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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1306 |
| Acc16I | TGCGCA | 1 cut(s) | 1227 |
| Acc36I | ACCTGC | 1 cut(s) | 1306 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 191, 808 |
| AccBSI | CCGCTC | 1 cut(s) | 1107 |
| AccII | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| AccIII | TCCGGA | 1 cut(s) | 882 |
| AclWI | GGATC | 5 cut(s) | 350, 460, 872, 1280, 1293 |
| AcoI | YGGCCR | 1 cut(s) | 134 |
| AcuI | CTGAAG | 5 cut(s) | 81, 119, 285, 887, 1260 |
| AfaI | GTAC | 4 cut(s) | 474, 666, 1153, 1453 |
| AflIII | ACRYGT | 1 cut(s) | 1140 |
| AgeI | ACCGGT | 1 cut(s) | 144 |
| AgsI | TTSAA | 6 cut(s) | 512, 1121, 1149, 1180, 1211, 1221 |
| AjnI | CCWGG | 4 cut(s) | 167, 701, 777, 1407 |
| AluBI | AGCT | 4 cut(s) | 659, 1001, 1007, 1467 |
| AluI | AGCT | 4 cut(s) | 659, 1001, 1007, 1467 |
| Alw26I | GTCTC | 2 cut(s) | 817, 849 |
| AlwI | GGATC | 5 cut(s) | 350, 460, 872, 1280, 1293 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1279 |
| Aor13HI | TCCGGA | 1 cut(s) | 882 |
| AoxI | GGCC | 9 cut(s) | 134, 164, 393, 793, 906, 927, 972, 1335, 1346 |
| ApeKI | GCWGC | 9 cut(s) | 106, 551, 605, 608, 611, 1040, 1264, 1366, 1464 |
| AsiGI | ACCGGT | 1 cut(s) | 144 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| AspLEI | GCGC | 8 cut(s) | 203, 333, 403, 565, 634, 752, 1228, 1255 |
| AspS9I | GGNCC | 6 cut(s) | 165, 394, 793, 907, 928, 1380 |
| AsuC2I | CCSGG | 6 cut(s) | 235, 684, 747, 931, 1378, 1394 |
| AsuHPI | GGTGA | 2 cut(s) | 685, 707 |
| AsuNHI | GCTAGC | 2 cut(s) | 323, 655 |
| AvaII | GGWCC | 1 cut(s) | 1380 |
| BamHI | GGATCC | 1 cut(s) | 1285 |
| BanII | GRGCYC | 1 cut(s) | 156 |
| BauI | CACGAG | 1 cut(s) | 1008 |
| BbvI | GCAGC | 9 cut(s) | 93, 538, 592, 595, 598, 1027, 1276, 1378, 1476 |
| BccI | CCATC | 3 cut(s) | 1196, 1397, 1416 |
| BceAI | ACGGC | 2 cut(s) | 32, 942 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 140, 174, 433, 467 |
| BciT130I | CCWGG | 4 cut(s) | 169, 703, 779, 1409 |
| BcnI | CCSGG | 6 cut(s) | 235, 684, 747, 931, 1378, 1394 |
| BcoDI | GTCTC | 2 cut(s) | 817, 849 |
| BfaI | CTAG | 7 cut(s) | 162, 225, 324, 498, 656, 968, 998 |
| BfmI | CTRYAG | 1 cut(s) | 1364 |
| BfoI | RGCGCY | 3 cut(s) | 404, 566, 1256 |
| BfuAI | ACCTGC | 1 cut(s) | 1306 |
| BglII | AGATCT | 2 cut(s) | 898, 1167 |
| BlpI | GCTNAGC | 1 cut(s) | 555 |
| Bme18I | GGWCC | 1 cut(s) | 1380 |
| BmgT120I | GGNCC | 6 cut(s) | 165, 394, 793, 907, 928, 1380 |
| BmiI | GGNNCC | 8 cut(s) | 261, 412, 576, 588, 600, 948, 1287, 1381 |
| BmrI | ACTGGG | 1 cut(s) | 464 |
| BmsI | GCATC | 5 cut(s) | 34, 93, 761, 1036, 1237 |
| BmtI | GCTAGC | 2 cut(s) | 327, 659 |
| BmuI | ACTGGG | 1 cut(s) | 464 |
| BpmI | CTGGAG | 1 cut(s) | 977 |
| Bpu10I | CCTNAGC | 2 cut(s) | 33, 128 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 555 |
