Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| Acc65I | GGTACC | 1 cut(s) | 83 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 269 |
| AccBSI | CCGCTC | 1 cut(s) | 442 |
| AccI | GTMKAC | 1 cut(s) | 220 |
| AccII | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| AcoI | YGGCCR | 4 cut(s) | 183, 302, 574, 780 |
| AcsI | RAATTY | 1 cut(s) | 722 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfaI | GTAC | 3 cut(s) | 85, 710, 760 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 156, 293, 294, 425, 554 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AjnI | CCWGG | 2 cut(s) | 247, 702 |
| AluBI | AGCT | 1 cut(s) | 264 |
| AluI | AGCT | 1 cut(s) | 264 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| Ama87I | CYCGRG | 1 cut(s) | 796 |
| AoxI | GGCC | 7 cut(s) | 183, 205, 302, 447, 574, 609, 780 |
| ApeKI | GCWGC | 2 cut(s) | 377, 624 |
| ApoI | RAATTY | 1 cut(s) | 722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| Asp718I | GGTACC | 1 cut(s) | 83 |
| AspLEI | GCGC | 2 cut(s) | 355, 629 |
| AspS9I | GGNCC | 1 cut(s) | 610 |
| AsuC2I | CCSGG | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 3 cut(s) | 505, 529, 589 |
| AsuNHI | GCTAGC | 1 cut(s) | 655 |
| AvaI | CYCGRG | 1 cut(s) | 796 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 2 cut(s) | 83, 269 |
| BbvI | GCAGC | 2 cut(s) | 389, 636 |
| BccI | CCATC | 9 cut(s) | 116, 120, 200, 288, 320, 420, 542, 548, 645 |
| BceAI | ACGGC | 3 cut(s) | 220, 289, 795 |
| BciT130I | CCWGG | 2 cut(s) | 249, 704 |
| BcnI | CCSGG | 1 cut(s) | 671 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 3 cut(s) | 161, 362, 656 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 6 cut(s) | 378, 427, 440, 447, 625, 783 |
| BlsI | GCNGC | 6 cut(s) | 379, 428, 441, 448, 626, 784 |
| BmcAI | AGTACT | 1 cut(s) | 710 |
| Bme1390I | CCNGG | 3 cut(s) | 249, 671, 704 |
| BmeT110I | CYCGRG | 1 cut(s) | 796 |
| BmgT120I | GGNCC | 1 cut(s) | 610 |
| BmiI | GGNNCC | 4 cut(s) | 6, 73, 85, 271 |
| BmrFI | CCNGG | 3 cut(s) | 249, 671, 704 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 163, 519 |
| BmtI | GCTAGC | 1 cut(s) | 659 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 2 cut(s) | 270, 725 |
| BpuMI | CCSGG | 1 cut(s) | 671 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 66, 67, 156, 293, 294, 425, 554 |
| Bse118I | RCCGGY | 2 cut(s) | 539, 686 |
| Bse1I | ACTGG | 4 cut(s) | 159, 230, 716, 809 |
| BseBI | CCWGG | 2 cut(s) | 249, 704 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 1 cut(s) | 108 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 156, 293, 294, 425, 554 |
| BseNI | ACTGG | 4 cut(s) | 159, 230, 716, 809 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 780 |
| BseXI | GCAGC | 2 cut(s) | 389, 636 |
| BseYI | CCCAGC | 3 cut(s) | 264, 319, 612 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| Bsh1285I | CGRYCG | 4 cut(s) | 186, 622, 687, 783 |
| BshFI | GGCC | 7 cut(s) | 185, 207, 304, 449, 576, 611, 782 |
| BshNI | GGYRCC | 2 cut(s) | 83, 269 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 4 cut(s) | 186, 622, 687, 783 |
| BsiHKCI | CYCGRG | 1 cut(s) | 796 |
| BsiSI | CCGG | 5 cut(s) | 150, 182, 540, 670, 687 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 156, 293, 294, 425, 554 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsmI | GAATGC | 2 cut(s) | 90, 379 |
| BsnI | GGCC | 7 cut(s) | 185, 207, 304, 449, 576, 611, 782 |
| BsoBI | CYCGRG | 1 cut(s) | 796 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 4 cut(s) | 28, 54, 358, 400 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspANI | GGCC | 7 cut(s) | 185, 207, 304, 449, 576, 611, 782 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| BspLI | GGNNCC | 4 cut(s) | 6, 73, 85, 271 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspOI | GCTAGC | 1 cut(s) | 659 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 269 |
