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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 425 |
| AccI | GTMKAC | 1 cut(s) | 230 |
| AccII | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| AciI | CCGC | 4 cut(s) | 163, 265, 339, 404 |
| AclWI | GGATC | 3 cut(s) | 275, 323, 336 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AfeI | AGCGCT | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 11 |
| AgeI | ACCGGT | 1 cut(s) | 38 |
| AlwI | GGATC | 3 cut(s) | 275, 323, 336 |
| Ama87I | CYCGRG | 2 cut(s) | 11, 390 |
| Aor51HI | AGCGCT | 1 cut(s) | 411 |
| AoxI | GGCC | 2 cut(s) | 130, 423 |
| ApaI | GGGCCC | 1 cut(s) | 427 |
| AsiGI | ACCGGT | 1 cut(s) | 38 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 216 |
| AspLEI | GCGC | 4 cut(s) | 343, 355, 412, 434 |
| AspS9I | GGNCC | 2 cut(s) | 423, 424 |
| AsuC2I | CCSGG | 4 cut(s) | 12, 13, 147, 311 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 354 |
| AvaI | CYCGRG | 2 cut(s) | 11, 390 |
| BaeGI | GKGCMC | 1 cut(s) | 427 |
| BamHI | GGATCC | 1 cut(s) | 328 |
| BanII | GRGCYC | 1 cut(s) | 427 |
| BccI | CCATC | 3 cut(s) | 141, 233, 381 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 395, 429 |
| BcnI | CCSGG | 4 cut(s) | 12, 13, 147, 311 |
| BfoI | RGCGCY | 2 cut(s) | 356, 413 |
| BfuAI | ACCTGC | 1 cut(s) | 425 |
| BisI | GCNGC | 2 cut(s) | 339, 404 |
| BlsI | GCNGC | 2 cut(s) | 340, 405 |
| Bme1390I | CCNGG | 4 cut(s) | 12, 13, 147, 311 |
| BmeT110I | CYCGRG | 2 cut(s) | 11, 390 |
| BmgT120I | GGNCC | 2 cut(s) | 423, 424 |
| BmiI | GGNNCC | 3 cut(s) | 176, 330, 425 |
| BmrFI | CCNGG | 4 cut(s) | 12, 13, 147, 311 |
| BpuEI | CTTGAG | 2 cut(s) | 154, 344 |
| BpuMI | CCSGG | 4 cut(s) | 12, 13, 147, 311 |
| Bsa29I | ATCGAT | 1 cut(s) | 237 |
| BsaBI | GATNNNNATC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 11, 146, 309 |
| BsaWI | WCCGGW | 1 cut(s) | 38 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 354, 384 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 11 |
| Bse118I | RCCGGY | 2 cut(s) | 38, 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 372 |
| BseCI | ATCGAT | 1 cut(s) | 237 |
| BseDI | CCNNGG | 4 cut(s) | 10, 11, 146, 309 |
| BseGI | GGATG | 2 cut(s) | 248, 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BseRI | GAGGAG | 1 cut(s) | 213 |
| BseSI | GKGCMC | 1 cut(s) | 427 |
| Bsh1236I | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| Bsh1285I | CGRYCG | 3 cut(s) | 39, 237, 336 |
| BshFI | GGCC | 2 cut(s) | 132, 425 |
| BshTI | ACCGGT | 1 cut(s) | 38 |
| BshVI | ATCGAT | 1 cut(s) | 237 |
| BsiEI | CGRYCG | 3 cut(s) | 39, 237, 336 |
| BsiHKCI | CYCGRG | 2 cut(s) | 11, 390 |
| BsiSI | CCGG | 5 cut(s) | 12, 39, 146, 311, 350 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BsnI | GGCC | 2 cut(s) | 132, 425 |
| BsoBI | CYCGRG | 2 cut(s) | 11, 390 |
| Bsp120I | GGGCCC | 1 cut(s) | 423 |
| Bsp1286I | GDGCHC | 1 cut(s) | 427 |
| Bsp143I | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| Bsp68I | TCGCGA | 1 cut(s) | 188 |
| BspACI | CCGC | 4 cut(s) | 163, 265, 339, 404 |
| BspANI | GGCC | 2 cut(s) | 132, 425 |
| BspDI | ATCGAT | 1 cut(s) | 237 |
| BspFNI | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| BspLI | GGNNCC | 3 cut(s) | 176, 330, 425 |