| BpuEI | CTTGAG | 3 cut(s) | 576, 689, 987 |
| BpuMI | CCSGG | 6 cut(s) | 235, 684, 747, 931, 1378, 1394 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 817 |
| BsaJI | CCNNGG | 5 cut(s) | 48, 167, 359, 702, 777 |
| BsaWI | WCCGGW | 3 cut(s) | 144, 882, 1448 |
| Bse118I | RCCGGY | 3 cut(s) | 132, 144, 559 |
| Bse1I | ACTGG | 6 cut(s) | 15, 229, 396, 412, 470, 1050 |
| Bse3DI | GCAATG | 1 cut(s) | 438 |
| BseAI | TCCGGA | 1 cut(s) | 882 |
| BseBI | CCWGG | 4 cut(s) | 169, 703, 779, 1409 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseDI | CCNNGG | 5 cut(s) | 48, 167, 359, 702, 777 |
| BseGI | GGATG | 3 cut(s) | 752, 1389, 1495 |
| BseMI | GCAATG | 1 cut(s) | 438 |
| BseMII | CTCAG | 6 cut(s) | 119, 546, 1004, 1271, 1310, 1488 |
| BseNI | ACTGG | 6 cut(s) | 15, 229, 396, 412, 470, 1050 |
| BseRI | GAGGAG | 4 cut(s) | 113, 669, 805, 1498 |
| BseXI | GCAGC | 9 cut(s) | 93, 538, 592, 595, 598, 1027, 1276, 1378, 1476 |
| BseYI | CCCAGC | 2 cut(s) | 172, 217 |
| Bsh1236I | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| Bsh1285I | CGRYCG | 1 cut(s) | 309 |
| BshFI | GGCC | 9 cut(s) | 136, 166, 395, 795, 908, 929, 974, 1337, 1348 |
| BshTI | ACCGGT | 1 cut(s) | 144 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiEI | CGRYCG | 1 cut(s) | 309 |
| BslFI | GGGAC | 4 cut(s) | 70, 714, 719, 1393 |
| BsmAI | GTCTC | 2 cut(s) | 817, 849 |
| BsmFI | GGGAC | 4 cut(s) | 70, 714, 719, 1393 |
| BsmI | GAATGC | 2 cut(s) | 83, 1175 |
| BsnI | GGCC | 9 cut(s) | 136, 166, 395, 795, 908, 929, 974, 1337, 1348 |
| Bso31I | GGTCTC | 1 cut(s) | 817 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp13I | TCCGGA | 1 cut(s) | 882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 555 |
| Bsp68I | TCGCGA | 1 cut(s) | 540 |
| BspANI | GGCC | 9 cut(s) | 136, 166, 395, 795, 908, 929, 974, 1337, 1348 |
| BspCNI | CTCAG | 6 cut(s) | 120, 547, 1003, 1272, 1309, 1487 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspEI | TCCGGA | 1 cut(s) | 882 |
| BspFNI | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| BspHI | TCATGA | 1 cut(s) | 820 |
| BspLI | GGNNCC | 8 cut(s) | 261, 412, 576, 588, 600, 948, 1287, 1381 |
| BspMAI | CTGCAG | 1 cut(s) | 1368 |
| BspMI | ACCTGC | 1 cut(s) | 1306 |
| BspOI | GCTAGC | 2 cut(s) | 327, 659 |
| BspPI | GGATC | 5 cut(s) | 350, 460, 872, 1280, 1293 |
| BspTNI | GGTCTC | 1 cut(s) | 817 |
| BsrBI | CCGCTC | 1 cut(s) | 1107 |
| BsrDI | GCAATG | 1 cut(s) | 438 |
| BsrFI | RCCGGY | 3 cut(s) | 132, 144, 559 |
| BsrI | ACTGG | 6 cut(s) | 15, 229, 396, 412, 470, 1050 |
| BssAI | RCCGGY | 3 cut(s) | 132, 144, 559 |
| BssECI | CCNNGG | 5 cut(s) | 48, 167, 359, 702, 777 |
| BssSI | CACGAG | 1 cut(s) | 1008 |
| Bst2BI | CACGAG | 1 cut(s) | 1008 |
| Bst2UI | CCWGG | 4 cut(s) | 169, 703, 779, 1409 |
| Bst4CI | ACNGT | 3 cut(s) | 250, 719, 919 |
| Bst6I | CTCTTC | 1 cut(s) | 286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 147 |
