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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 61 |
| AccBSI | CCGCTC | 1 cut(s) | 173 |
| AccII | CGCG | 2 cut(s) | 94, 246 |
| AciI | CCGC | 6 cut(s) | 60, 173, 179, 286, 395, 440 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcoI | YGGCCR | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 14, 50, 213, 214 |
| AgsI | TTSAA | 2 cut(s) | 329, 404 |
| AluBI | AGCT | 4 cut(s) | 67, 425, 431, 462 |
| AluI | AGCT | 4 cut(s) | 67, 425, 431, 462 |
| Alw26I | GTCTC | 2 cut(s) | 273, 417 |
| AlwI | GGATC | 1 cut(s) | 296 |
| AoxI | GGCC | 5 cut(s) | 5, 180, 216, 263, 396 |
| ApaI | GGGCCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 4 cut(s) | 67, 176, 462, 465 |
| AseI | ATTAAT | 1 cut(s) | 162 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 117 |
| AspLEI | GCGC | 1 cut(s) | 56 |
| AspS9I | GGNCC | 3 cut(s) | 216, 217, 309 |
| AsuC2I | CCSGG | 2 cut(s) | 9, 355 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 113 |
| AsuNHI | GCTAGC | 1 cut(s) | 431 |
| AvaII | GGWCC | 1 cut(s) | 309 |
| BaeGI | GKGCMC | 1 cut(s) | 220 |
| BanII | GRGCYC | 1 cut(s) | 220 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| BbvI | GCAGC | 4 cut(s) | 54, 163, 449, 452 |
| BccI | CCATC | 1 cut(s) | 111 |
| BceAI | ACGGC | 1 cut(s) | 67 |
| BciVI | GTATCC | 1 cut(s) | 229 |
| BcnI | CCSGG | 2 cut(s) | 9, 355 |
| BcoDI | GTCTC | 2 cut(s) | 273, 417 |
| BfaI | CTAG | 5 cut(s) | 380, 392, 422, 432, 475 |
| BfmI | CTRYAG | 1 cut(s) | 68 |
| BfuAI | ACCTGC | 1 cut(s) | 61 |
| BfuI | GTATCC | 1 cut(s) | 229 |
| BisI | GCNGC | 8 cut(s) | 68, 174, 177, 180, 396, 441, 463, 466 |
| BlsI | GCNGC | 8 cut(s) | 69, 175, 178, 181, 397, 442, 464, 467 |
| Bme1390I | CCNGG | 2 cut(s) | 9, 355 |
| Bme18I | GGWCC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 3 cut(s) | 216, 217, 309 |
| BmiI | GGNNCC | 4 cut(s) | 19, 218, 311, 372 |
| BmrFI | CCNGG | 2 cut(s) | 9, 355 |
| BmsI | GCATC | 2 cut(s) | 65, 461 |
| BmtI | GCTAGC | 1 cut(s) | 435 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 3 cut(s) | 98, 380, 411 |
| BpuMI | CCSGG | 2 cut(s) | 9, 355 |
| BsaJI | CCNNGG | 1 cut(s) | 8 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 14, 50, 213, 214 |
| BseDI | CCNNGG | 1 cut(s) | 8 |
| BseGI | GGATG | 2 cut(s) | 40, 56 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 14, 50, 213, 214 |
| BseSI | GKGCMC | 1 cut(s) | 220 |
| BseX3I | CGGCCG | 1 cut(s) | 180 |
| BseXI | GCAGC | 4 cut(s) | 54, 163, 449, 452 |
| Bsh1236I | CGCG | 2 cut(s) | 94, 246 |
| Bsh1285I | CGRYCG | 1 cut(s) | 183 |
| BshFI | GGCC | 5 cut(s) | 7, 182, 218, 265, 398 |
| BsiEI | CGRYCG | 1 cut(s) | 183 |
| BsiSI | CCGG | 2 cut(s) | 8, 355 |
| BslFI | GGGAC | 2 cut(s) | 19, 295 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 14, 50, 213, 214 |
| BsmAI | GTCTC | 2 cut(s) | 273, 417 |
| BsmFI | GGGAC | 2 cut(s) | 19, 295 |
| BsnI | GGCC | 5 cut(s) | 7, 182, 218, 265, 398 |
| Bsp120I | GGGCCC | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 1 cut(s) | 220 |
| Bsp143I | GATC | 1 cut(s) | 288 |