| BsrBI | CCGCTC | 1 cut(s) | 442 |
| BsrFI | RCCGGY | 2 cut(s) | 539, 686 |
| BsrI | ACTGG | 4 cut(s) | 159, 230, 716, 809 |
| BssAI | RCCGGY | 2 cut(s) | 539, 686 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 4 cut(s) | 28, 54, 358, 400 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 2 cut(s) | 249, 704 |
| Bst4CI | ACNGT | 2 cut(s) | 620, 635 |
| Bst6I | CTCTTC | 3 cut(s) | 33, 745, 774 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 6 cut(s) | 351, 437, 444, 545, 657, 749 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 1 cut(s) | 108 |
| BstFNI | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 2 cut(s) | 355, 629 |
| BstKTI | GATC | 4 cut(s) | 31, 57, 361, 403 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 4 cut(s) | 28, 54, 358, 400 |
| BstMCI | CGRYCG | 4 cut(s) | 186, 622, 687, 783 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 182, 432, 782 |
| BstNI | CCWGG | 2 cut(s) | 249, 704 |
| BstSCI | CCNGG | 3 cut(s) | 247, 669, 702 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstUI | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| BstV1I | GCAGC | 2 cut(s) | 389, 636 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BstZI | CGGCCG | 2 cut(s) | 183, 780 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 7 cut(s) | 185, 207, 304, 449, 576, 611, 782 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 2 cut(s) | 178, 664 |
| BtsCI | GGATG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 1 cut(s) | 640 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 6 cut(s) | 351, 437, 444, 545, 657, 749 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| CfoI | GCGC | 2 cut(s) | 355, 629 |
| Cfr10I | RCCGGY | 2 cut(s) | 539, 686 |
| Cfr13I | GGNCC | 1 cut(s) | 610 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 84, 709, 759 |
| CviAII | CATG | 2 cut(s) | 572, 607 |
| CviQI | GTAC | 3 cut(s) | 84, 709, 759 |
| DpnI | GATC | 4 cut(s) | 30, 56, 360, 402 |
| DpnII | GATC | 4 cut(s) | 28, 54, 358, 400 |
| EaeI | YGGCCR | 4 cut(s) | 183, 302, 574, 780 |
| EagI | CGGCCG | 2 cut(s) | 183, 780 |
| Eam1104I | CTCTTC | 3 cut(s) | 33, 745, 774 |
| EarI | CTCTTC | 3 cut(s) | 33, 745, 774 |
| EciI | GGCGGA | 1 cut(s) | 705 |
| EclXI | CGGCCG | 2 cut(s) | 183, 780 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 780 |
| Eco88I | CYCGRG | 1 cut(s) | 796 |
| EcoRII | CCWGG | 2 cut(s) | 247, 702 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 2 cut(s) | 575, 610 |
| FaiI | YATR | 6 cut(s) | 63, 393, 406, 573, 608, 666 |
| FatI | CATG | 2 cut(s) | 571, 606 |
| FauI | CCCGC | 3 cut(s) | 95, 342, 654 |
| FblI | GTMKAC | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 6 cut(s) | 378, 427, 440, 447, 625, 783 |
| FokI | GGATG | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 6 cut(s) | 378, 427, 440, 447, 625, 783 |
| FspBI | CTAG | 3 cut(s) | 161, 362, 656 |
| GlaI | GCGC | 2 cut(s) | 354, 628 |
| GluI | GCNGC | 6 cut(s) | 378, 427, 440, 447, 625, 783 |
| GsaI | CCCAGC | 3 cut(s) | 268, 323, 616 |
| GsuI | CTGGAG | 2 cut(s) | 270, 725 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HaeIII | GGCC | 7 cut(s) | 185, 207, 304, 449, 576, 611, 782 |
| HapII | CCGG | 5 cut(s) | 150, 182, 540, 670, 687 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 355, 629 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 2 cut(s) | 575, 610 |
| Hin6I | GCGC | 2 cut(s) | 353, 627 |
| HinP1I | GCGC | 2 cut(s) | 353, 627 |
| HincII | GTYRAC | 2 cut(s) | 221, 592 |
| HindII | GTYRAC | 2 cut(s) | 221, 592 |
| HinfI | GANTC | 6 cut(s) | 132, 244, 495, 584, 693, 766 |
| HpaII | CCGG | 5 cut(s) | 150, 182, 540, 670, 687 |
| HphI | GGTGA | 3 cut(s) | 505, 529, 589 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 592 |