| BstDEI | CTNAG | 9 cut(s) | 33, 128, 555, 990, 1098, 1171, 1280, 1296, 1474 |
| BstDSI | CCRYGG | 2 cut(s) | 48, 359 |
| BstEII | GGTNACC | 1 cut(s) | 1109 |
| BstF5I | GGATG | 3 cut(s) | 752, 1389, 1495 |
| BstFNI | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| BstH2I | RGCGCY | 3 cut(s) | 404, 566, 1256 |
| BstHHI | GCGC | 8 cut(s) | 203, 333, 403, 565, 634, 752, 1228, 1255 |
| BstMAI | GTCTC | 2 cut(s) | 817, 849 |
| BstMCI | CGRYCG | 1 cut(s) | 309 |
| BstNI | CCWGG | 4 cut(s) | 169, 703, 779, 1409 |
| BstNSI | RCATGY | 1 cut(s) | 1250 |
| BstPI | GGTNACC | 1 cut(s) | 1109 |
| BstSFI | CTRYAG | 1 cut(s) | 1364 |
| BstUI | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| BstV1I | GCAGC | 9 cut(s) | 93, 538, 592, 595, 598, 1027, 1276, 1378, 1476 |
| BstX2I | RGATCY | 3 cut(s) | 898, 1167, 1285 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 319 |
| BstYI | RGATCY | 3 cut(s) | 898, 1167, 1285 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuRI | GGCC | 9 cut(s) | 136, 166, 395, 795, 908, 929, 974, 1337, 1348 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtgI | CCRYGG | 2 cut(s) | 48, 359 |
| BtgZI | GCGATG | 1 cut(s) | 1435 |
| BtsCI | GGATG | 3 cut(s) | 752, 1389, 1495 |
| BtsI | GCAGTG | 2 cut(s) | 623, 1123 |
| BtsIMutI | CAGTG | 4 cut(s) | 8, 405, 623, 1123 |
| BtuMI | TCGCGA | 1 cut(s) | 540 |
| BveI | ACCTGC | 1 cut(s) | 1306 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1279 |
| CciI | TCATGA | 1 cut(s) | 820 |
| CfoI | GCGC | 8 cut(s) | 203, 333, 403, 565, 634, 752, 1228, 1255 |
| Cfr10I | RCCGGY | 3 cut(s) | 132, 144, 559 |
| Cfr13I | GGNCC | 6 cut(s) | 165, 394, 793, 907, 928, 1380 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| Csp6I | GTAC | 4 cut(s) | 473, 665, 1152, 1452 |
| CspAI | ACCGGT | 1 cut(s) | 144 |
| CviAII | CATG | 4 cut(s) | 821, 868, 935, 1247 |
| CviQI | GTAC | 4 cut(s) | 473, 665, 1152, 1452 |
| DdeI | CTNAG | 9 cut(s) | 33, 128, 555, 990, 1098, 1171, 1280, 1296, 1474 |
| EaeI | YGGCCR | 1 cut(s) | 134 |
| Eam1104I | CTCTTC | 1 cut(s) | 286 |
| EarI | CTCTTC | 1 cut(s) | 286 |
| EciI | GGCGGA | 4 cut(s) | 107, 380, 1043, 1345 |
| Eco147I | AGGCCT | 1 cut(s) | 1348 |
| Eco24I | GRGCYC | 1 cut(s) | 156 |
| Eco31I | GGTCTC | 1 cut(s) | 817 |
| Eco32I | GATATC | 1 cut(s) | 736 |
| Eco47I | GGWCC | 1 cut(s) | 1380 |
| Eco57I | CTGAAG | 5 cut(s) | 81, 119, 285, 887, 1260 |
| Eco91I | GGTNACC | 1 cut(s) | 1109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 793 |
| EcoO65I | GGTNACC | 1 cut(s) | 1109 |
| EcoRII | CCWGG | 4 cut(s) | 167, 701, 777, 1407 |
| EcoRV | GATATC | 1 cut(s) | 736 |
| EcoT38I | GRGCYC | 1 cut(s) | 156 |
| FaeI | CATG | 4 cut(s) | 824, 871, 938, 1250 |
| FaqI | GGGAC | 4 cut(s) | 70, 714, 719, 1393 |
| FatI | CATG | 4 cut(s) | 820, 867, 934, 1246 |
