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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 516 |
| AccII | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| AciI | CCGC | 6 cut(s) | 71, 139, 242, 313, 488, 561 |
| AclWI | GGATC | 3 cut(s) | 34, 47, 400 |
| AcsI | RAATTY | 1 cut(s) | 21 |
| AfaI | GTAC | 4 cut(s) | 152, 225, 417, 569 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 479, 554 |
| AgsI | TTSAA | 2 cut(s) | 59, 254 |
| AjnI | CCWGG | 1 cut(s) | 455 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 2 cut(s) | 118, 367 |
| AluI | AGCT | 2 cut(s) | 118, 367 |
| AlwI | GGATC | 3 cut(s) | 34, 47, 400 |
| AoxI | GGCC | 4 cut(s) | 28, 482, 531, 558 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| ApoI | RAATTY | 1 cut(s) | 21 |
| AspLEI | GCGC | 3 cut(s) | 317, 462, 511 |
| AspS9I | GGNCC | 5 cut(s) | 29, 470, 482, 531, 558 |
| AsuC2I | CCSGG | 1 cut(s) | 83 |
| AvaII | GGWCC | 1 cut(s) | 470 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BauI | CACGAG | 1 cut(s) | 295 |
| BbvI | GCAGC | 1 cut(s) | 331 |
| BccI | CCATC | 2 cut(s) | 548, 573 |
| BciT130I | CCWGG | 1 cut(s) | 457 |
| BcnI | CCSGG | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 302 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BisI | GCNGC | 4 cut(s) | 139, 313, 345, 561 |
| BlpI | GCTNAGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 4 cut(s) | 140, 314, 346, 562 |
| BmcAI | AGTACT | 2 cut(s) | 225, 569 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 457 |
| Bme18I | GGWCC | 1 cut(s) | 470 |
| BmgT120I | GGNCC | 5 cut(s) | 29, 470, 482, 531, 558 |
| BmiI | GGNNCC | 4 cut(s) | 41, 263, 275, 559 |
| BmrFI | CCNGG | 2 cut(s) | 83, 457 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 1 cut(s) | 424 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 134 |
| BpuMI | CCSGG | 1 cut(s) | 83 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 479, 554 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| Bse1I | ACTGG | 1 cut(s) | 533 |
| BseBI | CCWGG | 1 cut(s) | 457 |
| BseGI | GGATG | 3 cut(s) | 90, 91, 155 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 479, 554 |
| BseMII | CTCAG | 4 cut(s) | 148, 342, 370, 555 |
| BseNI | ACTGG | 1 cut(s) | 533 |
| BseXI | GCAGC | 1 cut(s) | 331 |
| Bsh1236I | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| BshFI | GGCC | 4 cut(s) | 30, 484, 533, 560 |
| BsiSI | CCGG | 2 cut(s) | 82, 107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 479, 554 |
| BsnI | GGCC | 4 cut(s) | 30, 484, 533, 560 |
| Bsp143I | GATC | 4 cut(s) | 39, 289, 318, 405 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 134 |
| BspACI | CCGC | 6 cut(s) | 71, 139, 242, 313, 488, 561 |
| BspANI | GGCC | 4 cut(s) | 30, 484, 533, 560 |
| BspCNI | CTCAG | 4 cut(s) | 147, 341, 369, 556 |
| BspFNI | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| BspLI | GGNNCC | 4 cut(s) | 41, 263, 275, 559 |
