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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| AccII | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| AciI | CCGC | 5 cut(s) | 19, 194, 482, 486, 705 |
| AclWI | GGATC | 4 cut(s) | 48, 462, 597, 639 |
| AcoI | YGGCCR | 2 cut(s) | 483, 660 |
| AcuI | CTGAAG | 2 cut(s) | 438, 620 |
| AfaI | GTAC | 3 cut(s) | 159, 383, 393 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 92, 295, 628 |
| AgsI | TTSAA | 4 cut(s) | 35, 143, 252, 281 |
| AjnI | CCWGG | 4 cut(s) | 108, 292, 333, 662 |
| AluBI | AGCT | 4 cut(s) | 269, 374, 422, 445 |
| AluI | AGCT | 4 cut(s) | 269, 374, 422, 445 |
| Alw26I | GTCTC | 1 cut(s) | 55 |
| AlwI | GGATC | 4 cut(s) | 48, 462, 597, 639 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 188, 448 |
| AoxI | GGCC | 6 cut(s) | 319, 337, 483, 525, 573, 660 |
| ApaI | GGGCCC | 1 cut(s) | 341 |
| ApeKI | GCWGC | 2 cut(s) | 445, 448 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AspLEI | GCGC | 3 cut(s) | 362, 364, 643 |
| AspS9I | GGNCC | 5 cut(s) | 286, 337, 338, 526, 573 |
| AsuHPI | GGTGA | 2 cut(s) | 18, 578 |
| AsuNHI | GCTAGC | 1 cut(s) | 265 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| AxyI | CCTNAGG | 1 cut(s) | 386 |
| BaeGI | GKGCMC | 1 cut(s) | 341 |
| BanII | GRGCYC | 1 cut(s) | 341 |
| BbvI | GCAGC | 2 cut(s) | 432, 435 |
| BccI | CCATC | 3 cut(s) | 83, 419, 618 |
| BceAI | ACGGC | 1 cut(s) | 675 |
| BciT130I | CCWGG | 4 cut(s) | 110, 294, 335, 664 |
| BcoDI | GTCTC | 1 cut(s) | 55 |
| BfaI | CTAG | 6 cut(s) | 57, 257, 266, 312, 501, 701 |
| BfmI | CTRYAG | 2 cut(s) | 219, 449 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 336 |
| BisI | GCNGC | 5 cut(s) | 446, 449, 483, 486, 705 |
| BlsI | GCNGC | 5 cut(s) | 447, 450, 484, 487, 706 |
| Bme1390I | CCNGG | 4 cut(s) | 110, 294, 335, 664 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmgT120I | GGNCC | 5 cut(s) | 286, 337, 338, 526, 573 |
| BmiI | GGNNCC | 6 cut(s) | 114, 198, 288, 339, 409, 681 |
| BmrFI | CCNGG | 4 cut(s) | 110, 294, 335, 664 |
| BmsI | GCATC | 1 cut(s) | 298 |
| BmtI | GCTAGC | 1 cut(s) | 269 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 253, 285 |
| BpmI | CTGGAG | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 2 cut(s) | 293, 334 |
| BsaWI | WCCGGW | 1 cut(s) | 85 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 28 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 92, 295, 628 |
| Bse1I | ACTGG | 2 cut(s) | 616, 693 |
| Bse21I | CCTNAGG | 1 cut(s) | 386 |
| BseBI | CCWGG | 4 cut(s) | 110, 294, 335, 664 |
| BseDI | CCNNGG | 2 cut(s) | 293, 334 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 92, 295, 628 |
| BseMII | CTCAG | 2 cut(s) | 377, 437 |
| BseNI | ACTGG | 2 cut(s) | 616, 693 |
| BsePI | GCGCGC | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 389 |
| BseSI | GKGCMC | 1 cut(s) | 341 |
| BseX3I | CGGCCG | 1 cut(s) | 483 |