| FauI | CCCGC | 2 cut(s) | 306, 1138 |
| FokI | GGATG | 2 cut(s) | 739, 1376 |
| FriOI | GRGCYC | 1 cut(s) | 156 |
| FspBI | CTAG | 7 cut(s) | 162, 225, 324, 498, 656, 968, 998 |
| FspI | TGCGCA | 1 cut(s) | 1227 |
| GlaI | GCGC | 8 cut(s) | 202, 332, 402, 564, 633, 751, 1227, 1254 |
| GsaI | CCCAGC | 2 cut(s) | 176, 221 |
| GsuI | CTGGAG | 1 cut(s) | 977 |
| HaeII | RGCGCY | 3 cut(s) | 404, 566, 1256 |
| HaeIII | GGCC | 9 cut(s) | 136, 166, 395, 795, 908, 929, 974, 1337, 1348 |
| HhaI | GCGC | 8 cut(s) | 203, 333, 403, 565, 634, 752, 1228, 1255 |
| Hin1II | CATG | 4 cut(s) | 824, 871, 938, 1250 |
| Hin6I | GCGC | 8 cut(s) | 201, 331, 401, 563, 632, 750, 1226, 1253 |
| HinP1I | GCGC | 8 cut(s) | 201, 331, 401, 563, 632, 750, 1226, 1253 |
| HinfI | GANTC | 6 cut(s) | 275, 676, 727, 886, 1276, 1472 |
| HphI | GGTGA | 2 cut(s) | 685, 707 |
| Hpy166II | GTNNAC | 1 cut(s) | 52 |
| Hpy8I | GTNNAC | 1 cut(s) | 52 |
| Hpy99I | CGWCG | 1 cut(s) | 290 |
| HpyCH4III | ACNGT | 3 cut(s) | 250, 719, 919 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 109, 454, 871, 1366 |
| HpyF3I | CTNAG | 9 cut(s) | 33, 128, 555, 990, 1098, 1171, 1280, 1296, 1474 |
| Hsp92II | CATG | 4 cut(s) | 824, 871, 938, 1250 |
| HspAI | GCGC | 8 cut(s) | 201, 331, 401, 563, 632, 750, 1226, 1253 |
| Kpn2I | TCCGGA | 1 cut(s) | 882 |
| KroI | GCCGGC | 2 cut(s) | 132, 559 |
| KroNI | GCCGGC | 2 cut(s) | 134, 561 |
| LmnI | GCTCC | 9 cut(s) | 259, 586, 604, 619, 958, 1030, 1104, 1260, 1312 |
| Lsp1109I | GCAGC | 9 cut(s) | 93, 538, 592, 595, 598, 1027, 1276, 1378, 1476 |
| LweI | GCATC | 5 cut(s) | 34, 93, 761, 1036, 1237 |
| MaeI | CTAG | 7 cut(s) | 162, 225, 324, 498, 656, 968, 998 |
| MaeIII | GTNAC | 3 cut(s) | 673, 922, 1109 |
| MbiI | CCGCTC | 1 cut(s) | 1107 |
| MboII | GAAGA | 8 cut(s) | 74, 112, 273, 284, 380, 893, 1253, 1349 |
| MfeI | CAATTG | 1 cut(s) | 911 |
| MflI | RGATCY | 3 cut(s) | 898, 1167, 1285 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 3 cut(s) | 492, 911, 1180 |
| MluI | ACGCGT | 1 cut(s) | 1140 |
| MlyI | GAGTC | 4 cut(s) | 670, 736, 880, 1466 |
| MmeI | TCCRAC | 2 cut(s) | 309, 1045 |
| MroI | TCCGGA | 1 cut(s) | 882 |
| MroNI | GCCGGC | 2 cut(s) | 132, 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MseI | TTAA | 2 cut(s) | 207, 1082 |
| MspA1I | CMGCKG | 1 cut(s) | 1040 |
| MunI | CAATTG | 1 cut(s) | 911 |
| Mva1269I | GAATGC | 2 cut(s) | 83, 1175 |
| MvaI | CCWGG | 4 cut(s) | 169, 703, 779, 1409 |
| MvnI | CGCG | 6 cut(s) | 201, 203, 540, 663, 1142, 1308 |
| NaeI | GCCGGC | 2 cut(s) | 134, 561 |
| NciI | CCSGG | 6 cut(s) | 235, 684, 747, 931, 1378, 1394 |
| NgoMIV | GCCGGC | 2 cut(s) | 132, 559 |
| NheI | GCTAGC | 2 cut(s) | 323, 655 |
| NlaIII | CATG | 4 cut(s) | 824, 871, 938, 1250 |
| NlaIV | GGNNCC | 8 cut(s) | 261, 412, 576, 588, 600, 948, 1287, 1381 |
| NmuCI | GTSAC | 2 cut(s) | 673, 922 |
| NruI | TCGCGA | 1 cut(s) | 540 |
