Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 269 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 71 |
| AciI | CCGC | 3 cut(s) | 167, 261, 369 |
| AfeI | AGCGCT | 1 cut(s) | 526 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 323, 452 |
| AjnI | CCWGG | 2 cut(s) | 65, 149 |
| AluBI | AGCT | 1 cut(s) | 56 |
| AluI | AGCT | 1 cut(s) | 56 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 1 cut(s) | 544 |
| Aor51HI | AGCGCT | 1 cut(s) | 526 |
| AoxI | GGCC | 4 cut(s) | 157, 221, 439, 507 |
| ApeKI | GCWGC | 4 cut(s) | 56, 275, 344, 522 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 377, 409 |
| AspLEI | GCGC | 1 cut(s) | 527 |
| AspS9I | GGNCC | 4 cut(s) | 63, 158, 222, 508 |
| AsuC2I | CCSGG | 3 cut(s) | 182, 249, 569 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 277 |
| AvaI | CYCGRG | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 1 cut(s) | 74 |
| BanI | GGYRCC | 2 cut(s) | 4, 71 |
| BanII | GRGCYC | 1 cut(s) | 462 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvI | GCAGC | 4 cut(s) | 43, 287, 331, 534 |
| BccI | CCATC | 5 cut(s) | 200, 318, 440, 455, 543 |
| BceAI | ACGGC | 1 cut(s) | 469 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 61, 72, 95 |
| BciT130I | CCWGG | 2 cut(s) | 67, 151 |
| BcnI | CCSGG | 3 cut(s) | 182, 249, 569 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BfoI | RGCGCY | 1 cut(s) | 528 |
| BfuAI | ACCTGC | 1 cut(s) | 269 |
| BisI | GCNGC | 4 cut(s) | 57, 276, 345, 523 |
| BlsI | GCNGC | 4 cut(s) | 58, 277, 346, 524 |
| Bme1390I | CCNGG | 5 cut(s) | 67, 151, 182, 249, 569 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeT110I | CYCGRG | 1 cut(s) | 544 |
| BmgT120I | GGNCC | 4 cut(s) | 63, 158, 222, 508 |
| BmiI | GGNNCC | 2 cut(s) | 6, 73 |
| BmrFI | CCNGG | 5 cut(s) | 67, 151, 182, 249, 569 |
| BmsI | GCATC | 2 cut(s) | 87, 178 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 397, 429 |
| BpuMI | CCSGG | 3 cut(s) | 182, 249, 569 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 504 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 323, 452 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 2 cut(s) | 230, 442 |
| BseBI | CCWGG | 2 cut(s) | 67, 151 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 66, 504 |
| BseGI | GGATG | 2 cut(s) | 190, 423 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 323, 452 |
| BseNI | ACTGG | 2 cut(s) | 230, 442 |
| BseSI | GKGCMC | 1 cut(s) | 74 |
| BseXI | GCAGC | 4 cut(s) | 43, 287, 331, 534 |
| BseYI | CCCAGC | 2 cut(s) | 160, 510 |
| Bsh1285I | CGRYCG | 2 cut(s) | 265, 585 |
| BshFI | GGCC | 4 cut(s) | 159, 223, 441, 509 |
| BshNI | GGYRCC | 2 cut(s) | 4, 71 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 2 cut(s) | 265, 585 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiHKCI | CYCGRG | 1 cut(s) | 544 |
| BsiSI | CCGG | 4 cut(s) | 182, 220, 249, 568 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 323, 452 |
| BsmI | GAATGC | 2 cut(s) | 90, 277 |
| BsnI | GGCC | 4 cut(s) | 159, 223, 441, 509 |
| BsoBI | CYCGRG | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 3 cut(s) | 74, 88, 462 |
| Bsp143I | GATC | 2 cut(s) | 28, 582 |
| Bsp19I | CCATGG | 1 cut(s) | 504 |
| BspACI | CCGC | 3 cut(s) | 167, 261, 369 |
| BspANI | GGCC | 4 cut(s) | 159, 223, 441, 509 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspLI | GGNNCC | 2 cut(s) | 6, 73 |
