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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 63, 90, 172 |
| AccII | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| AcoI | YGGCCR | 4 cut(s) | 95, 282, 388, 770 |
| AcyI | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| AfaI | GTAC | 2 cut(s) | 333, 442 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 169, 246, 489, 724, 742, 775, 849 |
| AgsI | TTSAA | 1 cut(s) | 53 |
| AluBI | AGCT | 3 cut(s) | 122, 612, 808 |
| AluI | AGCT | 3 cut(s) | 122, 612, 808 |
| Alw21I | GWGCWC | 2 cut(s) | 230, 276 |
| Alw26I | GTCTC | 3 cut(s) | 194, 460, 535 |
| Ama87I | CYCGRG | 2 cut(s) | 565, 720 |
| AoxI | GGCC | 6 cut(s) | 3, 95, 208, 282, 388, 770 |
| ApeKI | GCWGC | 1 cut(s) | 665 |
| AsiSI | GCGATCGC | 1 cut(s) | 750 |
| AspLEI | GCGC | 6 cut(s) | 66, 112, 114, 175, 688, 754 |
| AspS9I | GGNCC | 4 cut(s) | 4, 27, 209, 492 |
| AsuC2I | CCSGG | 1 cut(s) | 769 |
| AsuHPI | GGTGA | 2 cut(s) | 188, 808 |
| AvaI | CYCGRG | 2 cut(s) | 565, 720 |
| AvaII | GGWCC | 2 cut(s) | 27, 492 |
| BaeGI | GKGCMC | 1 cut(s) | 93 |
| BanI | GGYRCC | 3 cut(s) | 63, 90, 172 |
| BanII | GRGCYC | 2 cut(s) | 695, 717 |
| BauI | CACGAG | 1 cut(s) | 147 |
| BbsI | GAAGAC | 1 cut(s) | 638 |
| Bbv12I | GWGCWC | 2 cut(s) | 230, 276 |
| BbvI | GCAGC | 1 cut(s) | 652 |
| BccI | CCATC | 2 cut(s) | 106, 482 |
| BceAI | ACGGC | 4 cut(s) | 378, 403, 467, 759 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 275, 309 |
| BcnI | CCSGG | 1 cut(s) | 769 |
| BcoDI | GTCTC | 3 cut(s) | 194, 460, 535 |
| BfaI | CTAG | 2 cut(s) | 470, 672 |
| BfoI | RGCGCY | 2 cut(s) | 67, 176 |
| BisI | GCNGC | 8 cut(s) | 115, 156, 235, 282, 391, 638, 663, 666 |
| BlsI | GCNGC | 8 cut(s) | 116, 157, 236, 283, 392, 639, 664, 667 |
| Bme1390I | CCNGG | 1 cut(s) | 769 |
| Bme18I | GGWCC | 2 cut(s) | 27, 492 |
| BmeT110I | CYCGRG | 2 cut(s) | 565, 720 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 27, 209, 492 |
| BmiI | GGNNCC | 6 cut(s) | 6, 65, 92, 174, 238, 493 |
| BmrFI | CCNGG | 1 cut(s) | 769 |
| BmsI | GCATC | 4 cut(s) | 142, 465, 469, 579 |
| BpiI | GAAGAC | 1 cut(s) | 638 |
| BpuMI | CCSGG | 1 cut(s) | 769 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| BsaHI | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| BsaJI | CCNNGG | 5 cut(s) | 205, 245, 483, 695, 767 |
| BsaWI | WCCGGW | 1 cut(s) | 24 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 169, 246, 489, 724, 742, 775, 849 |
| Bse118I | RCCGGY | 1 cut(s) | 93 |
| Bse1I | ACTGG | 1 cut(s) | 357 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseDI | CCNNGG | 5 cut(s) | 205, 245, 483, 695, 767 |