| BspPI | GGATC | 3 cut(s) | 34, 47, 400 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BsrI | ACTGG | 1 cut(s) | 533 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssMI | GATC | 4 cut(s) | 39, 289, 318, 405 |
| BssSI | CACGAG | 1 cut(s) | 295 |
| Bst2BI | CACGAG | 1 cut(s) | 295 |
| Bst2UI | CCWGG | 1 cut(s) | 457 |
| Bst4CI | ACNGT | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 1 cut(s) | 342 |
| BstDEI | CTNAG | 6 cut(s) | 134, 220, 227, 328, 356, 564 |
| BstF5I | GGATG | 3 cut(s) | 90, 91, 155 |
| BstFNI | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| BstHHI | GCGC | 3 cut(s) | 317, 462, 511 |
| BstKTI | GATC | 4 cut(s) | 42, 292, 321, 408 |
| BstMBI | GATC | 4 cut(s) | 39, 289, 318, 405 |
| BstNI | CCWGG | 1 cut(s) | 457 |
| BstSCI | CCNGG | 2 cut(s) | 81, 455 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstUI | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| BstV1I | GCAGC | 1 cut(s) | 331 |
| BstX2I | RGATCY | 1 cut(s) | 39 |
| BstYI | RGATCY | 1 cut(s) | 39 |
| BsuRI | GGCC | 4 cut(s) | 30, 484, 533, 560 |
| BtgZI | GCGATG | 1 cut(s) | 592 |
| BtsCI | GGATG | 3 cut(s) | 90, 91, 155 |
| Cac8I | GCNNGC | 1 cut(s) | 342 |
| CfoI | GCGC | 3 cut(s) | 317, 462, 511 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 5 cut(s) | 29, 470, 482, 531, 558 |
| Csp6I | GTAC | 4 cut(s) | 151, 224, 416, 568 |
| CviAII | CATG | 2 cut(s) | 257, 269 |
| CviQI | GTAC | 4 cut(s) | 151, 224, 416, 568 |
| DdeI | CTNAG | 6 cut(s) | 134, 220, 227, 328, 356, 564 |
| DpnI | GATC | 4 cut(s) | 41, 291, 320, 407 |
| DpnII | GATC | 4 cut(s) | 39, 289, 318, 405 |
| EciI | GGCGGA | 2 cut(s) | 231, 477 |
| Eco47I | GGWCC | 1 cut(s) | 470 |
| EcoRII | CCWGG | 1 cut(s) | 455 |
| FaeI | CATG | 2 cut(s) | 260, 272 |
| FaiI | YATR | 8 cut(s) | 184, 258, 270, 285, 430, 432, 503, 573 |
| FatI | CATG | 2 cut(s) | 256, 268 |
| FblI | GTMKAC | 1 cut(s) | 516 |
| Fnu4HI | GCNGC | 4 cut(s) | 139, 313, 345, 561 |
| FokI | GGATG | 3 cut(s) | 77, 98, 142 |
| Fsp4HI | GCNGC | 4 cut(s) | 139, 313, 345, 561 |
| FspBI | CTAG | 1 cut(s) | 302 |
| GlaI | GCGC | 3 cut(s) | 316, 461, 510 |
| GluI | GCNGC | 4 cut(s) | 139, 313, 345, 561 |
| HaeIII | GGCC | 4 cut(s) | 30, 484, 533, 560 |
| HapII | CCGG | 2 cut(s) | 82, 107 |
| HhaI | GCGC | 3 cut(s) | 317, 462, 511 |
| Hin1II | CATG | 2 cut(s) | 260, 272 |
| Hin6I | GCGC | 3 cut(s) | 315, 460, 509 |
| HinP1I | GCGC | 3 cut(s) | 315, 460, 509 |
| HincII | GTYRAC | 1 cut(s) | 517 |
| HindII | GTYRAC | 1 cut(s) | 517 |
| HinfI | GANTC | 1 cut(s) | 55 |
| HpaII | CCGG | 2 cut(s) | 82, 107 |
| Hpy166II | GTNNAC | 2 cut(s) | 153, 517 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 331, 589 |
| Hpy188III | TCNNGA | 2 cut(s) | 52, 200 |
| Hpy8I | GTNNAC | 2 cut(s) | 153, 517 |
| HpyAV | CCTTC | 2 cut(s) | 275, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 6 cut(s) | 134, 220, 227, 328, 356, 564 |