| BspMI | ACCTGC | 1 cut(s) | 269 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 71 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 2 cut(s) | 230, 442 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssECI | CCNNGG | 2 cut(s) | 66, 504 |
| BssMI | GATC | 2 cut(s) | 28, 582 |
| BssT1I | CCWWGG | 1 cut(s) | 504 |
| Bst2UI | CCWGG | 2 cut(s) | 67, 151 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 4 cut(s) | 88, 221, 335, 458 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 504 |
| BstF5I | GGATG | 2 cut(s) | 190, 423 |
| BstH2I | RGCGCY | 1 cut(s) | 528 |
| BstHHI | GCGC | 1 cut(s) | 527 |
| BstKTI | GATC | 2 cut(s) | 31, 585 |
| BstMBI | GATC | 2 cut(s) | 28, 582 |
| BstMCI | CGRYCG | 2 cut(s) | 265, 585 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 466 |
| BstNI | CCWGG | 2 cut(s) | 67, 151 |
| BstSCI | CCNGG | 5 cut(s) | 65, 149, 180, 247, 567 |
| BstSLI | GKGCMC | 1 cut(s) | 74 |
| BstV1I | GCAGC | 4 cut(s) | 43, 287, 331, 534 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 4 cut(s) | 159, 223, 441, 509 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 504 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 2 cut(s) | 190, 423 |
| BtsIMutI | CAGTG | 1 cut(s) | 435 |
| BveI | ACCTGC | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 4 cut(s) | 88, 221, 335, 458 |
| CfoI | GCGC | 1 cut(s) | 527 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 4 cut(s) | 63, 158, 222, 508 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CsiI | ACCWGGT | 1 cut(s) | 149 |
| CviAII | CATG | 3 cut(s) | 290, 470, 505 |
| CviJI | RGCY | 9 cut(s) | 56, 159, 223, 441, 460, 509, 553, 567, 613 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 159, 223, 441, 460, 509, 553, 567, 613 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 2 cut(s) | 30, 584 |
| DpnII | GATC | 2 cut(s) | 28, 582 |
| Eco130I | CCWWGG | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 1 cut(s) | 462 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco47III | AGCGCT | 1 cut(s) | 526 |
| Eco88I | CYCGRG | 1 cut(s) | 544 |
| EcoRII | CCWGG | 2 cut(s) | 65, 149 |
| EcoT14I | CCWWGG | 1 cut(s) | 504 |
| EcoT38I | GRGCYC | 1 cut(s) | 462 |
| ErhI | CCWWGG | 1 cut(s) | 504 |
| FaeI | CATG | 3 cut(s) | 293, 473, 508 |
| FatI | CATG | 3 cut(s) | 289, 469, 504 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 276, 345, 523 |
| FokI | GGATG | 2 cut(s) | 197, 410 |
| FriOI | GRGCYC | 1 cut(s) | 462 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 276, 345, 523 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GlaI | GCGC | 1 cut(s) | 526 |
| GluI | GCNGC | 4 cut(s) | 57, 276, 345, 523 |
| GsaI | CCCAGC | 2 cut(s) | 164, 514 |
| HaeII | RGCGCY | 1 cut(s) | 528 |
| HaeIII | GGCC | 4 cut(s) | 159, 223, 441, 509 |
| HapII | CCGG | 4 cut(s) | 182, 220, 249, 568 |
| HhaI | GCGC | 1 cut(s) | 527 |
| Hin1II | CATG | 3 cut(s) | 293, 473, 508 |
| Hin6I | GCGC | 1 cut(s) | 525 |
| HinP1I | GCGC | 1 cut(s) | 525 |
| HinfI | GANTC | 2 cut(s) | 244, 591 |
| HpaII | CCGG | 4 cut(s) | 182, 220, 249, 568 |
| HphI | GGTGA | 2 cut(s) | 104, 277 |
| Hpy188I | TCNGA | 5 cut(s) | 63, 139, 239, 587, 617 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 98, 361 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 2 cut(s) | 137, 234 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 2 cut(s) | 275, 469 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 466 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92II | CATG | 3 cut(s) | 293, 473, 508 |
