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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 163 |
| AccII | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| AciI | CCGC | 6 cut(s) | 230, 291, 434, 436, 576, 579 |
| AcoI | YGGCCR | 1 cut(s) | 361 |
| AfaI | GTAC | 1 cut(s) | 497 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 236, 253, 327, 341, 435 |
| AgsI | TTSAA | 1 cut(s) | 390 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 485, 517 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| Alw21I | GWGCWC | 4 cut(s) | 88, 244, 418, 465 |
| Alw26I | GTCTC | 2 cut(s) | 109, 283 |
| AoxI | GGCC | 2 cut(s) | 361, 444 |
| ApeKI | GCWGC | 1 cut(s) | 294 |
| AspLEI | GCGC | 2 cut(s) | 234, 263 |
| AspS9I | GGNCC | 3 cut(s) | 158, 545, 568 |
| AsuHPI | GGTGA | 3 cut(s) | 310, 356, 370 |
| AvaII | GGWCC | 3 cut(s) | 158, 545, 568 |
| BalI | TGGCCA | 1 cut(s) | 363 |
| BanI | GGYRCC | 1 cut(s) | 163 |
| BanII | GRGCYC | 2 cut(s) | 244, 351 |
| BauI | CACGAG | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 4 cut(s) | 88, 244, 418, 465 |
| BbvI | GCAGC | 1 cut(s) | 306 |
| BccI | CCATC | 3 cut(s) | 185, 335, 344 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BcoDI | GTCTC | 2 cut(s) | 109, 283 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BisI | GCNGC | 4 cut(s) | 292, 295, 576, 579 |
| BlsI | GCNGC | 4 cut(s) | 293, 296, 577, 580 |
| BmcAI | AGTACT | 1 cut(s) | 497 |
| Bme1390I | CCNGG | 1 cut(s) | 248 |
| Bme18I | GGWCC | 3 cut(s) | 158, 545, 568 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 545, 568 |
| BmiI | GGNNCC | 5 cut(s) | 6, 73, 134, 159, 165 |
| BmrFI | CCNGG | 1 cut(s) | 248 |
| BmrI | ACTGGG | 1 cut(s) | 336 |
| BmuI | ACTGGG | 1 cut(s) | 336 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 339 |
| BsaI | GGTCTC | 1 cut(s) | 109 |
| BsaJI | CCNNGG | 2 cut(s) | 434, 548 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 485, 515 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 66, 67, 236, 253, 327, 341, 435 |
| Bse1I | ACTGG | 4 cut(s) | 75, 331, 503, 547 |
| Bse3DI | GCAATG | 1 cut(s) | 570 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseCI | ATCGAT | 2 cut(s) | 27, 339 |
| BseDI | CCNNGG | 2 cut(s) | 434, 548 |
| BseGI | GGATG | 2 cut(s) | 96, 177 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 236, 253, 327, 341, 435 |
| BseMI | GCAATG | 1 cut(s) | 570 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseNI | ACTGG | 4 cut(s) | 75, 331, 503, 547 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseXI | GCAGC | 1 cut(s) | 306 |
| BseYI | CCCAGC | 1 cut(s) | 154 |
| BsgI | GTGCAG | 1 cut(s) | 505 |
| Bsh1236I | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| BshFI | GGCC | 2 cut(s) | 363, 446 |
| BshNI | GGYRCC | 1 cut(s) | 163 |
| BshVI | ATCGAT | 2 cut(s) | 27, 339 |
| BsiHKAI | GWGCWC | 4 cut(s) | 88, 244, 418, 465 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 1 cut(s) | 382 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 66, 67, 236, 253, 327, 341, 435 |
| BsmAI | GTCTC | 2 cut(s) | 109, 283 |
| BsmFI | GGGAC | 1 cut(s) | 382 |
| BsnI | GGCC | 2 cut(s) | 363, 446 |
| Bso31I | GGTCTC | 1 cut(s) | 109 |
| Bsp1286I | GDGCHC | 5 cut(s) | 88, 244, 351, 418, 465 |
| Bsp143I | GATC | 2 cut(s) | 28, 54 |
| BspACI | CCGC | 6 cut(s) | 230, 291, 434, 436, 576, 579 |
| BspANI | GGCC | 2 cut(s) | 363, 446 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspDI | ATCGAT | 2 cut(s) | 27, 339 |
| BspFNI | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| BspLI | GGNNCC | 5 cut(s) | 6, 73, 134, 159, 165 |