| BseXI | GCAGC | 2 cut(s) | 432, 435 |
| BseYI | CCCAGC | 1 cut(s) | 356 |
| Bsh1236I | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| Bsh1285I | CGRYCG | 1 cut(s) | 486 |
| BshFI | GGCC | 6 cut(s) | 321, 339, 485, 527, 575, 662 |
| BsiEI | CGRYCG | 1 cut(s) | 486 |
| BsiSI | CCGG | 2 cut(s) | 86, 176 |
| BslFI | GGGAC | 2 cut(s) | 272, 604 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 92, 295, 628 |
| BsmAI | GTCTC | 1 cut(s) | 55 |
| BsmFI | GGGAC | 2 cut(s) | 272, 604 |
| BsnI | GGCC | 6 cut(s) | 321, 339, 485, 527, 575, 662 |
| Bsp120I | GGGCCC | 1 cut(s) | 337 |
| Bsp1286I | GDGCHC | 1 cut(s) | 341 |
| Bsp143I | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| BspACI | CCGC | 5 cut(s) | 19, 194, 482, 486, 705 |
| BspANI | GGCC | 6 cut(s) | 321, 339, 485, 527, 575, 662 |
| BspCNI | CTCAG | 2 cut(s) | 378, 436 |
| BspFNI | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| BspHI | TCATGA | 1 cut(s) | 163 |
| BspLI | GGNNCC | 6 cut(s) | 114, 198, 288, 339, 409, 681 |
| BspMAI | CTGCAG | 1 cut(s) | 453 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspOI | GCTAGC | 1 cut(s) | 269 |
| BspPI | GGATC | 4 cut(s) | 48, 462, 597, 639 |
| BsrI | ACTGG | 2 cut(s) | 616, 693 |
| BssECI | CCNNGG | 2 cut(s) | 293, 334 |
| BssHII | GCGCGC | 1 cut(s) | 360 |
| BssMI | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| Bst2UI | CCWGG | 4 cut(s) | 110, 294, 335, 664 |
| Bst4CI | ACNGT | 1 cut(s) | 172 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 7 cut(s) | 267, 271, 275, 362, 498, 600, 669 |
| BstDEI | CTNAG | 2 cut(s) | 386, 423 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstFNI | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| BstHHI | GCGC | 3 cut(s) | 362, 364, 643 |
| BstKTI | GATC | 7 cut(s) | 43, 226, 457, 523, 571, 592, 634 |
| BstMAI | GTCTC | 1 cut(s) | 55 |
| BstMBI | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| BstMCI | CGRYCG | 1 cut(s) | 486 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 125, 327, 336, 502, 659, 668 |
| BstNI | CCWGG | 4 cut(s) | 110, 294, 335, 664 |
| BstSCI | CCNGG | 4 cut(s) | 108, 292, 333, 662 |
| BstSFI | CTRYAG | 2 cut(s) | 219, 449 |
| BstSLI | GKGCMC | 1 cut(s) | 341 |
| BstUI | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| BstV1I | GCAGC | 2 cut(s) | 432, 435 |
| BstX2I | RGATCY | 3 cut(s) | 454, 589, 631 |
| BstYI | RGATCY | 3 cut(s) | 454, 589, 631 |
| BstZI | CGGCCG | 1 cut(s) | 483 |
| Bsu36I | CCTNAGG | 1 cut(s) | 386 |
| BsuRI | GGCC | 6 cut(s) | 321, 339, 485, 527, 575, 662 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 2 cut(s) | 177, 414 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 7 cut(s) | 267, 271, 275, 362, 498, 600, 669 |
| CaiI | CAGNNNCTG | 2 cut(s) | 188, 448 |
| CciI | TCATGA | 1 cut(s) | 163 |
| CciNI | GCGGCCGC | 1 cut(s) | 483 |
| CfoI | GCGC | 3 cut(s) | 362, 364, 643 |