| BspMI | ACCTGC | 1 cut(s) | 425 |
| BspPI | GGATC | 3 cut(s) | 275, 323, 336 |
| BspQI | GCTCTTC | 1 cut(s) | 162 |
| BsrFI | RCCGGY | 2 cut(s) | 38, 349 |
| BssAI | RCCGGY | 2 cut(s) | 38, 349 |
| BssECI | CCNNGG | 4 cut(s) | 10, 11, 146, 309 |
| BssMI | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 202 |
| Bst6I | CTCTTC | 2 cut(s) | 162, 291 |
| BstC8I | GCNNGC | 2 cut(s) | 357, 408 |
| BstDEI | CTNAG | 1 cut(s) | 443 |
| BstF5I | GGATG | 2 cut(s) | 248, 373 |
| BstFNI | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| BstH2I | RGCGCY | 2 cut(s) | 356, 413 |
| BstHHI | GCGC | 4 cut(s) | 343, 355, 412, 434 |
| BstKTI | GATC | 5 cut(s) | 237, 270, 331, 336, 370 |
| BstMBI | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| BstMCI | CGRYCG | 3 cut(s) | 39, 237, 336 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 409, 431 |
| BstSCI | CCNGG | 4 cut(s) | 10, 11, 145, 309 |
| BstSLI | GKGCMC | 1 cut(s) | 427 |
| BstUI | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| BstX2I | RGATCY | 1 cut(s) | 328 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 202 |
| BstYI | RGATCY | 1 cut(s) | 328 |
| Bsu15I | ATCGAT | 1 cut(s) | 237 |
| BsuRI | GGCC | 2 cut(s) | 132, 425 |
| BsuTUI | ATCGAT | 1 cut(s) | 237 |
| BtsCI | GGATG | 2 cut(s) | 248, 373 |
| BtuMI | TCGCGA | 1 cut(s) | 188 |
| BveI | ACCTGC | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 2 cut(s) | 357, 408 |
| CfoI | GCGC | 4 cut(s) | 343, 355, 412, 434 |
| Cfr10I | RCCGGY | 2 cut(s) | 38, 349 |
| Cfr13I | GGNCC | 2 cut(s) | 423, 424 |
| Cfr9I | CCCGGG | 1 cut(s) | 11 |
| ClaI | ATCGAT | 1 cut(s) | 237 |
| CseI | GACGC | 2 cut(s) | 323, 348 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CspAI | ACCGGT | 1 cut(s) | 38 |
| CviJI | RGCY | 4 cut(s) | 61, 132, 155, 425 |
| CviKI_1 | RGCY | 4 cut(s) | 61, 132, 155, 425 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DdeI | CTNAG | 1 cut(s) | 443 |
| DpnI | GATC | 5 cut(s) | 236, 269, 330, 335, 369 |
| DpnII | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| Eam1104I | CTCTTC | 2 cut(s) | 162, 291 |
| EarI | CTCTTC | 2 cut(s) | 162, 291 |
| Eco24I | GRGCYC | 1 cut(s) | 427 |
| Eco47III | AGCGCT | 1 cut(s) | 411 |
| Eco88I | CYCGRG | 2 cut(s) | 11, 390 |
| EcoO109I | RGGNCCY | 1 cut(s) | 423 |
| EcoT38I | GRGCYC | 1 cut(s) | 427 |
| FaiI | YATR | 4 cut(s) | 65, 94, 141, 272 |
| FblI | GTMKAC | 1 cut(s) | 230 |
| Fnu4HI | GCNGC | 2 cut(s) | 339, 404 |
| FokI | GGATG | 2 cut(s) | 235, 360 |
| FriOI | GRGCYC | 1 cut(s) | 427 |
| Fsp4HI | GCNGC | 2 cut(s) | 339, 404 |
| GlaI | GCGC | 4 cut(s) | 342, 354, 411, 433 |
| GluI | GCNGC | 2 cut(s) | 339, 404 |
| HaeII | RGCGCY | 2 cut(s) | 356, 413 |
| HaeIII | GGCC | 2 cut(s) | 132, 425 |
| HapII | CCGG | 5 cut(s) | 12, 39, 146, 311, 350 |
| HgaI | GACGC | 2 cut(s) | 323, 348 |
| HhaI | GCGC | 4 cut(s) | 343, 355, 412, 434 |
| Hin6I | GCGC | 4 cut(s) | 341, 353, 410, 432 |
| HinP1I | GCGC | 4 cut(s) | 341, 353, 410, 432 |
| HincII | GTYRAC | 1 cut(s) | 231 |
| HindII | GTYRAC | 1 cut(s) | 231 |
| HpaII | CCGG | 5 cut(s) | 12, 39, 146, 311, 350 |
| HphI | GGTGA | 2 cut(s) | 152, 354 |
| Hpy166II | GTNNAC | 1 cut(s) | 231 |
| Hpy188I | TCNGA | 2 cut(s) | 333, 417 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 377, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 231 |