| BseGI | GGATG | 3 cut(s) | 98, 456, 493 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 169, 246, 489, 724, 742, 775, 849 |
| BseNI | ACTGG | 1 cut(s) | 357 |
| BsePI | GCGCGC | 1 cut(s) | 110 |
| BseRI | GAGGAG | 1 cut(s) | 644 |
| BseSI | GKGCMC | 1 cut(s) | 93 |
| BseX3I | CGGCCG | 2 cut(s) | 282, 388 |
| BseXI | GCAGC | 1 cut(s) | 652 |
| Bsh1236I | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| Bsh1285I | CGRYCG | 4 cut(s) | 221, 285, 391, 750 |
| BshFI | GGCC | 6 cut(s) | 5, 97, 210, 284, 390, 772 |
| BshNI | GGYRCC | 3 cut(s) | 63, 90, 172 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiEI | CGRYCG | 4 cut(s) | 221, 285, 391, 750 |
| BsiHKAI | GWGCWC | 2 cut(s) | 230, 276 |
| BsiHKCI | CYCGRG | 2 cut(s) | 565, 720 |
| BsiSI | CCGG | 5 cut(s) | 25, 94, 163, 269, 769 |
| BslFI | GGGAC | 1 cut(s) | 505 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 169, 246, 489, 724, 742, 775, 849 |
| BsmAI | GTCTC | 3 cut(s) | 194, 460, 535 |
| BsmBI | CGTCTC | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 505 |
| BsnI | GGCC | 6 cut(s) | 5, 97, 210, 284, 390, 772 |
| BsoBI | CYCGRG | 2 cut(s) | 565, 720 |
| Bsp1286I | GDGCHC | 5 cut(s) | 93, 230, 276, 695, 717 |
| Bsp143I | GATC | 2 cut(s) | 643, 747 |
| Bsp19I | CCATGG | 1 cut(s) | 205 |
| Bsp68I | TCGCGA | 2 cut(s) | 135, 711 |
| BspANI | GGCC | 6 cut(s) | 5, 97, 210, 284, 390, 772 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspFNI | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| BspLI | GGNNCC | 6 cut(s) | 6, 65, 92, 174, 238, 493 |
| BspT107I | GGYRCC | 3 cut(s) | 63, 90, 172 |
| BsrFI | RCCGGY | 1 cut(s) | 93 |
| BsrI | ACTGG | 1 cut(s) | 357 |
| BssAI | RCCGGY | 1 cut(s) | 93 |
| BssECI | CCNNGG | 5 cut(s) | 205, 245, 483, 695, 767 |
| BssHII | GCGCGC | 1 cut(s) | 110 |
| BssMI | GATC | 2 cut(s) | 643, 747 |
| BssNI | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| BssSI | CACGAG | 1 cut(s) | 147 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| Bst2BI | CACGAG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 6 cut(s) | 57, 219, 249, 549, 796, 852 |
| Bst6I | CTCTTC | 3 cut(s) | 371, 566, 832 |
| BstACI | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| BstC8I | GCNNGC | 5 cut(s) | 112, 160, 621, 713, 774 |
| BstDEI | CTNAG | 2 cut(s) | 301, 584 |
| BstDSI | CCRYGG | 4 cut(s) | 205, 245, 483, 695 |
| BstF5I | GGATG | 3 cut(s) | 98, 456, 493 |
| BstFNI | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| BstH2I | RGCGCY | 2 cut(s) | 67, 176 |
| BstHHI | GCGC | 6 cut(s) | 66, 112, 114, 175, 688, 754 |
