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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 390 |
| AccII | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| AciI | CCGC | 9 cut(s) | 38, 74, 108, 261, 381, 490, 548, 644, 851 |
| AclWI | GGATC | 2 cut(s) | 371, 500 |
| AcuI | CTGAAG | 3 cut(s) | 54, 210, 945 |
| AfaI | GTAC | 3 cut(s) | 171, 832, 889 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 38, 85, 213, 250, 417, 418, 523, 631, 850 |
| AflIII | ACRYGT | 1 cut(s) | 756 |
| AgsI | TTSAA | 8 cut(s) | 176, 533, 608, 737, 765, 796, 827, 837 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 558 |
| AjnI | CCWGG | 3 cut(s) | 9, 206, 522 |
| AluBI | AGCT | 7 cut(s) | 101, 269, 377, 395, 404, 629, 665 |
| AluI | AGCT | 7 cut(s) | 101, 269, 377, 395, 404, 629, 665 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 4 cut(s) | 308, 477, 566, 621 |
| AlwI | GGATC | 2 cut(s) | 371, 500 |
| Ama87I | CYCGRG | 1 cut(s) | 563 |
| AoxI | GGCC | 6 cut(s) | 75, 180, 204, 421, 555, 645 |
| ApeKI | GCWGC | 7 cut(s) | 110, 113, 116, 377, 665, 668, 950 |
| AspLEI | GCGC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 6 cut(s) | 76, 181, 421, 513, 556, 646 |
| AsuC2I | CCSGG | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 3 cut(s) | 61, 316, 562 |
| AvaI | CYCGRG | 1 cut(s) | 563 |
| AvaII | GGWCC | 1 cut(s) | 513 |
| BanII | GRGCYC | 2 cut(s) | 219, 271 |
| BbsI | GAAGAC | 2 cut(s) | 218, 744 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvI | GCAGC | 7 cut(s) | 97, 100, 103, 364, 652, 655, 937 |
| BccI | CCATC | 5 cut(s) | 192, 206, 314, 812, 852 |
| BceAI | ACGGC | 1 cut(s) | 570 |
| BciT130I | CCWGG | 3 cut(s) | 11, 208, 524 |
| BcnI | CCSGG | 1 cut(s) | 252 |
| BcoDI | GTCTC | 4 cut(s) | 308, 477, 566, 621 |
| BfaI | CTAG | 6 cut(s) | 396, 584, 626, 678, 788, 927 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BmcAI | AGTACT | 1 cut(s) | 832 |
| Bme1390I | CCNGG | 4 cut(s) | 11, 208, 252, 524 |
| Bme18I | GGWCC | 1 cut(s) | 513 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 558 |
| BmeT110I | CYCGRG | 1 cut(s) | 563 |
| BmgT120I | GGNCC | 6 cut(s) | 76, 181, 421, 513, 556, 646 |
| BmiI | GGNNCC | 8 cut(s) | 15, 66, 78, 90, 218, 422, 515, 576 |
| BmrFI | CCNGG | 4 cut(s) | 11, 208, 252, 524 |
| BmsI | GCATC | 2 cut(s) | 266, 664 |
| BpiI | GAAGAC | 2 cut(s) | 218, 744 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 921, 953 |
| BpmI | CTGGAG | 2 cut(s) | 105, 293 |
| Bpu10I | CCTNAGC | 2 cut(s) | 135, 630 |
| BpuEI | CTTGAG | 1 cut(s) | 390 |
| BpuMI | CCSGG | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 33, 63 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 38, 85, 213, 250, 417, 418, 523, 631, 850 |
| Bse1I | ACTGG | 1 cut(s) | 156 |
| BseBI | CCWGG | 3 cut(s) | 11, 208, 524 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 4 cut(s) | 184, 217, 240, 257 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 38, 85, 213, 250, 417, 418, 523, 631, 850 |
| BseMII | CTCAG | 5 cut(s) | 126, 221, 303, 309, 644 |
