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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 895 |
| AccB1I | GGYRCC | 3 cut(s) | 152, 220, 660 |
| AccII | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| AccIII | TCCGGA | 2 cut(s) | 306, 582 |
| AclWI | GGATC | 5 cut(s) | 298, 311, 516, 875, 888 |
| AcoI | YGGCCR | 2 cut(s) | 186, 357 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcyI | GRCGYC | 2 cut(s) | 221, 726 |
| AfaI | GTAC | 2 cut(s) | 401, 440 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 156, 184, 217, 643, 675, 752, 785 |
| AgeI | ACCGGT | 1 cut(s) | 210 |
| AgsI | TTSAA | 3 cut(s) | 655, 701, 750 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 211 |
| AjnI | CCWGG | 2 cut(s) | 155, 784 |
| AluBI | AGCT | 2 cut(s) | 613, 771 |
| AluI | AGCT | 2 cut(s) | 613, 771 |
| Alw21I | GWGCWC | 3 cut(s) | 615, 708, 773 |
| Alw26I | GTCTC | 1 cut(s) | 572 |
| AlwI | GGATC | 5 cut(s) | 298, 311, 516, 875, 888 |
| Ama87I | CYCGRG | 1 cut(s) | 674 |
| Aor13HI | TCCGGA | 2 cut(s) | 306, 582 |
| AoxI | GGCC | 8 cut(s) | 3, 174, 186, 278, 357, 645, 735, 780 |
| ApeKI | GCWGC | 2 cut(s) | 109, 891 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AsiGI | ACCGGT | 1 cut(s) | 210 |
| AspLEI | GCGC | 5 cut(s) | 23, 223, 564, 896, 908 |
| AspS9I | GGNCC | 8 cut(s) | 4, 159, 175, 279, 309, 666, 759, 781 |
| AsuC2I | CCSGG | 2 cut(s) | 7, 517 |
| AsuHPI | GGTGA | 1 cut(s) | 907 |
| AvaI | CYCGRG | 1 cut(s) | 674 |
| AvaII | GGWCC | 4 cut(s) | 159, 309, 666, 759 |
| BamHI | GGATCC | 2 cut(s) | 303, 880 |
| BanI | GGYRCC | 3 cut(s) | 152, 220, 660 |
| BanII | GRGCYC | 3 cut(s) | 203, 615, 773 |
| BbsI | GAAGAC | 1 cut(s) | 729 |
| Bbv12I | GWGCWC | 3 cut(s) | 615, 708, 773 |
| BbvI | GCAGC | 2 cut(s) | 96, 878 |
| BccI | CCATC | 2 cut(s) | 39, 372 |
| BceAI | ACGGC | 4 cut(s) | 189, 201, 549, 565 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 366, 400, 599, 633 |
| BciT130I | CCWGG | 2 cut(s) | 157, 786 |
| BcnI | CCSGG | 2 cut(s) | 7, 517 |
| BcoDI | GTCTC | 1 cut(s) | 572 |
| BfaI | CTAG | 3 cut(s) | 167, 446, 498 |
| BfoI | RGCGCY | 3 cut(s) | 24, 224, 909 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 734 |
| BisI | GCNGC | 9 cut(s) | 19, 110, 189, 331, 388, 560, 591, 790, 892 |
| BlsI | GCNGC | 9 cut(s) | 20, 111, 190, 332, 389, 561, 592, 791, 893 |
| BmcAI | AGTACT | 1 cut(s) | 401 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 157, 517, 786 |
| Bme18I | GGWCC | 4 cut(s) | 159, 309, 666, 759 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 211 |
| BmeT110I | CYCGRG | 1 cut(s) | 674 |
| BmgT120I | GGNCC | 8 cut(s) | 4, 159, 175, 279, 309, 666, 759, 781 |
| BmiI | GGNNCC | 8 cut(s) | 154, 177, 222, 281, 305, 662, 783, 882 |
| BmrFI | CCNGG | 4 cut(s) | 7, 157, 517, 786 |
| BmsI | GCATC | 3 cut(s) | 242, 264, 801 |
| BpiI | GAAGAC | 1 cut(s) | 729 |