| Hsp92II | CATG | 2 cut(s) | 260, 272 |
| HspAI | GCGC | 3 cut(s) | 315, 460, 509 |
| Kzo9I | GATC | 4 cut(s) | 39, 289, 318, 405 |
| Lsp1109I | GCAGC | 1 cut(s) | 331 |
| LweI | GCATC | 1 cut(s) | 424 |
| MaeI | CTAG | 1 cut(s) | 302 |
| MaeIII | GTNAC | 1 cut(s) | 359 |
| MalI | GATC | 4 cut(s) | 41, 291, 320, 407 |
| MboI | GATC | 4 cut(s) | 39, 289, 318, 405 |
| MboII | GAAGA | 2 cut(s) | 185, 188 |
| MflI | RGATCY | 1 cut(s) | 39 |
| MluCI | AATT | 5 cut(s) | 21, 410, 419, 465, 601 |
| MnlI | CCTC | 4 cut(s) | 255, 495, 583, 603 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 563 |
| MspI | CCGG | 2 cut(s) | 82, 107 |
| MspR9I | CCNGG | 2 cut(s) | 83, 457 |
| MvaI | CCWGG | 1 cut(s) | 457 |
| MvnI | CGCG | 4 cut(s) | 141, 315, 317, 509 |
| NciI | CCSGG | 1 cut(s) | 83 |
| NdeII | GATC | 4 cut(s) | 39, 289, 318, 405 |
| NlaIII | CATG | 2 cut(s) | 260, 272 |
| NlaIV | GGNNCC | 4 cut(s) | 41, 263, 275, 559 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 513 |
| PfeI | GAWTC | 1 cut(s) | 55 |
| PflFI | GACNNNGTC | 1 cut(s) | 548 |
| PkrI | GCNGC | 4 cut(s) | 140, 314, 346, 562 |
| Psp6I | CCWGG | 1 cut(s) | 455 |
| PspGI | CCWGG | 1 cut(s) | 455 |
| PspN4I | GGNNCC | 4 cut(s) | 41, 263, 275, 559 |
| PspPI | GGNCC | 5 cut(s) | 29, 470, 482, 531, 558 |
| PsuI | RGATCY | 1 cut(s) | 39 |
| PsyI | GACNNNGTC | 1 cut(s) | 548 |
| RsaI | GTAC | 4 cut(s) | 152, 225, 417, 569 |
| RsaNI | GTAC | 4 cut(s) | 151, 224, 416, 568 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SalI | GTCGAC | 1 cut(s) | 515 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| SatI | GCNGC | 4 cut(s) | 139, 313, 345, 561 |
| Sau3AI | GATC | 4 cut(s) | 39, 289, 318, 405 |
| Sau96I | GGNCC | 5 cut(s) | 29, 470, 482, 531, 558 |
| ScaI | AGTACT | 2 cut(s) | 225, 569 |
| ScrFI | CCNGG | 2 cut(s) | 83, 457 |
| SetI | ASST | 8 cut(s) | 65, 120, 152, 166, 369, 522, 594, 614 |
| SfaNI | GCATC | 1 cut(s) | 424 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SinI | GGWCC | 1 cut(s) | 470 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| Sse9I | AATT | 5 cut(s) | 21, 410, 419, 465, 601 |
| SsiI | CCGC | 6 cut(s) | 71, 139, 242, 313, 488, 561 |
| SspMI | CTAG | 1 cut(s) | 302 |
| StyD4I | CCNGG | 2 cut(s) | 81, 455 |
| TaaI | ACNGT | 1 cut(s) | 99 |
| TaqI | TCGA | 2 cut(s) | 516, 552 |
| TasI | AATT | 5 cut(s) | 21, 410, 419, 465, 601 |
| TatI | WGTACW | 3 cut(s) | 223, 415, 567 |
| TauI | GCSGC | 3 cut(s) | 141, 315, 563 |
| TfiI | GAWTC | 1 cut(s) | 55 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TseI | GCWGC | 1 cut(s) | 344 |
| TspDTI | ATGAA | 2 cut(s) | 257, 366 |
| Tth111I | GACNNNGTC | 1 cut(s) | 548 |
| VpaK11BI | GGWCC | 1 cut(s) | 470 |
| XapI | RAATTY | 1 cut(s) | 21 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 14 |
| XmiI | GTMKAC | 1 cut(s) | 516 |
| XspI | CTAG | 1 cut(s) | 302 |
| ZrmI | AGTACT | 2 cut(s) | 225, 569 |