| BseNI | ACTGG | 1 cut(s) | 156 |
| BseXI | GCAGC | 7 cut(s) | 97, 100, 103, 364, 652, 655, 937 |
| Bsh1236I | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| BshFI | GGCC | 6 cut(s) | 77, 182, 206, 423, 557, 647 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 563 |
| BsiSI | CCGG | 3 cut(s) | 62, 68, 251 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 38, 85, 213, 250, 417, 418, 523, 631, 850 |
| BsmAI | GTCTC | 4 cut(s) | 308, 477, 566, 621 |
| BsmBI | CGTCTC | 1 cut(s) | 566 |
| BsmI | GAATGC | 2 cut(s) | 58, 791 |
| BsnI | GGCC | 6 cut(s) | 77, 182, 206, 423, 557, 647 |
| BsoBI | CYCGRG | 1 cut(s) | 563 |
| Bsp1286I | GDGCHC | 2 cut(s) | 219, 271 |
| Bsp143I | GATC | 3 cut(s) | 6, 363, 492 |
| Bsp68I | TCGCGA | 2 cut(s) | 450, 639 |
| BspACI | CCGC | 9 cut(s) | 38, 74, 108, 261, 381, 490, 548, 644, 851 |
| BspANI | GGCC | 6 cut(s) | 77, 182, 206, 423, 557, 647 |
| BspCNI | CTCAG | 5 cut(s) | 127, 222, 304, 310, 643 |
| BspFNI | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| BspHI | TCATGA | 1 cut(s) | 94 |
| BspLI | GGNNCC | 8 cut(s) | 15, 66, 78, 90, 218, 422, 515, 576 |
| BspMAI | CTGCAG | 1 cut(s) | 673 |
| BspPI | GGATC | 2 cut(s) | 371, 500 |
| BspQI | GCTCTTC | 1 cut(s) | 960 |
| BsrI | ACTGG | 1 cut(s) | 156 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 3 cut(s) | 6, 363, 492 |
| Bst2UI | CCWGG | 3 cut(s) | 11, 208, 524 |
| Bst6I | CTCTTC | 1 cut(s) | 960 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 947 |
| BstC8I | GCNNGC | 6 cut(s) | 18, 393, 402, 637, 663, 943 |
| BstDEI | CTNAG | 5 cut(s) | 135, 230, 312, 318, 630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 629 |
| BstF5I | GGATG | 4 cut(s) | 184, 217, 240, 257 |
| BstFNI | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| BstHHI | GCGC | 1 cut(s) | 391 |
| BstKTI | GATC | 3 cut(s) | 9, 366, 495 |
| BstMAI | GTCTC | 4 cut(s) | 308, 477, 566, 621 |
| BstMBI | GATC | 3 cut(s) | 6, 363, 492 |
| BstNI | CCWGG | 3 cut(s) | 11, 208, 524 |
| BstSCI | CCNGG | 4 cut(s) | 9, 206, 250, 522 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstUI | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| BstV1I | GCAGC | 7 cut(s) | 97, 100, 103, 364, 652, 655, 937 |
| BstV2I | GAAGAC | 2 cut(s) | 218, 744 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BsuRI | GGCC | 6 cut(s) | 77, 182, 206, 423, 557, 647 |
| BtsCI | GGATG | 4 cut(s) | 184, 217, 240, 257 |
| BtsI | GCAGTG | 2 cut(s) | 128, 384 |
| BtsIMutI | CAGTG | 3 cut(s) | 128, 309, 384 |
| BtuMI | TCGCGA | 2 cut(s) | 450, 639 |
| Cac8I | GCNNGC | 6 cut(s) | 18, 393, 402, 637, 663, 943 |
| CciI | TCATGA | 1 cut(s) | 94 |
| CfoI | GCGC | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 6 cut(s) | 76, 181, 421, 513, 556, 646 |
| Csp6I | GTAC | 3 cut(s) | 170, 831, 888 |
| CviAII | CATG | 7 cut(s) | 26, 95, 104, 569, 902, 918, 984 |
| CviQI | GTAC | 3 cut(s) | 170, 831, 888 |
| DdeI | CTNAG | 5 cut(s) | 135, 230, 312, 318, 630 |
| DpnI | GATC | 3 cut(s) | 8, 365, 494 |