| Hpy188I | TCNGA | 2 cut(s) | 139, 239 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 341, 463, 798 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 592 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 222, 781 |
| HpyAV | CCTTC | 2 cut(s) | 137, 234 |
| HpyCH4III | ACNGT | 2 cut(s) | 620, 635 |
| HpyCH4IV | ACGT | 1 cut(s) | 788 |
| HpyCH4V | TGCA | 4 cut(s) | 377, 720, 735, 747 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 182, 432, 782 |
| HpySE526I | ACGT | 1 cut(s) | 788 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 575, 610 |
| HspAI | GCGC | 2 cut(s) | 353, 627 |
| KpnI | GGTACC | 1 cut(s) | 87 |
| Kzo9I | GATC | 4 cut(s) | 28, 54, 358, 400 |
| LmnI | GCTCC | 2 cut(s) | 10, 129 |
| Lsp1109I | GCAGC | 2 cut(s) | 389, 636 |
| LweI | GCATC | 2 cut(s) | 163, 519 |
| MaeI | CTAG | 3 cut(s) | 161, 362, 656 |
| MaeII | ACGT | 1 cut(s) | 788 |
| MalI | GATC | 4 cut(s) | 30, 56, 360, 402 |
| MbiI | CCGCTC | 1 cut(s) | 442 |
| MboI | GATC | 4 cut(s) | 28, 54, 358, 400 |
| MboII | GAAGA | 5 cut(s) | 25, 50, 407, 732, 761 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 2 cut(s) | 578, 722 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| MlyI | GAGTC | 2 cut(s) | 238, 760 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 5 cut(s) | 28, 245, 319, 610, 748 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspI | CCGG | 5 cut(s) | 150, 182, 540, 670, 687 |
| MspR9I | CCNGG | 3 cut(s) | 249, 671, 704 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 379 |
| MvaI | CCWGG | 2 cut(s) | 249, 704 |
| MvnI | CGCG | 6 cut(s) | 342, 355, 421, 446, 649, 683 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 182, 432, 782 |
| NciI | CCSGG | 1 cut(s) | 671 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 4 cut(s) | 28, 54, 358, 400 |
| NheI | GCTAGC | 1 cut(s) | 655 |
| NlaIII | CATG | 2 cut(s) | 575, 610 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 73, 85, 271 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 210, 785 |
| PctI | GAATGC | 2 cut(s) | 90, 379 |
| PfeI | GAWTC | 4 cut(s) | 132, 495, 584, 693 |
| PfoI | TCCNGGA | 3 cut(s) | 247, 669, 702 |
| PkrI | GCNGC | 6 cut(s) | 379, 428, 441, 448, 626, 784 |
| PleI | GAGTC | 2 cut(s) | 238, 760 |
| PpsI | GAGTC | 2 cut(s) | 238, 760 |
| Psp6I | CCWGG | 2 cut(s) | 247, 702 |
| PspFI | CCCAGC | 3 cut(s) | 264, 319, 612 |
| PspGI | CCWGG | 2 cut(s) | 247, 702 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 73, 85, 271 |
| PspPI | GGNCC | 1 cut(s) | 610 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 552, 584 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 85, 710, 760 |
| RsaNI | GTAC | 3 cut(s) | 84, 709, 759 |
| SalI | GTCGAC | 1 cut(s) | 219 |
| SatI | GCNGC | 6 cut(s) | 378, 427, 440, 447, 625, 783 |
| Sau3AI | GATC | 4 cut(s) | 28, 54, 358, 400 |
| Sau96I | GGNCC | 1 cut(s) | 610 |
| ScaI | AGTACT | 1 cut(s) | 710 |
| SchI | GAGTC | 2 cut(s) | 238, 760 |
| ScrFI | CCNGG | 3 cut(s) | 249, 671, 704 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 6 cut(s) | 266, 385, 602, 740, 760, 791 |
| SfaNI | GCATC | 2 cut(s) | 163, 519 |
| Sse9I | AATT | 2 cut(s) | 578, 722 |
| SspMI | CTAG | 3 cut(s) | 161, 362, 656 |
| StyD4I | CCNGG | 3 cut(s) | 247, 669, 702 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 2 cut(s) | 620, 635 |
| TaiI | ACGT | 1 cut(s) | 791 |
| TaqI | TCGA | 6 cut(s) | 27, 115, 130, 220, 283, 582 |
| TaqII | GACCGA | 1 cut(s) | 488 |
| TasI | AATT | 2 cut(s) | 578, 722 |
| TatI | WGTACW | 1 cut(s) | 708 |
| TauI | GCSGC | 4 cut(s) | 429, 442, 449, 785 |
| TfiI | GAWTC | 4 cut(s) | 132, 495, 584, 693 |
| TscAI | CASTG | 1 cut(s) | 640 |
| TseI | GCWGC | 2 cut(s) | 377, 624 |
| TspGWI | ACGGA | 1 cut(s) | 206 |
| TspRI | CASTG | 1 cut(s) | 640 |
| XapI | RAATTY | 1 cut(s) | 722 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XmiI | GTMKAC | 1 cut(s) | 220 |
| XspI | CTAG | 3 cut(s) | 161, 362, 656 |
| ZrmI | AGTACT | 1 cut(s) | 710 |