| Cfr13I | GGNCC | 5 cut(s) | 286, 337, 338, 526, 573 |
| Csp6I | GTAC | 3 cut(s) | 158, 382, 392 |
| CviAII | CATG | 1 cut(s) | 164 |
| CviQI | GTAC | 3 cut(s) | 158, 382, 392 |
| DdeI | CTNAG | 2 cut(s) | 386, 423 |
| DpnI | GATC | 7 cut(s) | 42, 225, 456, 522, 570, 591, 633 |
| DpnII | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| EaeI | YGGCCR | 2 cut(s) | 483, 660 |
| EagI | CGGCCG | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| EclXI | CGGCCG | 1 cut(s) | 483 |
| Eco147I | AGGCCT | 1 cut(s) | 321 |
| Eco24I | GRGCYC | 1 cut(s) | 341 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco52I | CGGCCG | 1 cut(s) | 483 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 620 |
| Eco81I | CCTNAGG | 1 cut(s) | 386 |
| EcoO109I | RGGNCCY | 2 cut(s) | 338, 526 |
| EcoRII | CCWGG | 4 cut(s) | 108, 292, 333, 662 |
| EcoT38I | GRGCYC | 1 cut(s) | 341 |
| FaeI | CATG | 1 cut(s) | 167 |
| FaiI | YATR | 3 cut(s) | 165, 675, 721 |
| FaqI | GGGAC | 2 cut(s) | 272, 604 |
| FatI | CATG | 1 cut(s) | 163 |
| FauI | CCCGC | 1 cut(s) | 26 |
| Fnu4HI | GCNGC | 5 cut(s) | 446, 449, 483, 486, 705 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 341 |
| Fsp4HI | GCNGC | 5 cut(s) | 446, 449, 483, 486, 705 |
| FspBI | CTAG | 6 cut(s) | 57, 257, 266, 312, 501, 701 |
| GlaI | GCGC | 3 cut(s) | 361, 363, 642 |
| GluI | GCNGC | 5 cut(s) | 446, 449, 483, 486, 705 |
| GsaI | CCCAGC | 1 cut(s) | 360 |
| GsuI | CTGGAG | 1 cut(s) | 599 |
| HaeIII | GGCC | 6 cut(s) | 321, 339, 485, 527, 575, 662 |
| HapII | CCGG | 2 cut(s) | 86, 176 |
| HhaI | GCGC | 3 cut(s) | 362, 364, 643 |
| Hin1II | CATG | 1 cut(s) | 167 |
| Hin6I | GCGC | 3 cut(s) | 360, 362, 641 |
| HinP1I | GCGC | 3 cut(s) | 360, 362, 641 |
| HinfI | GANTC | 2 cut(s) | 557, 625 |
| HpaII | CCGG | 2 cut(s) | 86, 176 |
| HphI | GGTGA | 2 cut(s) | 18, 578 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 351 |
| Hpy188III | TCNNGA | 4 cut(s) | 164, 203, 252, 629 |
| Hpy99I | CGWCG | 1 cut(s) | 330 |
| HpyAV | CCTTC | 4 cut(s) | 311, 332, 398, 472 |
| HpyCH4III | ACNGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 1 cut(s) | 451 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 125, 327, 336, 502, 659, 668 |
| HpyF3I | CTNAG | 2 cut(s) | 386, 423 |
| Hsp92II | CATG | 1 cut(s) | 167 |
| HspAI | GCGC | 3 cut(s) | 360, 362, 641 |
| Kzo9I | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| LmnI | GCTCC | 3 cut(s) | 19, 196, 407 |
| Lsp1109I | GCAGC | 2 cut(s) | 432, 435 |
| LweI | GCATC | 1 cut(s) | 298 |
| MaeI | CTAG | 6 cut(s) | 57, 257, 266, 312, 501, 701 |
| MaeIII | GTNAC | 2 cut(s) | 24, 655 |
| MalI | GATC | 7 cut(s) | 42, 225, 456, 522, 570, 591, 633 |
| MboI | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| MboII | GAAGA | 2 cut(s) | 47, 626 |
| MflI | RGATCY | 3 cut(s) | 454, 589, 631 |
| MhlI | GDGCHC | 1 cut(s) | 341 |
| MluCI | AATT | 3 cut(s) | 65, 547, 644 |