| NsbI | TGCGCA | 1 cut(s) | 1227 |
| NspI | RCATGY | 1 cut(s) | 1250 |
| PagI | TCATGA | 1 cut(s) | 820 |
| PaqCI | CACCTGC | 1 cut(s) | 1306 |
| PceI | AGGCCT | 1 cut(s) | 1348 |
| PctI | GAATGC | 2 cut(s) | 83, 1175 |
| PdiI | GCCGGC | 2 cut(s) | 134, 561 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 2 cut(s) | 275, 1276 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 191, 808 |
| PfoI | TCCNGGA | 4 cut(s) | 233, 682, 1376, 1392 |
| PinAI | ACCGGT | 1 cut(s) | 144 |
| Ple19I | CGATCG | 1 cut(s) | 309 |
| PleI | GAGTC | 4 cut(s) | 670, 735, 880, 1466 |
| PpsI | GAGTC | 4 cut(s) | 670, 735, 880, 1466 |
| Psp6I | CCWGG | 4 cut(s) | 167, 701, 777, 1407 |
| PspEI | GGTNACC | 1 cut(s) | 1109 |
| PspFI | CCCAGC | 2 cut(s) | 172, 217 |
| PspGI | CCWGG | 4 cut(s) | 167, 701, 777, 1407 |
| PspN4I | GGNNCC | 8 cut(s) | 261, 412, 576, 588, 600, 948, 1287, 1381 |
| PspPI | GGNCC | 6 cut(s) | 165, 394, 793, 907, 928, 1380 |
| PstI | CTGCAG | 1 cut(s) | 1368 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1279 |
| PsuI | RGATCY | 3 cut(s) | 898, 1167, 1285 |
| PvuI | CGATCG | 1 cut(s) | 309 |
| RruI | TCGCGA | 1 cut(s) | 540 |
| RsaI | GTAC | 4 cut(s) | 474, 666, 1153, 1453 |
| RsaNI | GTAC | 4 cut(s) | 473, 665, 1152, 1452 |
| SaqAI | TTAA | 2 cut(s) | 207, 1082 |
| Sau96I | GGNCC | 6 cut(s) | 165, 394, 793, 907, 928, 1380 |
| SchI | GAGTC | 4 cut(s) | 670, 736, 880, 1466 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SfaNI | GCATC | 5 cut(s) | 34, 93, 761, 1036, 1237 |
| SfcI | CTRYAG | 1 cut(s) | 1364 |
| SinI | GGWCC | 1 cut(s) | 1380 |
| SmlI | CTYRAG | 3 cut(s) | 591, 668, 1002 |
| SmoI | CTYRAG | 3 cut(s) | 591, 668, 1002 |
| Sse9I | AATT | 3 cut(s) | 492, 911, 1180 |
| SseBI | AGGCCT | 1 cut(s) | 1348 |
| SspMI | CTAG | 7 cut(s) | 162, 225, 324, 498, 656, 968, 998 |
| StuI | AGGCCT | 1 cut(s) | 1348 |
| TaaI | ACNGT | 3 cut(s) | 250, 719, 919 |
| TaqI | TCGA | 4 cut(s) | 42, 270, 349, 388 |
| TasI | AATT | 3 cut(s) | 492, 911, 1180 |
| TatI | WGTACW | 1 cut(s) | 472 |
| TauI | GCSGC | 3 cut(s) | 974, 1040, 1253 |
| TfiI | GAWTC | 2 cut(s) | 275, 1276 |
| Tru1I | TTAA | 2 cut(s) | 207, 1082 |
| Tru9I | TTAA | 2 cut(s) | 207, 1082 |
| TscAI | CASTG | 4 cut(s) | 15, 412, 630, 1130 |
| TseFI | GTSAC | 2 cut(s) | 673, 922 |
| TseI | GCWGC | 9 cut(s) | 106, 551, 605, 608, 611, 1040, 1264, 1366, 1464 |
| Tsp45I | GTSAC | 2 cut(s) | 673, 922 |
| TspDTI | ATGAA | 3 cut(s) | 387, 711, 1147 |
| TspGWI | ACGGA | 4 cut(s) | 272, 348, 745, 877 |
| TspRI | CASTG | 4 cut(s) | 15, 412, 630, 1130 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 191, 808 |
| VpaK11BI | GGWCC | 1 cut(s) | 1380 |
| XceI | RCATGY | 1 cut(s) | 1250 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 404, 1057 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 7 cut(s) | 162, 225, 324, 498, 656, 968, 998 |