| BpuEI | CTTGAG | 3 cut(s) | 119, 798, 896 |
| BpuMI | CCSGG | 2 cut(s) | 7, 517 |
| BsaBI | GATNNNNATC | 1 cut(s) | 925 |
| BsaHI | GRCGYC | 2 cut(s) | 221, 726 |
| BsaJI | CCNNGG | 5 cut(s) | 515, 594, 673, 784, 861 |
| BsaWI | WCCGGW | 4 cut(s) | 80, 210, 306, 582 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 386, 416, 755, 785 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 156, 184, 217, 643, 675, 752, 785 |
| Bse118I | RCCGGY | 7 cut(s) | 149, 210, 355, 639, 663, 778, 902 |
| Bse8I | GATNNNNATC | 1 cut(s) | 925 |
| BseAI | TCCGGA | 2 cut(s) | 306, 582 |
| BseBI | CCWGG | 2 cut(s) | 157, 786 |
| BseDI | CCNNGG | 5 cut(s) | 515, 594, 673, 784, 861 |
| BseGI | GGATG | 2 cut(s) | 255, 579 |
| BseJI | GATNNNNATC | 1 cut(s) | 925 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 156, 184, 217, 643, 675, 752, 785 |
| BseRI | GAGGAG | 3 cut(s) | 394, 399, 763 |
| BseX3I | CGGCCG | 2 cut(s) | 186, 357 |
| BseXI | GCAGC | 2 cut(s) | 96, 878 |
| BsgI | GTGCAG | 1 cut(s) | 112 |
| Bsh1236I | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| Bsh1285I | CGRYCG | 5 cut(s) | 64, 81, 189, 360, 888 |
| BshFI | GGCC | 8 cut(s) | 5, 176, 188, 280, 359, 647, 737, 782 |
| BshNI | GGYRCC | 3 cut(s) | 152, 220, 660 |
| BshTI | ACCGGT | 1 cut(s) | 210 |
| BsiEI | CGRYCG | 5 cut(s) | 64, 81, 189, 360, 888 |
| BsiHKAI | GWGCWC | 3 cut(s) | 615, 708, 773 |
| BsiHKCI | CYCGRG | 1 cut(s) | 674 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 156, 184, 217, 643, 675, 752, 785 |
| BsmAI | GTCTC | 1 cut(s) | 572 |
| BsmBI | CGTCTC | 1 cut(s) | 572 |
| BsmI | GAATGC | 2 cut(s) | 428, 858 |
| BsnI | GGCC | 8 cut(s) | 5, 176, 188, 280, 359, 647, 737, 782 |
| BsoBI | CYCGRG | 1 cut(s) | 674 |
| Bsp1286I | GDGCHC | 4 cut(s) | 203, 615, 708, 773 |
| Bsp13I | TCCGGA | 2 cut(s) | 306, 582 |
| Bsp143I | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| BspANI | GGCC | 8 cut(s) | 5, 176, 188, 280, 359, 647, 737, 782 |
| BspEI | TCCGGA | 2 cut(s) | 306, 582 |
| BspFNI | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| BspLI | GGNNCC | 8 cut(s) | 154, 177, 222, 281, 305, 662, 783, 882 |
| BspPI | GGATC | 5 cut(s) | 298, 311, 516, 875, 888 |
| BspT107I | GGYRCC | 3 cut(s) | 152, 220, 660 |
| BsrFI | RCCGGY | 7 cut(s) | 149, 210, 355, 639, 663, 778, 902 |
| BssAI | RCCGGY | 7 cut(s) | 149, 210, 355, 639, 663, 778, 902 |
| BssECI | CCNNGG | 5 cut(s) | 515, 594, 673, 784, 861 |
| BssMI | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| BssNI | GRCGYC | 2 cut(s) | 221, 726 |
| Bst2UI | CCWGG | 2 cut(s) | 157, 786 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 464 |
| Bst6I | CTCTTC | 1 cut(s) | 842 |
| BstACI | GRCGYC | 2 cut(s) | 221, 726 |
| BstC8I | GCNNGC | 8 cut(s) | 357, 545, 637, 708, 712, 769, 780, 910 |
| BstF5I | GGATG | 2 cut(s) | 255, 579 |
| BstFNI | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| BstH2I | RGCGCY | 3 cut(s) | 24, 224, 909 |