| BstKTI | GATC | 2 cut(s) | 646, 750 |
| BstMAI | GTCTC | 3 cut(s) | 194, 460, 535 |
| BstMBI | GATC | 2 cut(s) | 643, 747 |
| BstMCI | CGRYCG | 4 cut(s) | 221, 285, 391, 750 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 234, 453 |
| BstSCI | CCNGG | 1 cut(s) | 767 |
| BstSLI | GKGCMC | 1 cut(s) | 93 |
| BstUI | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| BstV1I | GCAGC | 1 cut(s) | 652 |
| BstV2I | GAAGAC | 1 cut(s) | 638 |
| BstZI | CGGCCG | 2 cut(s) | 282, 388 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| BsuRI | GGCC | 6 cut(s) | 5, 97, 210, 284, 390, 772 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtgI | CCRYGG | 4 cut(s) | 205, 245, 483, 695 |
| BtsCI | GGATG | 3 cut(s) | 98, 456, 493 |
| BtsIMutI | CAGTG | 1 cut(s) | 350 |
| BtuMI | TCGCGA | 2 cut(s) | 135, 711 |
| Cac8I | GCNNGC | 5 cut(s) | 112, 160, 621, 713, 774 |
| CfoI | GCGC | 6 cut(s) | 66, 112, 114, 175, 688, 754 |
| Cfr10I | RCCGGY | 1 cut(s) | 93 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 27, 209, 492 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| CseI | GACGC | 2 cut(s) | 431, 643 |
| Csp6I | GTAC | 2 cut(s) | 332, 441 |
| CviAII | CATG | 1 cut(s) | 206 |
| CviQI | GTAC | 2 cut(s) | 332, 441 |
| DdeI | CTNAG | 2 cut(s) | 301, 584 |
| DinI | GGCGCC | 2 cut(s) | 65, 174 |
| DpnI | GATC | 2 cut(s) | 645, 749 |
| DpnII | GATC | 2 cut(s) | 643, 747 |
| EaeI | YGGCCR | 4 cut(s) | 95, 282, 388, 770 |
| EagI | CGGCCG | 2 cut(s) | 282, 388 |
| Eam1104I | CTCTTC | 3 cut(s) | 371, 566, 832 |
| EarI | CTCTTC | 3 cut(s) | 371, 566, 832 |
| EciI | GGCGGA | 2 cut(s) | 132, 638 |
| EclXI | CGGCCG | 2 cut(s) | 282, 388 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 2 cut(s) | 695, 717 |
| Eco32I | GATATC | 1 cut(s) | 590 |
| Eco47I | GGWCC | 2 cut(s) | 27, 492 |
| Eco52I | CGGCCG | 2 cut(s) | 282, 388 |
| Eco88I | CYCGRG | 2 cut(s) | 565, 720 |
| EcoRV | GATATC | 1 cut(s) | 590 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| EcoT22I | ATGCAT | 1 cut(s) | 458 |
| EcoT38I | GRGCYC | 2 cut(s) | 695, 717 |
| EgeI | GGCGCC | 2 cut(s) | 65, 174 |
| EheI | GGCGCC | 2 cut(s) | 65, 174 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| Esp3I | CGTCTC | 1 cut(s) | 194 |
| FaeI | CATG | 1 cut(s) | 209 |
| FaiI | YATR | 5 cut(s) | 207, 454, 507, 552, 597 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 310, 342 |
| FaqI | GGGAC | 1 cut(s) | 505 |
| FatI | CATG | 1 cut(s) | 205 |
| FauI | CCCGC | 1 cut(s) | 851 |
| Fnu4HI | GCNGC | 8 cut(s) | 115, 156, 235, 282, 391, 638, 663, 666 |
| FokI | GGATG | 3 cut(s) | 85, 443, 500 |
| FriOI | GRGCYC | 2 cut(s) | 695, 717 |