| DpnII | GATC | 3 cut(s) | 6, 363, 492 |
| DriI | GACNNNNNGTC | 1 cut(s) | 558 |
| Eam1104I | CTCTTC | 1 cut(s) | 960 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 558 |
| EarI | CTCTTC | 1 cut(s) | 960 |
| EciI | GGCGGA | 1 cut(s) | 250 |
| Ecl136II | GAGCTC | 1 cut(s) | 269 |
| Eco24I | GRGCYC | 2 cut(s) | 219, 271 |
| Eco47I | GGWCC | 1 cut(s) | 513 |
| Eco53kI | GAGCTC | 1 cut(s) | 269 |
| Eco57I | CTGAAG | 3 cut(s) | 54, 210, 945 |
| Eco88I | CYCGRG | 1 cut(s) | 563 |
| EcoICRI | GAGCTC | 1 cut(s) | 269 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 629 |
| EcoO109I | RGGNCCY | 1 cut(s) | 421 |
| EcoRII | CCWGG | 3 cut(s) | 9, 206, 522 |
| EcoT38I | GRGCYC | 2 cut(s) | 219, 271 |
| Esp3I | CGTCTC | 1 cut(s) | 566 |
| FaeI | CATG | 7 cut(s) | 29, 98, 107, 572, 905, 921, 987 |
| FatI | CATG | 7 cut(s) | 25, 94, 103, 568, 901, 917, 983 |
| FauI | CCCGC | 1 cut(s) | 31 |
| FokI | GGATG | 4 cut(s) | 171, 224, 227, 244 |
| FriOI | GRGCYC | 2 cut(s) | 219, 271 |
| FspBI | CTAG | 6 cut(s) | 396, 584, 626, 678, 788, 927 |
| FspI | TGCGCA | 1 cut(s) | 390 |
| GlaI | GCGC | 1 cut(s) | 390 |
| GsuI | CTGGAG | 2 cut(s) | 105, 293 |
| HaeIII | GGCC | 6 cut(s) | 77, 182, 206, 423, 557, 647 |
| HapII | CCGG | 3 cut(s) | 62, 68, 251 |
| HhaI | GCGC | 1 cut(s) | 391 |
| Hin1II | CATG | 7 cut(s) | 29, 98, 107, 572, 905, 921, 987 |
| Hin6I | GCGC | 1 cut(s) | 389 |
| HinP1I | GCGC | 1 cut(s) | 389 |
| HinfI | GANTC | 2 cut(s) | 232, 784 |
| HpaII | CCGG | 3 cut(s) | 62, 68, 251 |
| HphI | GGTGA | 3 cut(s) | 61, 316, 562 |
| Hpy166II | GTNNAC | 1 cut(s) | 324 |
| Hpy188I | TCNGA | 2 cut(s) | 231, 513 |
| Hpy8I | GTNNAC | 1 cut(s) | 324 |
| HpyAV | CCTTC | 4 cut(s) | 38, 153, 781, 969 |
| HpyCH4IV | ACGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 3 cut(s) | 257, 671, 706 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 230, 312, 318, 630 |
| HpySE526I | ACGT | 1 cut(s) | 223 |
| Hsp92II | CATG | 7 cut(s) | 29, 98, 107, 572, 905, 921, 987 |
| HspAI | GCGC | 1 cut(s) | 389 |
| Kzo9I | GATC | 3 cut(s) | 6, 363, 492 |
| LguI | GCTCTTC | 1 cut(s) | 960 |
| LmnI | GCTCC | 6 cut(s) | 13, 34, 64, 88, 124, 222 |
| Lsp1109I | GCAGC | 7 cut(s) | 97, 100, 103, 364, 652, 655, 937 |
| LweI | GCATC | 2 cut(s) | 266, 664 |
| MaeI | CTAG | 6 cut(s) | 396, 584, 626, 678, 788, 927 |
| MaeII | ACGT | 1 cut(s) | 223 |
| MaeIII | GTNAC | 2 cut(s) | 550, 725 |
| MalI | GATC | 3 cut(s) | 8, 365, 494 |
| MboI | GATC | 3 cut(s) | 6, 363, 492 |
| MboII | GAAGA | 8 cut(s) | 218, 281, 344, 500, 749, 947, 967, 970 |
| MhlI | GDGCHC | 2 cut(s) | 219, 271 |
| MluCI | AATT | 5 cut(s) | 539, 709, 716, 765, 796 |
| MluI | ACGCGT | 1 cut(s) | 756 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| MnlI | CCTC | 9 cut(s) | 102, 150, 196, 434, 454, 485, 565, 740, 947 |
| MseI | TTAA | 3 cut(s) | 281, 542, 855 |
| MspA1I | CMGCKG | 1 cut(s) | 110 |
| MspI | CCGG | 3 cut(s) | 62, 68, 251 |
| MspR9I | CCNGG | 4 cut(s) | 11, 208, 252, 524 |
| Mva1269I | GAATGC | 2 cut(s) | 58, 791 |