| Bsp68I | TCGCGA | 2 cut(s) | 94, 246 |
| BspACI | CCGC | 6 cut(s) | 60, 173, 179, 286, 395, 440 |
| BspANI | GGCC | 5 cut(s) | 7, 182, 218, 265, 398 |
| BspFNI | CGCG | 2 cut(s) | 94, 246 |
| BspLI | GGNNCC | 4 cut(s) | 19, 218, 311, 372 |
| BspMAI | CTGCAG | 1 cut(s) | 72 |
| BspMI | ACCTGC | 1 cut(s) | 61 |
| BspOI | GCTAGC | 1 cut(s) | 435 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BsrBI | CCGCTC | 1 cut(s) | 173 |
| BssECI | CCNNGG | 1 cut(s) | 8 |
| BssMI | GATC | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 5 cut(s) | 96, 189, 198, 433, 460 |
| BstDEI | CTNAG | 1 cut(s) | 253 |
| BstF5I | GGATG | 2 cut(s) | 40, 56 |
| BstFNI | CGCG | 2 cut(s) | 94, 246 |
| BstHHI | GCGC | 1 cut(s) | 56 |
| BstKTI | GATC | 1 cut(s) | 291 |
| BstMAI | GTCTC | 2 cut(s) | 273, 417 |
| BstMBI | GATC | 1 cut(s) | 288 |
| BstMCI | CGRYCG | 1 cut(s) | 183 |
| BstSCI | CCNGG | 2 cut(s) | 7, 353 |
| BstSFI | CTRYAG | 1 cut(s) | 68 |
| BstSLI | GKGCMC | 1 cut(s) | 220 |
| BstUI | CGCG | 2 cut(s) | 94, 246 |
| BstV1I | GCAGC | 4 cut(s) | 54, 163, 449, 452 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| BstZI | CGGCCG | 1 cut(s) | 180 |
| BsuI | GTATCC | 1 cut(s) | 229 |
| BsuRI | GGCC | 5 cut(s) | 7, 182, 218, 265, 398 |
| BtsCI | GGATG | 2 cut(s) | 40, 56 |
| BtuMI | TCGCGA | 2 cut(s) | 94, 246 |
| BveI | ACCTGC | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 5 cut(s) | 96, 189, 198, 433, 460 |
| CfoI | GCGC | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 3 cut(s) | 216, 217, 309 |
| Csp6I | GTAC | 1 cut(s) | 74 |
| CviAII | CATG | 1 cut(s) | 365 |
| CviQI | GTAC | 1 cut(s) | 74 |
| DdeI | CTNAG | 1 cut(s) | 253 |
| DpnI | GATC | 1 cut(s) | 290 |
| DpnII | GATC | 1 cut(s) | 288 |
| EaeI | YGGCCR | 1 cut(s) | 180 |
| EagI | CGGCCG | 1 cut(s) | 180 |
| EciI | GGCGGA | 1 cut(s) | 49 |
| EclXI | CGGCCG | 1 cut(s) | 180 |
| Eco147I | AGGCCT | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 309 |
| Eco52I | CGGCCG | 1 cut(s) | 180 |
| EcoO109I | RGGNCCY | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 220 |
| FaeI | CATG | 1 cut(s) | 368 |
| FaiI | YATR | 1 cut(s) | 366 |
| FaqI | GGGAC | 2 cut(s) | 19, 295 |
| FatI | CATG | 1 cut(s) | 364 |
| Fnu4HI | GCNGC | 8 cut(s) | 68, 174, 177, 180, 396, 441, 463, 466 |
| FokI | GGATG | 2 cut(s) | 27, 43 |
| FriOI | GRGCYC | 1 cut(s) | 220 |
| Fsp4HI | GCNGC | 8 cut(s) | 68, 174, 177, 180, 396, 441, 463, 466 |
| FspBI | CTAG | 5 cut(s) | 380, 392, 422, 432, 475 |
| GlaI | GCGC | 1 cut(s) | 55 |
| GluI | GCNGC | 8 cut(s) | 68, 174, 177, 180, 396, 441, 463, 466 |
| HaeIII | GGCC | 5 cut(s) | 7, 182, 218, 265, 398 |
| HapII | CCGG | 2 cut(s) | 8, 355 |
| HhaI | GCGC | 1 cut(s) | 56 |
| Hin1II | CATG | 1 cut(s) | 368 |
| Hin6I | GCGC | 1 cut(s) | 54 |
| HinP1I | GCGC | 1 cut(s) | 54 |
| HinfI | GANTC | 2 cut(s) | 32, 145 |
| HpaII | CCGG | 2 cut(s) | 8, 355 |
| HphI | GGTGA | 2 cut(s) | 98, 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 121 |
| Hpy188III | TCNNGA | 3 cut(s) | 36, 93, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 121 |
| Hpy99I | CGWCG | 1 cut(s) | 94 |