| HspAI | GCGC | 1 cut(s) | 525 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Kzo9I | GATC | 2 cut(s) | 28, 582 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 287, 331, 534 |
| LweI | GCATC | 2 cut(s) | 87, 178 |
| MabI | ACCWGGT | 1 cut(s) | 149 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeIII | GTNAC | 1 cut(s) | 409 |
| MalI | GATC | 2 cut(s) | 30, 584 |
| MboI | GATC | 2 cut(s) | 28, 582 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 200, 305 |
| MhlI | GDGCHC | 3 cut(s) | 74, 88, 462 |
| MluCI | AATT | 2 cut(s) | 41, 476 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 2 cut(s) | 162, 399 |
| MnlI | CCTC | 5 cut(s) | 18, 245, 348, 437, 581 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MseI | TTAA | 1 cut(s) | 44 |
| MspI | CCGG | 4 cut(s) | 182, 220, 249, 568 |
| MspR9I | CCNGG | 5 cut(s) | 67, 151, 182, 249, 569 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 277 |
| MvaI | CCWGG | 2 cut(s) | 67, 151 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 466 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 3 cut(s) | 182, 249, 569 |
| NcoI | CCATGG | 1 cut(s) | 504 |
| NdeII | GATC | 2 cut(s) | 28, 582 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIII | CATG | 3 cut(s) | 293, 473, 508 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 73 |
| PctI | GAATGC | 2 cut(s) | 90, 277 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 591 |
| PflFI | GACNNNGTC | 1 cut(s) | 485 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 247 |
| PkrI | GCNGC | 4 cut(s) | 58, 277, 346, 524 |
| Ple19I | CGATCG | 1 cut(s) | 585 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 2 cut(s) | 65, 149 |
| PspFI | CCCAGC | 2 cut(s) | 160, 510 |
| PspGI | CCWGG | 2 cut(s) | 65, 149 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 73 |
| PspPI | GGNCC | 4 cut(s) | 63, 158, 222, 508 |
| PsyI | GACNNNGTC | 1 cut(s) | 485 |
| PvuI | CGATCG | 1 cut(s) | 585 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 4 cut(s) | 57, 276, 345, 523 |
| Sau3AI | GATC | 2 cut(s) | 28, 582 |
| Sau96I | GGNCC | 4 cut(s) | 63, 158, 222, 508 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 5 cut(s) | 67, 151, 182, 249, 569 |
| SduI | GDGCHC | 3 cut(s) | 74, 88, 462 |
| SetI | ASST | 6 cut(s) | 10, 58, 68, 155, 283, 520 |
| SexAI | ACCWGGT | 1 cut(s) | 149 |
| SfaNI | GCATC | 2 cut(s) | 87, 178 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 602 |
| SmoI | CTYRAG | 1 cut(s) | 602 |
| Sse9I | AATT | 2 cut(s) | 41, 476 |
| SsiI | CCGC | 3 cut(s) | 167, 261, 369 |
| SspMI | CTAG | 1 cut(s) | 98 |
| StyD4I | CCNGG | 5 cut(s) | 65, 149, 180, 247, 567 |
| StyI | CCWWGG | 1 cut(s) | 504 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaqI | TCGA | 4 cut(s) | 27, 450, 489, 500 |
| TasI | AATT | 2 cut(s) | 41, 476 |
| TfiI | GAWTC | 1 cut(s) | 591 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 442 |
| TseI | GCWGC | 4 cut(s) | 56, 275, 344, 522 |
| TspDTI | ATGAA | 2 cut(s) | 83, 528 |
| TspRI | CASTG | 1 cut(s) | 442 |
| Tth111I | GACNNNGTC | 1 cut(s) | 485 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 317 |
| XspI | CTAG | 1 cut(s) | 98 |