| Fsp4HI | GCNGC | 8 cut(s) | 115, 156, 235, 282, 391, 638, 663, 666 |
| FspBI | CTAG | 2 cut(s) | 470, 672 |
| GlaI | GCGC | 6 cut(s) | 65, 111, 113, 174, 687, 753 |
| GluI | GCNGC | 8 cut(s) | 115, 156, 235, 282, 391, 638, 663, 666 |
| HaeII | RGCGCY | 2 cut(s) | 67, 176 |
| HaeIII | GGCC | 6 cut(s) | 5, 97, 210, 284, 390, 772 |
| HapII | CCGG | 5 cut(s) | 25, 94, 163, 269, 769 |
| HgaI | GACGC | 2 cut(s) | 431, 643 |
| HhaI | GCGC | 6 cut(s) | 66, 112, 114, 175, 688, 754 |
| Hin1I | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| Hin1II | CATG | 1 cut(s) | 209 |
| Hin6I | GCGC | 6 cut(s) | 64, 110, 112, 173, 686, 752 |
| HinP1I | GCGC | 6 cut(s) | 64, 110, 112, 173, 686, 752 |
| HinfI | GANTC | 5 cut(s) | 38, 70, 183, 363, 821 |
| HpaII | CCGG | 5 cut(s) | 25, 94, 163, 269, 769 |
| HphI | GGTGA | 2 cut(s) | 188, 808 |
| Hpy188I | TCNGA | 2 cut(s) | 540, 659 |
| Hpy188III | TCNNGA | 7 cut(s) | 134, 465, 565, 628, 710, 722, 781 |
| Hpy99I | CGWCG | 3 cut(s) | 18, 290, 835 |
| HpyAV | CCTTC | 2 cut(s) | 28, 494 |
| HpyCH4III | ACNGT | 6 cut(s) | 57, 219, 249, 549, 796, 852 |
| HpyCH4V | TGCA | 2 cut(s) | 456, 668 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 234, 453 |
| HpyF3I | CTNAG | 2 cut(s) | 301, 584 |
| Hsp92I | GRCGYC | 4 cut(s) | 64, 173, 423, 635 |
| Hsp92II | CATG | 1 cut(s) | 209 |
| HspAI | GCGC | 6 cut(s) | 64, 110, 112, 173, 686, 752 |
| KasI | GGCGCC | 2 cut(s) | 63, 172 |
| Kzo9I | GATC | 2 cut(s) | 643, 747 |
| LmnI | GCTCC | 3 cut(s) | 119, 242, 271 |
| LpnPI | CCDG | 9 cut(s) | 38, 107, 112, 176, 282, 338, 457, 782, 786 |
| Lsp1109I | GCAGC | 1 cut(s) | 652 |
| LweI | GCATC | 4 cut(s) | 142, 465, 469, 579 |
| MaeI | CTAG | 2 cut(s) | 470, 672 |
| MalI | GATC | 2 cut(s) | 645, 749 |
| MauBI | CGCGCGCG | 1 cut(s) | 110 |
| MboI | GATC | 2 cut(s) | 643, 747 |
| MboII | GAAGA | 6 cut(s) | 358, 509, 553, 643, 819, 830 |
| MhlI | GDGCHC | 5 cut(s) | 93, 230, 276, 695, 717 |
| MluCI | AATT | 3 cut(s) | 177, 291, 534 |
| Mly113I | GGCGCC | 2 cut(s) | 64, 173 |
| MlyI | GAGTC | 3 cut(s) | 32, 177, 357 |
| Mph1103I | ATGCAT | 1 cut(s) | 458 |
| MspA1I | CMGCKG | 2 cut(s) | 665, 776 |
| MspI | CCGG | 5 cut(s) | 25, 94, 163, 269, 769 |
| MspR9I | CCNGG | 1 cut(s) | 769 |
| MvnI | CGCG | 9 cut(s) | 110, 112, 114, 135, 223, 234, 686, 711, 752 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 234, 453 |
| NarI | GGCGCC | 2 cut(s) | 64, 173 |
| NciI | CCSGG | 1 cut(s) | 769 |
| NcoI | CCATGG | 1 cut(s) | 205 |
| NdeII | GATC | 2 cut(s) | 643, 747 |
| NlaIII | CATG | 1 cut(s) | 209 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 65, 92, 174, 238, 493 |