| HpyAV | CCTTC | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 1 cut(s) | 70 |
| HpyF3I | CTNAG | 1 cut(s) | 253 |
| Hsp92II | CATG | 1 cut(s) | 368 |
| HspAI | GCGC | 1 cut(s) | 54 |
| Kzo9I | GATC | 1 cut(s) | 288 |
| LmnI | GCTCC | 1 cut(s) | 23 |
| LpnPI | CCDG | 3 cut(s) | 21, 56, 368 |
| Lsp1109I | GCAGC | 4 cut(s) | 54, 163, 449, 452 |
| LweI | GCATC | 2 cut(s) | 65, 461 |
| MaeI | CTAG | 5 cut(s) | 380, 392, 422, 432, 475 |
| MaeIII | GTNAC | 1 cut(s) | 346 |
| MalI | GATC | 1 cut(s) | 290 |
| MbiI | CCGCTC | 1 cut(s) | 173 |
| MboI | GATC | 1 cut(s) | 288 |
| MboII | GAAGA | 3 cut(s) | 78, 140, 296 |
| MhlI | GDGCHC | 1 cut(s) | 220 |
| MlyI | GAGTC | 2 cut(s) | 41, 154 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| MnlI | CCTC | 6 cut(s) | 55, 73, 230, 250, 281, 361 |
| MroXI | GAANNNNTTC | 1 cut(s) | 117 |
| MseI | TTAA | 1 cut(s) | 162 |
| MspI | CCGG | 2 cut(s) | 8, 355 |
| MspR9I | CCNGG | 2 cut(s) | 9, 355 |
| MvnI | CGCG | 2 cut(s) | 94, 246 |
| NciI | CCSGG | 2 cut(s) | 9, 355 |
| NdeII | GATC | 1 cut(s) | 288 |
| NheI | GCTAGC | 1 cut(s) | 431 |
| NlaIII | CATG | 1 cut(s) | 368 |
| NlaIV | GGNNCC | 4 cut(s) | 19, 218, 311, 372 |
| NmeAIII | GCCGAG | 3 cut(s) | 88, 208, 217 |
| NruI | TCGCGA | 2 cut(s) | 94, 246 |
| PceI | AGGCCT | 1 cut(s) | 265 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 95, 121 |
| PdmI | GAANNNNTTC | 1 cut(s) | 117 |
| PkrI | GCNGC | 8 cut(s) | 69, 175, 178, 181, 397, 442, 464, 467 |
| PleI | GAGTC | 2 cut(s) | 40, 153 |
| PpsI | GAGTC | 2 cut(s) | 40, 153 |
| PshBI | ATTAAT | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 4 cut(s) | 19, 218, 311, 372 |
| PspOMI | GGGCCC | 1 cut(s) | 216 |
| PspPI | GGNCC | 3 cut(s) | 216, 217, 309 |
| PstI | CTGCAG | 1 cut(s) | 72 |
| RruI | TCGCGA | 2 cut(s) | 94, 246 |
| RsaI | GTAC | 1 cut(s) | 75 |
| RsaNI | GTAC | 1 cut(s) | 74 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 8 cut(s) | 68, 174, 177, 180, 396, 441, 463, 466 |
| Sau3AI | GATC | 1 cut(s) | 288 |
| Sau96I | GGNCC | 3 cut(s) | 216, 217, 309 |
| SchI | GAGTC | 2 cut(s) | 41, 154 |
| ScrFI | CCNGG | 2 cut(s) | 9, 355 |
| SduI | GDGCHC | 1 cut(s) | 220 |
| SetI | ASST | 8 cut(s) | 69, 75, 242, 376, 423, 427, 433, 464 |
| SfaNI | GCATC | 2 cut(s) | 65, 461 |
| SfcI | CTRYAG | 1 cut(s) | 68 |
| SinI | GGWCC | 1 cut(s) | 309 |
| SmlI | CTYRAG | 3 cut(s) | 77, 359, 426 |
| SmoI | CTYRAG | 3 cut(s) | 77, 359, 426 |
| SseBI | AGGCCT | 1 cut(s) | 265 |
| SsiI | CCGC | 6 cut(s) | 60, 173, 179, 286, 395, 440 |
| SspMI | CTAG | 5 cut(s) | 380, 392, 422, 432, 475 |
| StuI | AGGCCT | 1 cut(s) | 265 |
| StyD4I | CCNGG | 2 cut(s) | 7, 353 |
| TaqI | TCGA | 2 cut(s) | 30, 445 |
| TaqII | GACCGA | 1 cut(s) | 297 |
| TauI | GCSGC | 4 cut(s) | 176, 182, 398, 443 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TseI | GCWGC | 4 cut(s) | 67, 176, 462, 465 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| TspGWI | ACGGA | 2 cut(s) | 172, 248 |
| VpaK11BI | GGWCC | 1 cut(s) | 309 |
| VspI | ATTAAT | 1 cut(s) | 162 |
| XmnI | GAANNNNTTC | 1 cut(s) | 117 |
| XspI | CTAG | 5 cut(s) | 380, 392, 422, 432, 475 |