| BspT107I | GGYRCC | 1 cut(s) | 163 |
| BspTNI | GGTCTC | 1 cut(s) | 109 |
| BsrDI | GCAATG | 1 cut(s) | 570 |
| BsrI | ACTGG | 4 cut(s) | 75, 331, 503, 547 |
| BssECI | CCNNGG | 2 cut(s) | 434, 548 |
| BssMI | GATC | 2 cut(s) | 28, 54 |
| BssSI | CACGAG | 1 cut(s) | 168 |
| BssT1I | CCWWGG | 1 cut(s) | 548 |
| Bst2BI | CACGAG | 1 cut(s) | 168 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 1 cut(s) | 422 |
| BstC8I | GCNNGC | 1 cut(s) | 444 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstDSI | CCRYGG | 1 cut(s) | 434 |
| BstF5I | GGATG | 2 cut(s) | 96, 177 |
| BstFNI | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| BstHHI | GCGC | 2 cut(s) | 234, 263 |
| BstKTI | GATC | 2 cut(s) | 31, 57 |
| BstMAI | GTCTC | 2 cut(s) | 109, 283 |
| BstMBI | GATC | 2 cut(s) | 28, 54 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 130, 355 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstSCI | CCNGG | 1 cut(s) | 246 |
| BstUI | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| BstV1I | GCAGC | 1 cut(s) | 306 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 339 |
| BsuRI | GGCC | 2 cut(s) | 363, 446 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 339 |
| BtgI | CCRYGG | 1 cut(s) | 434 |
| BtsCI | GGATG | 2 cut(s) | 96, 177 |
| BtsI | GCAGTG | 1 cut(s) | 418 |
| BtsIMutI | CAGTG | 2 cut(s) | 418, 540 |
| Cac8I | GCNNGC | 1 cut(s) | 444 |
| CfoI | GCGC | 2 cut(s) | 234, 263 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 545, 568 |
| Cfr42I | CCGCGG | 1 cut(s) | 437 |
| ClaI | ATCGAT | 2 cut(s) | 27, 339 |
| Csp6I | GTAC | 1 cut(s) | 496 |
| CviAII | CATG | 3 cut(s) | 146, 359, 394 |
| CviJI | RGCY | 9 cut(s) | 5, 133, 154, 207, 242, 349, 363, 442, 446 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 133, 154, 207, 242, 349, 363, 442, 446 |
| CviQI | GTAC | 1 cut(s) | 496 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| DpnI | GATC | 2 cut(s) | 30, 56 |
| DpnII | GATC | 2 cut(s) | 28, 54 |
| EaeI | YGGCCR | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 1 cut(s) | 242 |
| Eco130I | CCWWGG | 1 cut(s) | 548 |
| Eco24I | GRGCYC | 2 cut(s) | 244, 351 |
| Eco31I | GGTCTC | 1 cut(s) | 109 |
| Eco32I | GATATC | 1 cut(s) | 313 |
| Eco47I | GGWCC | 3 cut(s) | 158, 545, 568 |
| Eco53kI | GAGCTC | 1 cut(s) | 242 |
| EcoICRI | GAGCTC | 1 cut(s) | 242 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoRV | GATATC | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 1 cut(s) | 548 |
| EcoT38I | GRGCYC | 2 cut(s) | 244, 351 |
| ErhI | CCWWGG | 1 cut(s) | 548 |
| FaeI | CATG | 3 cut(s) | 149, 362, 397 |
| FaiI | YATR | 3 cut(s) | 147, 360, 395 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 500, 532 |
| FaqI | GGGAC | 1 cut(s) | 382 |
| FatI | CATG | 3 cut(s) | 145, 358, 393 |
| Fnu4HI | GCNGC | 4 cut(s) | 292, 295, 576, 579 |
| FokI | GGATG | 2 cut(s) | 83, 164 |
| FriOI | GRGCYC | 2 cut(s) | 244, 351 |
| Fsp4HI | GCNGC | 4 cut(s) | 292, 295, 576, 579 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GlaI | GCGC | 2 cut(s) | 233, 262 |
| GluI | GCNGC | 4 cut(s) | 292, 295, 576, 579 |
| GsaI | CCCAGC | 1 cut(s) | 158 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeIII | GGCC | 2 cut(s) | 363, 446 |
| HapII | CCGG | 1 cut(s) | 161 |
| HhaI | GCGC | 2 cut(s) | 234, 263 |
| Hin1II | CATG | 3 cut(s) | 149, 362, 397 |
| Hin6I | GCGC | 2 cut(s) | 232, 261 |
| HinP1I | GCGC | 2 cut(s) | 232, 261 |