| BstHHI | GCGC | 5 cut(s) | 23, 223, 564, 896, 908 |
| BstKTI | GATC | 8 cut(s) | 269, 306, 364, 524, 539, 883, 888, 923 |
| BstMAI | GTCTC | 1 cut(s) | 572 |
| BstMBI | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| BstMCI | CGRYCG | 5 cut(s) | 64, 81, 189, 360, 888 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 352, 526, 549, 734 |
| BstNI | CCWGG | 2 cut(s) | 157, 786 |
| BstNSI | RCATGY | 2 cut(s) | 237, 457 |
| BstSCI | CCNGG | 4 cut(s) | 5, 155, 515, 784 |
| BstUI | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| BstV1I | GCAGC | 2 cut(s) | 96, 878 |
| BstV2I | GAAGAC | 1 cut(s) | 729 |
| BstX2I | RGATCY | 2 cut(s) | 303, 880 |
| BstYI | RGATCY | 2 cut(s) | 303, 880 |
| BstZI | CGGCCG | 2 cut(s) | 186, 357 |
| BsuRI | GGCC | 8 cut(s) | 5, 176, 188, 280, 359, 647, 737, 782 |
| BtsCI | GGATG | 2 cut(s) | 255, 579 |
| Cac8I | GCNNGC | 8 cut(s) | 357, 545, 637, 708, 712, 769, 780, 910 |
| CfoI | GCGC | 5 cut(s) | 23, 223, 564, 896, 908 |
| Cfr10I | RCCGGY | 7 cut(s) | 149, 210, 355, 639, 663, 778, 902 |
| Cfr13I | GGNCC | 8 cut(s) | 4, 159, 175, 279, 309, 666, 759, 781 |
| CseI | GACGC | 3 cut(s) | 734, 875, 901 |
| Csp6I | GTAC | 2 cut(s) | 400, 439 |
| CspAI | ACCGGT | 1 cut(s) | 210 |
| CviAII | CATG | 2 cut(s) | 234, 454 |
| CviQI | GTAC | 2 cut(s) | 400, 439 |
| DinI | GGCGCC | 1 cut(s) | 222 |
| DpnI | GATC | 8 cut(s) | 268, 305, 363, 523, 538, 882, 887, 922 |
| DpnII | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| DriI | GACNNNNNGTC | 1 cut(s) | 211 |
| EaeI | YGGCCR | 2 cut(s) | 186, 357 |
| EagI | CGGCCG | 2 cut(s) | 186, 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 842 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 211 |
| EarI | CTCTTC | 1 cut(s) | 842 |
| EciI | GGCGGA | 2 cut(s) | 317, 546 |
| Ecl136II | GAGCTC | 2 cut(s) | 613, 771 |
| EclXI | CGGCCG | 2 cut(s) | 186, 357 |
| Eco147I | AGGCCT | 1 cut(s) | 737 |
| Eco24I | GRGCYC | 3 cut(s) | 203, 615, 773 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco47I | GGWCC | 4 cut(s) | 159, 309, 666, 759 |
| Eco52I | CGGCCG | 2 cut(s) | 186, 357 |
| Eco53kI | GAGCTC | 2 cut(s) | 613, 771 |
| Eco88I | CYCGRG | 1 cut(s) | 674 |
| EcoICRI | GAGCTC | 2 cut(s) | 613, 771 |
| EcoRII | CCWGG | 2 cut(s) | 155, 784 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT22I | ATGCAT | 1 cut(s) | 257 |
| EcoT38I | GRGCYC | 3 cut(s) | 203, 615, 773 |
| EgeI | GGCGCC | 1 cut(s) | 222 |
| EheI | GGCGCC | 1 cut(s) | 222 |
| Esp3I | CGTCTC | 1 cut(s) | 572 |
| FaeI | CATG | 2 cut(s) | 237, 457 |
| FaiI | YATR | 9 cut(s) | 37, 122, 235, 455, 460, 505, 618, 685, 824 |
| FatI | CATG | 2 cut(s) | 233, 453 |
| FauI | CCCGC | 3 cut(s) | 351, 360, 644 |
| Fnu4HI | GCNGC | 9 cut(s) | 19, 110, 189, 331, 388, 560, 591, 790, 892 |
| FokI | GGATG | 2 cut(s) | 242, 566 |
| FriOI | GRGCYC | 3 cut(s) | 203, 615, 773 |