| MvaI | CCWGG | 3 cut(s) | 11, 208, 524 |
| MvnI | CGCG | 5 cut(s) | 168, 450, 639, 758, 851 |
| NciI | CCSGG | 1 cut(s) | 252 |
| NdeII | GATC | 3 cut(s) | 6, 363, 492 |
| NlaIII | CATG | 7 cut(s) | 29, 98, 107, 572, 905, 921, 987 |
| NlaIV | GGNNCC | 8 cut(s) | 15, 66, 78, 90, 218, 422, 515, 576 |
| NmuCI | GTSAC | 1 cut(s) | 550 |
| NruI | TCGCGA | 2 cut(s) | 450, 639 |
| NsbI | TGCGCA | 1 cut(s) | 390 |
| PaeR7I | CTCGAG | 1 cut(s) | 563 |
| PagI | TCATGA | 1 cut(s) | 94 |
| PciSI | GCTCTTC | 1 cut(s) | 960 |
| PctI | GAATGC | 2 cut(s) | 58, 791 |
| PfeI | GAWTC | 1 cut(s) | 784 |
| PfoI | TCCNGGA | 2 cut(s) | 9, 522 |
| PleI | GAGTC | 1 cut(s) | 240 |
| PpsI | GAGTC | 1 cut(s) | 240 |
| Psp124BI | GAGCTC | 1 cut(s) | 271 |
| Psp6I | CCWGG | 3 cut(s) | 9, 206, 522 |
| PspGI | CCWGG | 3 cut(s) | 9, 206, 522 |
| PspN4I | GGNNCC | 8 cut(s) | 15, 66, 78, 90, 218, 422, 515, 576 |
| PspPI | GGNCC | 6 cut(s) | 76, 181, 421, 513, 556, 646 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 865, 897 |
| PstI | CTGCAG | 1 cut(s) | 673 |
| RruI | TCGCGA | 2 cut(s) | 450, 639 |
| RsaI | GTAC | 3 cut(s) | 171, 832, 889 |
| RsaNI | GTAC | 3 cut(s) | 170, 831, 888 |
| SacI | GAGCTC | 1 cut(s) | 271 |
| SapI | GCTCTTC | 1 cut(s) | 960 |
| SaqAI | TTAA | 3 cut(s) | 281, 542, 855 |
| Sau3AI | GATC | 3 cut(s) | 6, 363, 492 |
| Sau96I | GGNCC | 6 cut(s) | 76, 181, 421, 513, 556, 646 |
| ScaI | AGTACT | 1 cut(s) | 832 |
| SchI | GAGTC | 1 cut(s) | 241 |
| ScrFI | CCNGG | 4 cut(s) | 11, 208, 252, 524 |
| SduI | GDGCHC | 2 cut(s) | 219, 271 |
| SfaNI | GCATC | 2 cut(s) | 266, 664 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| Sfr274I | CTCGAG | 1 cut(s) | 563 |
| SinI | GGWCC | 1 cut(s) | 513 |
| SlaI | CTCGAG | 1 cut(s) | 563 |
| SmlI | CTYRAG | 2 cut(s) | 405, 563 |
| SmoI | CTYRAG | 2 cut(s) | 405, 563 |
| Sse9I | AATT | 5 cut(s) | 539, 709, 716, 765, 796 |
| SsiI | CCGC | 9 cut(s) | 38, 74, 108, 261, 381, 490, 548, 644, 851 |
| SspMI | CTAG | 6 cut(s) | 396, 584, 626, 678, 788, 927 |
| SstI | GAGCTC | 1 cut(s) | 271 |
| StyD4I | CCNGG | 4 cut(s) | 9, 206, 250, 522 |
| TaiI | ACGT | 1 cut(s) | 226 |
| TaqI | TCGA | 1 cut(s) | 564 |
| TasI | AATT | 5 cut(s) | 539, 709, 716, 765, 796 |
| TatI | WGTACW | 2 cut(s) | 830, 887 |
| TauI | GCSGC | 4 cut(s) | 77, 110, 383, 647 |
| TfiI | GAWTC | 1 cut(s) | 784 |
| Tru1I | TTAA | 3 cut(s) | 281, 542, 855 |
| Tru9I | TTAA | 3 cut(s) | 281, 542, 855 |
| TscAI | CASTG | 3 cut(s) | 135, 316, 391 |
| TseFI | GTSAC | 1 cut(s) | 550 |
| TseI | GCWGC | 7 cut(s) | 110, 113, 116, 377, 665, 668, 950 |
| Tsp45I | GTSAC | 1 cut(s) | 550 |
| TspDTI | ATGAA | 5 cut(s) | 111, 281, 384, 763, 918 |
| TspGWI | ACGGA | 1 cut(s) | 376 |
| TspRI | CASTG | 3 cut(s) | 135, 316, 391 |
| VpaK11BI | GGWCC | 1 cut(s) | 513 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 629 |
| XbaI | TCTAGA | 1 cut(s) | 926 |
| XhoI | CTCGAG | 1 cut(s) | 563 |
| XspI | CTAG | 6 cut(s) | 396, 584, 626, 678, 788, 927 |
| ZrmI | AGTACT | 1 cut(s) | 832 |