| HinfI | GANTC | 1 cut(s) | 173 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 3 cut(s) | 310, 356, 370 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 112, 255, 491 |
| Hpy99I | CGWCG | 1 cut(s) | 239 |
| HpyCH4III | ACNGT | 1 cut(s) | 422 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 3 cut(s) | 358, 507, 522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 130, 355 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| Hsp92II | CATG | 3 cut(s) | 149, 362, 397 |
| HspAI | GCGC | 2 cut(s) | 232, 261 |
| KspI | CCGCGG | 1 cut(s) | 437 |
| Kzo9I | GATC | 2 cut(s) | 28, 54 |
| LmnI | GCTCC | 4 cut(s) | 10, 91, 138, 239 |
| Lsp1109I | GCAGC | 1 cut(s) | 306 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MaeIII | GTNAC | 2 cut(s) | 92, 376 |
| MalI | GATC | 2 cut(s) | 30, 56 |
| MboI | GATC | 2 cut(s) | 28, 54 |
| MboII | GAAGA | 2 cut(s) | 25, 508 |
| MhlI | GDGCHC | 5 cut(s) | 88, 244, 351, 418, 465 |
| MlsI | TGGCCA | 1 cut(s) | 363 |
| MluCI | AATT | 3 cut(s) | 365, 402, 480 |
| MluNI | TGGCCA | 1 cut(s) | 363 |
| MnlI | CCTC | 7 cut(s) | 28, 31, 129, 209, 326, 535, 581 |
| Mox20I | TGGCCA | 1 cut(s) | 363 |
| MscI | TGGCCA | 1 cut(s) | 363 |
| Msp20I | TGGCCA | 1 cut(s) | 363 |
| MspA1I | CMGCKG | 1 cut(s) | 436 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 248 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| MvnI | CGCG | 5 cut(s) | 232, 234, 291, 436, 581 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 130, 355 |
| NdeII | GATC | 2 cut(s) | 28, 54 |
| NlaIII | CATG | 3 cut(s) | 149, 362, 397 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 73, 134, 159, 165 |
| NmuCI | GTSAC | 2 cut(s) | 92, 376 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 173 |
| PflFI | GACNNNGTC | 1 cut(s) | 374 |
| PkrI | GCNGC | 4 cut(s) | 293, 296, 577, 580 |
| Psp124BI | GAGCTC | 1 cut(s) | 244 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspFI | CCCAGC | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 73, 134, 159, 165 |
| PspPI | GGNCC | 3 cut(s) | 158, 545, 568 |
| PsyI | GACNNNGTC | 1 cut(s) | 374 |
| RsaI | GTAC | 1 cut(s) | 497 |
| RsaNI | GTAC | 1 cut(s) | 496 |
| SacI | GAGCTC | 1 cut(s) | 244 |
| SacII | CCGCGG | 1 cut(s) | 437 |
| SatI | GCNGC | 4 cut(s) | 292, 295, 576, 579 |
| Sau3AI | GATC | 2 cut(s) | 28, 54 |
| Sau96I | GGNCC | 3 cut(s) | 158, 545, 568 |
| ScaI | AGTACT | 1 cut(s) | 497 |
| ScrFI | CCNGG | 1 cut(s) | 248 |
| SduI | GDGCHC | 5 cut(s) | 88, 244, 351, 418, 465 |
| SetI | ASST | 6 cut(s) | 121, 192, 244, 305, 383, 527 |
| Sfr303I | CCGCGG | 1 cut(s) | 437 |
| SgrBI | CCGCGG | 1 cut(s) | 437 |
| SinI | GGWCC | 3 cut(s) | 158, 545, 568 |
| Sse9I | AATT | 3 cut(s) | 365, 402, 480 |
| SsiI | CCGC | 6 cut(s) | 230, 291, 434, 436, 576, 579 |
| SspMI | CTAG | 1 cut(s) | 308 |
| SstI | GAGCTC | 1 cut(s) | 244 |
| StyD4I | CCNGG | 1 cut(s) | 246 |
| StyI | CCWWGG | 1 cut(s) | 548 |
| TaaI | ACNGT | 1 cut(s) | 422 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TaqI | TCGA | 4 cut(s) | 27, 220, 339, 369 |
| TasI | AATT | 3 cut(s) | 365, 402, 480 |
| TatI | WGTACW | 1 cut(s) | 495 |
| TauI | GCSGC | 3 cut(s) | 294, 578, 581 |
| TfiI | GAWTC | 1 cut(s) | 173 |
| TscAI | CASTG | 2 cut(s) | 418, 547 |
| TseFI | GTSAC | 2 cut(s) | 92, 376 |
| TseI | GCWGC | 1 cut(s) | 294 |
| Tsp45I | GTSAC | 2 cut(s) | 92, 376 |
| TspDTI | ATGAA | 1 cut(s) | 502 |
| TspGWI | ACGGA | 1 cut(s) | 252 |
| TspRI | CASTG | 2 cut(s) | 418, 547 |
| Tth111I | GACNNNGTC | 1 cut(s) | 374 |
| VpaK11BI | GGWCC | 3 cut(s) | 158, 545, 568 |
| XspI | CTAG | 1 cut(s) | 308 |
| ZrmI | AGTACT | 1 cut(s) | 497 |