| Fsp4HI | GCNGC | 9 cut(s) | 19, 110, 189, 331, 388, 560, 591, 790, 892 |
| FspBI | CTAG | 3 cut(s) | 167, 446, 498 |
| FspI | TGCGCA | 1 cut(s) | 895 |
| GlaI | GCGC | 5 cut(s) | 22, 222, 563, 895, 907 |
| GluI | GCNGC | 9 cut(s) | 19, 110, 189, 331, 388, 560, 591, 790, 892 |
| HaeII | RGCGCY | 3 cut(s) | 24, 224, 909 |
| HaeIII | GGCC | 8 cut(s) | 5, 176, 188, 280, 359, 647, 737, 782 |
| HgaI | GACGC | 3 cut(s) | 734, 875, 901 |
| HhaI | GCGC | 5 cut(s) | 23, 223, 564, 896, 908 |
| Hin1I | GRCGYC | 2 cut(s) | 221, 726 |
| Hin1II | CATG | 2 cut(s) | 237, 457 |
| Hin6I | GCGC | 5 cut(s) | 21, 221, 562, 894, 906 |
| HinP1I | GCGC | 5 cut(s) | 21, 221, 562, 894, 906 |
| HinfI | GANTC | 1 cut(s) | 486 |
| HphI | GGTGA | 1 cut(s) | 907 |
| Hpy166II | GTNNAC | 1 cut(s) | 806 |
| Hpy188I | TCNGA | 6 cut(s) | 205, 288, 577, 759, 865, 885 |
| Hpy188III | TCNNGA | 9 cut(s) | 65, 264, 307, 583, 676, 689, 803, 815, 930 |
| Hpy8I | GTNNAC | 1 cut(s) | 806 |
| Hpy99I | CGWCG | 1 cut(s) | 252 |
| HpyAV | CCTTC | 3 cut(s) | 293, 500, 756 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 464 |
| HpyCH4V | TGCA | 4 cut(s) | 129, 141, 255, 856 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 352, 526, 549, 734 |
| Hsp92I | GRCGYC | 2 cut(s) | 221, 726 |
| Hsp92II | CATG | 2 cut(s) | 237, 457 |
| HspAI | GCGC | 5 cut(s) | 21, 221, 562, 894, 906 |
| KasI | GGCGCC | 1 cut(s) | 220 |
| Kpn2I | TCCGGA | 2 cut(s) | 306, 582 |
| KroI | GCCGGC | 2 cut(s) | 355, 778 |
| KroNI | GCCGGC | 2 cut(s) | 357, 780 |
| Kzo9I | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| LmnI | GCTCC | 2 cut(s) | 625, 776 |
| Lsp1109I | GCAGC | 2 cut(s) | 96, 878 |
| LweI | GCATC | 3 cut(s) | 242, 264, 801 |
| MaeI | CTAG | 3 cut(s) | 167, 446, 498 |
| MaeIII | GTNAC | 1 cut(s) | 913 |
| MalI | GATC | 8 cut(s) | 268, 305, 363, 523, 538, 882, 887, 922 |
| MboI | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| MboII | GAAGA | 6 cut(s) | 316, 347, 492, 495, 734, 859 |
| MfeI | CAATTG | 2 cut(s) | 365, 655 |
| MflI | RGATCY | 2 cut(s) | 303, 880 |
| MhlI | GDGCHC | 4 cut(s) | 203, 615, 708, 773 |
| MluCI | AATT | 5 cut(s) | 116, 365, 471, 655, 798 |
| Mly113I | GGCGCC | 1 cut(s) | 221 |
| MmeI | TCCRAC | 1 cut(s) | 737 |
| Mph1103I | ATGCAT | 1 cut(s) | 257 |
| MroI | TCCGGA | 2 cut(s) | 306, 582 |
| MroNI | GCCGGC | 2 cut(s) | 355, 778 |
| MseI | TTAA | 1 cut(s) | 470 |
| MspR9I | CCNGG | 4 cut(s) | 7, 157, 517, 786 |
| MunI | CAATTG | 2 cut(s) | 365, 655 |
| Mva1269I | GAATGC | 2 cut(s) | 428, 858 |
| MvaI | CCWGG | 2 cut(s) | 157, 786 |
| MvnI | CGCG | 7 cut(s) | 18, 77, 333, 390, 562, 767, 912 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 352, 526, 549, 734 |
| NaeI | GCCGGC | 2 cut(s) | 357, 780 |
| NarI | GGCGCC | 1 cut(s) | 221 |
| NciI | CCSGG | 2 cut(s) | 7, 517 |
| NdeII | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| NgoMIV | GCCGGC | 2 cut(s) | 355, 778 |