| MlyI | GAGTC | 1 cut(s) | 551 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 1 cut(s) | 647 |
| MspA1I | CMGCKG | 1 cut(s) | 445 |
| MspI | CCGG | 2 cut(s) | 86, 176 |
| MspR9I | CCNGG | 4 cut(s) | 110, 294, 335, 664 |
| MvaI | CCWGG | 4 cut(s) | 110, 294, 335, 664 |
| MvnI | CGCG | 4 cut(s) | 273, 362, 488, 555 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 125, 327, 336, 502, 659, 668 |
| NdeII | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| NheI | GCTAGC | 1 cut(s) | 265 |
| NlaIII | CATG | 1 cut(s) | 167 |
| NlaIV | GGNNCC | 6 cut(s) | 114, 198, 288, 339, 409, 681 |
| NmuCI | GTSAC | 2 cut(s) | 24, 655 |
| NotI | GCGGCCGC | 1 cut(s) | 483 |
| PagI | TCATGA | 1 cut(s) | 163 |
| PauI | GCGCGC | 1 cut(s) | 360 |
| PceI | AGGCCT | 1 cut(s) | 321 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 1 cut(s) | 625 |
| PkrI | GCNGC | 5 cut(s) | 447, 450, 484, 487, 706 |
| PleI | GAGTC | 1 cut(s) | 551 |
| PpsI | GAGTC | 1 cut(s) | 551 |
| Psp6I | CCWGG | 4 cut(s) | 108, 292, 333, 662 |
| PspFI | CCCAGC | 1 cut(s) | 356 |
| PspGI | CCWGG | 4 cut(s) | 108, 292, 333, 662 |
| PspN4I | GGNNCC | 6 cut(s) | 114, 198, 288, 339, 409, 681 |
| PspOMI | GGGCCC | 1 cut(s) | 337 |
| PspPI | GGNCC | 5 cut(s) | 286, 337, 338, 526, 573 |
| PstI | CTGCAG | 1 cut(s) | 453 |
| PstNI | CAGNNNCTG | 2 cut(s) | 188, 448 |
| PsuI | RGATCY | 3 cut(s) | 454, 589, 631 |
| PteI | GCGCGC | 1 cut(s) | 360 |
| PvuII | CAGCTG | 1 cut(s) | 445 |
| RsaI | GTAC | 3 cut(s) | 159, 383, 393 |
| RsaNI | GTAC | 3 cut(s) | 158, 382, 392 |
| SaqAI | TTAA | 1 cut(s) | 647 |
| SatI | GCNGC | 5 cut(s) | 446, 449, 483, 486, 705 |
| Sau3AI | GATC | 7 cut(s) | 40, 223, 454, 520, 568, 589, 631 |
| Sau96I | GGNCC | 5 cut(s) | 286, 337, 338, 526, 573 |
| SchI | GAGTC | 1 cut(s) | 551 |
| ScrFI | CCNGG | 4 cut(s) | 110, 294, 335, 664 |
| SduI | GDGCHC | 1 cut(s) | 341 |
| SfaNI | GCATC | 1 cut(s) | 298 |
| SfcI | CTRYAG | 2 cut(s) | 219, 449 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| Sse9I | AATT | 3 cut(s) | 65, 547, 644 |
| SseBI | AGGCCT | 1 cut(s) | 321 |
| SsiI | CCGC | 5 cut(s) | 19, 194, 482, 486, 705 |
| SspMI | CTAG | 6 cut(s) | 57, 257, 266, 312, 501, 701 |
| StuI | AGGCCT | 1 cut(s) | 321 |
| StyD4I | CCNGG | 4 cut(s) | 108, 292, 333, 662 |
| TaaI | ACNGT | 1 cut(s) | 172 |
| TaqI | TCGA | 2 cut(s) | 402, 711 |
| TasI | AATT | 3 cut(s) | 65, 547, 644 |
| TauI | GCSGC | 3 cut(s) | 485, 488, 707 |
| TfiI | GAWTC | 1 cut(s) | 625 |
| Tru1I | TTAA | 1 cut(s) | 647 |
| Tru9I | TTAA | 1 cut(s) | 647 |
| TscAI | CASTG | 2 cut(s) | 177, 421 |
| TseFI | GTSAC | 2 cut(s) | 24, 655 |
| TseI | GCWGC | 2 cut(s) | 445, 448 |
| Tsp45I | GTSAC | 2 cut(s) | 24, 655 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| TspRI | CASTG | 2 cut(s) | 177, 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 373 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 6 cut(s) | 57, 257, 266, 312, 501, 701 |