| NmeAIII | GCCGAG | 2 cut(s) | 384, 714 |
| NruI | TCGCGA | 2 cut(s) | 135, 711 |
| NsiI | ATGCAT | 1 cut(s) | 458 |
| PaeR7I | CTCGAG | 2 cut(s) | 565, 720 |
| PauI | GCGCGC | 1 cut(s) | 110 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 800 |
| PfeI | GAWTC | 2 cut(s) | 70, 821 |
| PflFI | GACNNNGTC | 1 cut(s) | 186 |
| PkrI | GCNGC | 8 cut(s) | 116, 157, 236, 283, 392, 639, 664, 667 |
| Ple19I | CGATCG | 1 cut(s) | 750 |
| PleI | GAGTC | 3 cut(s) | 32, 177, 357 |
| PluTI | GGCGCC | 2 cut(s) | 67, 176 |
| PpsI | GAGTC | 3 cut(s) | 32, 177, 357 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 65, 92, 174, 238, 493 |
| PspPI | GGNCC | 4 cut(s) | 4, 27, 209, 492 |
| PsyI | GACNNNGTC | 1 cut(s) | 186 |
| PteI | GCGCGC | 1 cut(s) | 110 |
| PvuI | CGATCG | 1 cut(s) | 750 |
| RgaI | GCGATCGC | 1 cut(s) | 750 |
| RruI | TCGCGA | 2 cut(s) | 135, 711 |
| RsaI | GTAC | 2 cut(s) | 333, 442 |
| RsaNI | GTAC | 2 cut(s) | 332, 441 |
| SatI | GCNGC | 8 cut(s) | 115, 156, 235, 282, 391, 638, 663, 666 |
| Sau3AI | GATC | 2 cut(s) | 643, 747 |
| Sau96I | GGNCC | 4 cut(s) | 4, 27, 209, 492 |
| SchI | GAGTC | 3 cut(s) | 32, 177, 357 |
| ScrFI | CCNGG | 1 cut(s) | 769 |
| SduI | GDGCHC | 5 cut(s) | 93, 230, 276, 695, 717 |
| SetI | ASST | 6 cut(s) | 124, 201, 381, 614, 741, 810 |
| SfaAI | GCGATCGC | 1 cut(s) | 750 |
| SfaNI | GCATC | 4 cut(s) | 142, 465, 469, 579 |
| SfoI | GGCGCC | 2 cut(s) | 65, 174 |
| Sfr274I | CTCGAG | 2 cut(s) | 565, 720 |
| SgfI | GCGATCGC | 1 cut(s) | 750 |
| SinI | GGWCC | 2 cut(s) | 27, 492 |
| SlaI | CTCGAG | 2 cut(s) | 565, 720 |
| SmlI | CTYRAG | 2 cut(s) | 565, 720 |
| SmoI | CTYRAG | 2 cut(s) | 565, 720 |
| Sse9I | AATT | 3 cut(s) | 177, 291, 534 |
| SspDI | GGCGCC | 2 cut(s) | 63, 172 |
| SspMI | CTAG | 2 cut(s) | 470, 672 |
| StyD4I | CCNGG | 1 cut(s) | 767 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaaI | ACNGT | 6 cut(s) | 57, 219, 249, 549, 796, 852 |
| TaqII | GACCGA | 1 cut(s) | 509 |
| TasI | AATT | 3 cut(s) | 177, 291, 534 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TauI | GCSGC | 7 cut(s) | 117, 158, 237, 284, 393, 640, 665 |
| TfiI | GAWTC | 2 cut(s) | 70, 821 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseI | GCWGC | 1 cut(s) | 665 |
| TspDTI | ATGAA | 1 cut(s) | 312 |
| TspGWI | ACGGA | 2 cut(s) | 176, 303 |
| TspRI | CASTG | 1 cut(s) | 357 |
| Tth111I | GACNNNGTC | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 2 cut(s) | 27, 492 |
| XhoI | CTCGAG | 2 cut(s) | 565, 720 |
| XspI | CTAG | 2 cut(s) | 470, 672 |
| Zsp2I | ATGCAT | 1 cut(s) | 458 |