| Hpy99I | CGWCG | 3 cut(s) | 232, 235, 432 |
| HpyAV | CCTTC | 2 cut(s) | 145, 193 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 202 |
| HpyCH4V | TGCA | 1 cut(s) | 305 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 409, 431 |
| HpyF3I | CTNAG | 1 cut(s) | 443 |
| HspAI | GCGC | 4 cut(s) | 341, 353, 410, 432 |
| Kzo9I | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| LguI | GCTCTTC | 1 cut(s) | 162 |
| LpnPI | CCDG | 7 cut(s) | 25, 52, 114, 159, 324, 363, 420 |
| MaeIII | GTNAC | 1 cut(s) | 360 |
| MalI | GATC | 5 cut(s) | 236, 269, 330, 335, 369 |
| MboI | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| MboII | GAAGA | 6 cut(s) | 28, 31, 103, 149, 209, 308 |
| MflI | RGATCY | 1 cut(s) | 328 |
| MhlI | GDGCHC | 1 cut(s) | 427 |
| MnlI | CCTC | 8 cut(s) | 44, 231, 234, 262, 268, 319, 376, 414 |
| MroXI | GAANNNNTTC | 1 cut(s) | 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| MspI | CCGG | 5 cut(s) | 12, 39, 146, 311, 350 |
| MspR9I | CCNGG | 4 cut(s) | 12, 13, 147, 311 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvnI | CGCG | 4 cut(s) | 188, 341, 359, 432 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 409, 431 |
| NciI | CCSGG | 4 cut(s) | 12, 13, 147, 311 |
| NdeII | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| NlaIV | GGNNCC | 3 cut(s) | 176, 330, 425 |
| NmuCI | GTSAC | 1 cut(s) | 360 |
| NruI | TCGCGA | 1 cut(s) | 188 |
| PaeR7I | CTCGAG | 1 cut(s) | 390 |
| PciSI | GCTCTTC | 1 cut(s) | 162 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 363 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PdmI | GAANNNNTTC | 1 cut(s) | 216 |
| PinAI | ACCGGT | 1 cut(s) | 38 |
| PkrI | GCNGC | 2 cut(s) | 340, 405 |
| Ple19I | CGATCG | 2 cut(s) | 237, 336 |
| PspN4I | GGNNCC | 3 cut(s) | 176, 330, 425 |
| PspOMI | GGGCCC | 1 cut(s) | 423 |
| PspPI | GGNCC | 2 cut(s) | 423, 424 |
| PsuI | RGATCY | 1 cut(s) | 328 |
| PvuI | CGATCG | 2 cut(s) | 237, 336 |
| RruI | TCGCGA | 1 cut(s) | 188 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SalI | GTCGAC | 1 cut(s) | 229 |
| SapI | GCTCTTC | 1 cut(s) | 162 |
| SatI | GCNGC | 2 cut(s) | 339, 404 |
| Sau3AI | GATC | 5 cut(s) | 234, 267, 328, 333, 367 |
| Sau96I | GGNCC | 2 cut(s) | 423, 424 |
| ScrFI | CCNGG | 4 cut(s) | 12, 13, 147, 311 |
| SduI | GDGCHC | 1 cut(s) | 427 |
| SetI | ASST | 1 cut(s) | 439 |
| Sfr274I | CTCGAG | 1 cut(s) | 390 |
| SgrAI | CRCCGGYG | 1 cut(s) | 349 |
| SgrDI | CGTCGACG | 1 cut(s) | 229 |
| SlaI | CTCGAG | 1 cut(s) | 390 |
| SmaI | CCCGGG | 1 cut(s) | 13 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 3 cut(s) | 169, 323, 390 |
| SmoI | CTYRAG | 3 cut(s) | 169, 323, 390 |
| SsiI | CCGC | 4 cut(s) | 163, 265, 339, 404 |
| StyD4I | CCNGG | 4 cut(s) | 10, 11, 145, 309 |
| TaaI | ACNGT | 2 cut(s) | 46, 202 |
| TaqI | TCGA | 4 cut(s) | 123, 230, 237, 391 |
| TauI | GCSGC | 2 cut(s) | 341, 406 |
| TseFI | GTSAC | 1 cut(s) | 360 |
| Tsp45I | GTSAC | 1 cut(s) | 360 |
| TspDTI | ATGAA | 3 cut(s) | 38, 237, 303 |
| TspGWI | ACGGA | 3 cut(s) | 131, 216, 308 |
| TspMI | CCCGGG | 1 cut(s) | 11 |
| XhoI | CTCGAG | 1 cut(s) | 390 |
| XmaI | CCCGGG | 1 cut(s) | 11 |
| XmiI | GTMKAC | 1 cut(s) | 230 |
| XmnI | GAANNNNTTC | 1 cut(s) | 216 |