| NlaIII | CATG | 2 cut(s) | 237, 457 |
| NlaIV | GGNNCC | 8 cut(s) | 154, 177, 222, 281, 305, 662, 783, 882 |
| NmeAIII | GCCGAG | 2 cut(s) | 582, 619 |
| NmuCI | GTSAC | 1 cut(s) | 913 |
| NsbI | TGCGCA | 1 cut(s) | 895 |
| NsiI | ATGCAT | 1 cut(s) | 257 |
| NspI | RCATGY | 2 cut(s) | 237, 457 |
| PceI | AGGCCT | 1 cut(s) | 737 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 22, 916 |
| PctI | GAATGC | 2 cut(s) | 428, 858 |
| PdiI | GCCGGC | 2 cut(s) | 357, 780 |
| PfeI | GAWTC | 1 cut(s) | 486 |
| PinAI | ACCGGT | 1 cut(s) | 210 |
| PkrI | GCNGC | 9 cut(s) | 20, 111, 190, 332, 389, 561, 592, 791, 893 |
| Ple19I | CGATCG | 1 cut(s) | 888 |
| PluTI | GGCGCC | 1 cut(s) | 224 |
| Psp124BI | GAGCTC | 2 cut(s) | 615, 773 |
| Psp6I | CCWGG | 2 cut(s) | 155, 784 |
| PspGI | CCWGG | 2 cut(s) | 155, 784 |
| PspN4I | GGNNCC | 8 cut(s) | 154, 177, 222, 281, 305, 662, 783, 882 |
| PspPI | GGNCC | 8 cut(s) | 4, 159, 175, 279, 309, 666, 759, 781 |
| PsuI | RGATCY | 2 cut(s) | 303, 880 |
| PvuI | CGATCG | 1 cut(s) | 888 |
| RsaI | GTAC | 2 cut(s) | 401, 440 |
| RsaNI | GTAC | 2 cut(s) | 400, 439 |
| SacI | GAGCTC | 2 cut(s) | 615, 773 |
| SaqAI | TTAA | 1 cut(s) | 470 |
| SatI | GCNGC | 9 cut(s) | 19, 110, 189, 331, 388, 560, 591, 790, 892 |
| Sau3AI | GATC | 8 cut(s) | 266, 303, 361, 521, 536, 880, 885, 920 |
| Sau96I | GGNCC | 8 cut(s) | 4, 159, 175, 279, 309, 666, 759, 781 |
| ScaI | AGTACT | 1 cut(s) | 401 |
| ScrFI | CCNGG | 4 cut(s) | 7, 157, 517, 786 |
| SduI | GDGCHC | 4 cut(s) | 203, 615, 708, 773 |
| SfaNI | GCATC | 3 cut(s) | 242, 264, 801 |
| SfoI | GGCGCC | 1 cut(s) | 222 |
| SgrAI | CRCCGGYG | 1 cut(s) | 902 |
| SinI | GGWCC | 4 cut(s) | 159, 309, 666, 759 |
| SmlI | CTYRAG | 3 cut(s) | 98, 813, 875 |
| SmoI | CTYRAG | 3 cut(s) | 98, 813, 875 |
| Sse9I | AATT | 5 cut(s) | 116, 365, 471, 655, 798 |
| SseBI | AGGCCT | 1 cut(s) | 737 |
| SspDI | GGCGCC | 1 cut(s) | 220 |
| SspMI | CTAG | 3 cut(s) | 167, 446, 498 |
| SstI | GAGCTC | 2 cut(s) | 615, 773 |
| StuI | AGGCCT | 1 cut(s) | 737 |
| StyD4I | CCNGG | 4 cut(s) | 5, 155, 515, 784 |
| TaaI | ACNGT | 2 cut(s) | 62, 464 |
| TaqI | TCGA | 3 cut(s) | 263, 376, 836 |
| TasI | AATT | 5 cut(s) | 116, 365, 471, 655, 798 |
| TatI | WGTACW | 2 cut(s) | 399, 438 |
| TauI | GCSGC | 7 cut(s) | 21, 191, 333, 390, 562, 593, 792 |
| TfiI | GAWTC | 1 cut(s) | 486 |
| Tru1I | TTAA | 1 cut(s) | 470 |
| Tru9I | TTAA | 1 cut(s) | 470 |
| TseFI | GTSAC | 1 cut(s) | 913 |
| TseI | GCWGC | 2 cut(s) | 109, 891 |
| Tsp45I | GTSAC | 1 cut(s) | 913 |
| TspDTI | ATGAA | 3 cut(s) | 24, 109, 854 |
| TspGWI | ACGGA | 2 cut(s) | 316, 859 |
| VpaK11BI | GGWCC | 4 cut(s) | 159, 309, 666, 759 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XceI | RCATGY | 2 cut(s) | 237, 457 |
| XspI | CTAG | 3 cut(s) | 167, 446, 498 |
| ZrmI | AGTACT | 1 cut(s) | 401 |
| Zsp2I | ATGCAT | 1 cut(s) | 257 |