258, 281, 318, 319, 385 |
| PspPPI | RGGWCCY | 1 cut(s) | 258 |
| PspXI | VCTCGAGB | 1 cut(s) | 461 |
| PteI | GCGCGC | 1 cut(s) | 456 |
| RruI | TCGCGA | 2 cut(s) | 243, 608 |
| SacI | GAGCTC | 1 cut(s) | 84 |
| SapI | GCTCTTC | 1 cut(s) | 89 |
| Sau3AI | GATC | 3 cut(s) | 342, 390, 402 |
| Sau96I | GGNCC | 6 cut(s) | 14, 258, 281, 318, 319, 385 |
| SchI | GAGTC | 1 cut(s) | 529 |
| ScrFI | CCNGG | 4 cut(s) | 395, 477, 496, 541 |
| SduI | GDGCHC | 7 cut(s) | 84, 211, 223, 249, 322, 559, 614 |
| SfaNI | GCATC | 3 cut(s) | 102, 147, 555 |
| Sfr274I | CTCGAG | 2 cut(s) | 251, 461 |
| SgrAI | CRCCGGYG | 1 cut(s) | 359 |
| SinI | GGWCC | 2 cut(s) | 14, 258 |
| SlaI | CTCGAG | 2 cut(s) | 251, 461 |
| SmlI | CTYRAG | 3 cut(s) | 251, 262, 461 |
| SmoI | CTYRAG | 3 cut(s) | 251, 262, 461 |
| Sse9I | AATT | 3 cut(s) | 55, 237, 380 |
| SsiI | CCGC | 5 cut(s) | 194, 212, 309, 330, 440 |
| SspMI | CTAG | 3 cut(s) | 273, 449, 560 |
| SstI | GAGCTC | 1 cut(s) | 84 |
| StyD4I | CCNGG | 4 cut(s) | 393, 475, 494, 539 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaiI | ACGT | 2 cut(s) | 514, 606 |
| TaqI | TCGA | 4 cut(s) | 131, 252, 338, 462 |
| TaqII | GACCGA | 2 cut(s) | 31, 539 |
| TasI | AATT | 3 cut(s) | 55, 237, 380 |
| TfiI | GAWTC | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 258 |
| XbaI | TCTAGA | 1 cut(s) | 559 |
| XceI | RCATGY | 1 cut(s) | 379 |
| XhoI | CTCGAG | 2 cut(s) | 251, 461 |
| XspI | CTAG | 3 cut(s) | 273, 449, 560 |